Array 1 1538309-1536024 **** Predicted by CRISPRDetect 2.4 *** >NC_011059.1 Prosthecochloris aestuarii DSM 271, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1538308 28 100.0 33 ............................ CTTTTTAAAATTTGACAGGAGTGAATGATGGAA 1538247 28 100.0 33 ............................ CATACATCTGGTTAGCCTGGTCACTACTACCAA 1538186 28 100.0 33 ............................ TCGATTGCTTACACCGCTGATGGGGAGAAGGTT 1538125 28 100.0 33 ............................ CTGAGGCGCTGTACGCTGAAGATCTCAGGACGC 1538064 28 100.0 33 ............................ TGCTTCAAGTTCACGCTCCCATGCGCCGACACC 1538003 28 100.0 33 ............................ CTGACCCTCCGATAAAAGCGTTACCTTTAGCGT 1537942 28 100.0 33 ............................ TACGCTGTGCTGGATGGGGTCAGGAAAGAATGC 1537881 28 100.0 33 ............................ CCTTCTGCAGCAGAGTCTCGCTCCATATAAAAA 1537820 28 100.0 33 ............................ TACAGTACGGGTTGTGCTTGACTACTGCCGGAA 1537759 28 100.0 33 ............................ CTCATGCCCTCCTGAGTTAGCCCTGTACCAGAT 1537698 28 100.0 33 ............................ CTCAAAAGTAAGACGCAGCAGGCGATAAGCAGA 1537637 28 100.0 33 ............................ CGCAGAATCATCTCTCGCTTTGCCAGATATTCG 1537576 28 100.0 33 ............................ CGGCATCGTGTCTGCGCCAGAGATAAAGGAATT 1537515 28 100.0 33 ............................ CAGACCGGCGCGGTTCAGCCAAAGTAATAGATC 1537454 28 100.0 33 ............................ CACCGCTCATCAACGAGAGGTTAAGGATTTACG 1537393 28 100.0 33 ............................ AAGTATTCGTTCAGGCTTAGAGCGAACGCTTCG 1537332 28 100.0 33 ............................ CAGTTTGAGGAGCATGACTGTTTTGATTGTATC 1537271 28 100.0 33 ............................ CGACACAGGCCCCTATAGATGACATCATCCGCC 1537210 28 100.0 33 ............................ CACTCGACAGCTCGCATCTCAGATCTGCTGCGG 1537149 28 100.0 33 ............................ TTCTCCTCGACGAGCTCATCAGAGTAAGACAGA 1537088 28 100.0 33 ............................ CAAGAGGGCAGAGATGTATGAGAGGTTTCTGGA 1537027 28 100.0 33 ............................ CTTTCCTGTCGTCTCCTCAAGCGCCGAAGCATC 1536966 28 100.0 33 ............................ TGCCCGACCGCACGTGCAAAGTATTCAGCCCAT 1536905 28 100.0 33 ............................ TAAATATTACTTCACCATAAAACTTGGTAGCAG 1536844 28 100.0 33 ............................ TACTGTTGAGGTCACACGTGACCAGTCTACTCC 1536783 28 100.0 33 ............................ CGGTAGCGGGGTGGCTTGATGCGCTGGAGGGGA 1536722 28 96.4 33 ............T............... TCAATGAGAGTTGTAAGAGTTGTTGACTGCAAG 1536661 28 100.0 33 ............................ CGGCATCGTTGCGCATTTCGAGCAGTGGGCCAA 1536600 28 100.0 33 ............................ CTGCGTGAGCGTGCCGAAGTGGGCGTAGCTCAC 1536539 28 100.0 33 ............................ CCAGCGGCCACGATCCATTTTCATTCTTGCCCT 1536478 28 100.0 33 ............................ CAGTGCGCGTTCCTGCTGCCGGTCTCTATTTCC 1536417 28 100.0 33 ............................ TGCCTTCGCCCAGACCTCAAGGCAAGCCGCGTC 1536356 28 100.0 33 ............................ TCCTTGATTCGCGTTGAGGTGGCCGGGTTTTCT 1536295 28 100.0 33 ............................ CTCAAAAGACCCATTCACATCATCAGTGCGATT 1536234 28 100.0 33 ............................ CAAGCCCCCCATCTTCATAGTAGCGCTTGTCGA 1536173 28 100.0 33 ............................ TACCCCGAAGCACCAAGATCAGCAAGATCCACA 1536112 28 96.4 32 ......................G..... ACCCATCCTGCACCTTCGTCACGCCGGAAGGA C [1536086] 1536051 28 89.3 0 ......................G...CT | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.5 33 GTCTTCCCCACAGGCGTGGGGGTGTTTC # Left flank : ACAAAGAGAATCTCTCGATTGATCTCGCCTTTCGATTGACGGCGTTGATGGCCGGAACTTATGATAGGCACAAAATTGCTACTGAATTTCGCAGGAGAGTTATTGAGATGGATCTTCTTGCTCGTATTGGGCCTGATATTGAAGAAATGCTTGGGAGGTAAGAATGGTGATTGTTGTCGCTAATGATATTCCGCCTGCAGTAAGGGGGCGAATGAAACTCTGGTTTGTGGAGCCGCGAGCAAATGTTTTTGTTTCTGGAATAAAAGATTCTGTTGCTAAAAAAGTAATAGACTATTTGCATAAGCACTGTCCGTCTGAATCCGGACTTATGGTGTTCAAAAGTTGCAATGAAGCACCAGGATATGAGATTTTCGGCCATGGTGATACTCGTAAGCAGTTGATTGAACTTTCAGGAATGCAACTCGTTATTGAGAAGTATTCTGAACCCAATCGAGAATCAAAAACATGATCGGGCGGCTGAAAGCCCTGTAAATTCCAGT # Right flank : ACCCCTTATTCGATGCAAGCAAGCCATCATGACTGTGAACGTACTCAGAAACTTCTGTGTGAATTATGTTGTTTGACAGATGCTGCGCAGTTGGTCATCCGAAACCCTTTGGTGTGCAGCGGAAACGATACCCCTGAACATTCAAGCGCTGTCGGTGGTTAAGATACTCATCAGTGGACGGTGATTATGATTCGGGCGTCTTGAGCGGAAAACAGGGTATTACTATGTCAGACAACACAATCGGTGGTTTTTTTGAATATCTGAATTGGCTTTTCAATCCGTTCCATGGATTGAAAACAACGGAAGTCTATGATTTGATTGGTACGACGTCTCTTACTGAGAATGCGTTATATCTGAATCTTGGCTATTGGCGGGATGTGGATACCATTGATGAAGCCAGTGAAGCGCTTGCTCTTCTGGTGGCGAAAAGAGGCGGGATGGGTGCAGGCGATACCGTCCTGGATTGCGGGTATGGTTTTGGCGATCAGGACATCCTCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACAGGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2175530-2174895 **** Predicted by CRISPRDetect 2.4 *** >NC_011059.1 Prosthecochloris aestuarii DSM 271, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2175529 37 100.0 38 ..................................... TTAGATGTAGACGTAGATGCCTTTCTTTGTAAAGATGC 2175454 37 100.0 35 ..................................... GGACCATTTCTTGACGCAACAAGATCGCGTCGTTT 2175382 37 100.0 39 ..................................... CGACAGGTTGCCGAGGCTGTTTAGGTTGCCAAACATCAG 2175306 37 100.0 37 ..................................... CTCCAACTAAACACATCTATTTCATTTAGATTTTTCT 2175232 37 100.0 41 ..................................... TTTGATGACTGGTCGAGTGTAAACAACATCAAGACCACATC 2175154 37 100.0 41 ..................................... GAGTCATAATTAACCAGTTCGTAGGCGCCCATATAAGCCTT 2175076 37 100.0 33 ..................................... GCCGAGCATCTTCTCGGTCATTACTCCGTTCGC 2175006 37 100.0 38 ..................................... TTCTTCATAACTTTTACAGTCTTCAAGCAGTGATTCCA 2174931 37 91.9 0 ...............................G.G..A | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.1 38 GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Left flank : ATATTCAGGAGCAGGGAACGGTTCTGCGGATCGAAAATGAGCGGTTCAGGGTGACCGTGGGGGATGATGACGATGAGGATATCGTCAATATCCCGTCTATCAAAGTGGGGCAGATCGTGATTTTCGGAGCGTGTATGGTGACTCCTGCAGCGATGAGGTTTTGCCTGAGTGTAGGAAGACCCGATTAGATACAGGGGAGGGGAAGGGAAGTGCTATGTGTTAGGTGTGAAGTGCTACGTTCTGAGTGCTGAGCAATGAGCAATGAGTGATGAGTGATGAGTGATGAGTGATGAGTGGATGCCAGAATTTAGCTGTAGGGGCAGGCCCCTGTGCCTGCCCGGACGGATGGTCGGTTGTCATCGTATCGTGGGGTGAACAAGATGTTGCAGTGTTGTGAGAACGACAGAAAATGCCGAATTTGTTCTGTGGAGGCCAGTTGTTCCGACCTCCGTGAAAAACGCTCTGGAGAGCCTTTCCTGGCGCAGGTTTCCAGAGGGTGG # Right flank : GGGAGGTGCTATGTGTTAGGTGGGATGTGTTGAGTTCTGAGTGCTGAGCAATGAGTGATGAGCAATGAGTGCTGAGCAATGAGTGATGAGCAATGAGTGATGAGCAATGAGTGATGAGTTTTGAGGGGATGCCAGAATTCAGCTGTAGGGGCAGGCCCCTGTGCCTGCCCGGACGGATGGTCGGCTGTCAGCGTATCGTGGGGAGGTAATGTGCTATGTGTTAGGTGGGAAGTGTTGAGTTCTGAGTGCTGAGCAATGAGGCAAGAATTCAATTGTAGGGTGCCCTTACGGGTGTGTGATGGGTTGGGCGAGTTTTAGATGACTTTATTGATGGTCGATAATAGATCGGGCAAGGACATGATGTTATGCGTATCACTGATGCGATTGTTATTCCGGATTCTGAGATAGAGATTACTGCAATTCGTTCGCAGGGGCCGGGTGGTCAGAATGTGAACAAGGTTGCGACGGCGGTGCAGCTGCGTTTTGTTATTGCATCGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTAGGAAGACCCGATTGAGTAAGGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 2177691-2177296 **** Predicted by CRISPRDetect 2.4 *** >NC_011059.1 Prosthecochloris aestuarii DSM 271, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 2177690 35 100.0 35 ................................... CTGCATTCTTTTTCGTCAGCTTTTCTGTCGTCATT 2177620 35 100.0 37 ................................... GAATTACAGTTCATACAAAAGACATGGGGGATGTCTG 2177548 35 100.0 39 ................................... ATTTCTTACCAACATGTGCTGCAGGAACCTCAACCACTT 2177474 35 100.0 38 ................................... ATAGAATCCCGAAATCACATAGCTGTACTGAGTGTTTC 2177401 35 100.0 36 ................................... TTTGCAACTGGACCACAGTACGTGTCACCCGCATAA 2177330 35 88.6 0 .............................G.G.GA | ========== ====== ====== ====== =================================== ======================================= ================== 6 35 98.1 37 GTTTGAAGACCCGATTAGCTACAGGGGATTGCGAC # Left flank : AACATTAAGTGCTTATAGACAGATACAAGATGACAAAAAGCTTCAAGCAGTTTTAAGCGCTATTTCATGAGTAAACCATATTTGTTTTTCACGTTTCAGCCAAGTTGCACATGAGCCGCCTATTGGACAGGGGTTGCATGCGATGTGTTGCAAGCATCGACCAGATCGGCTATCGTCAGACACAATGTTCCAGTGTCGCCGCTCGGATGGGTGAAGCTTGCTGTCTTTGACTGACGTATGGTTGAGAAAAACCGAAGGCTCGTTTTTTCTCGCTGTGATAACGGTGTGAATATTCTTGCAACGTATTTTATTGTGATGAGTTACTGGGGATTTTGGCTGTCGCTGAGCCTTCGGTATTGCGTAACGTCTTTCTTTTTAGTGATTTATCGGTTGAGGTTGCTGTGAAAGCTGGGTATTTTTCCGTTTGCGATGCCGATTTTCGCATGAGCCTTCGATTTTGGGCTGTGAGCCCTTGCCAGACAAGCGTTTCCAGAGGTACT # Right flank : AGGGATGAGTTCTGAGTGCTGAGTTCTGAGGCAAGAATTCAATTGTAGGGGGAGGCCCCTGTGCCTGCCCGGATAAAGCGTTGGTCATCAGCATATCGTGGGGGCGAATCATTGGTTATCTTTTATCCAGCCAGCCCAATCCTGACCTGATGAGCTACGGGGGTTTGTTTTTTTCTGTTCTACTTTATCGTTTCCGCTGACCAACGTTCAATAGGCTTGTTGCCTGAAAACACCATGTATTCATCCTTCACCTCCCTCTCCATAGCCAGGTTCCGGTTCACTATTGAACCGACGGAAGAAATCAGTCTCCCCGAATACAAAGGTTCTGCATTTCGGGGCGGGTTCGGGCATGCGTTCAAGCGGGCGACCTGTATCACCCGCGACCGGTATTGCGAGCCGTGTATTCTGAAATTTTCCTGTACCTATTTCAAGGTGTTTGAGTCGAAGGTATCGCGCGAGACGGCTGAACGGTTGCGCCTTGGAGGCGACGCGCCTCATCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGACCCGATTAGCTACAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 2189644-2189181 **** Predicted by CRISPRDetect 2.4 *** >NC_011059.1 Prosthecochloris aestuarii DSM 271, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2189643 37 100.0 34 ..................................... CTTGTATACGCGCTTGGGAAACTATCTGTAACGA 2189572 37 100.0 33 ..................................... CGGTATCGGAACACCTCCACTGATAACCGCATA 2189502 37 100.0 33 ..................................... ACTTAAGGAGGAAGTATGCCTGTTGGGTATAGT 2189432 37 100.0 34 ..................................... GCCGCCGCCTCCAGAGCCCCGTTCGCCAATGCGG 2189361 37 100.0 35 ..................................... CCCTTCTTGAGACGCTCAGAAAGCAACCAAGCTCT 2189289 37 100.0 35 ..................................... CGTCATTTTTGATGAGCTTAACAGCTTTTCCTAAC 2189217 37 86.5 0 ..............................CG.G.GA | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 98.1 34 GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC # Left flank : AAATGCCGAATTTGTTCTGTGGAGGCCAGTTGTTCCGACCTCCGTGAAAAACGCTCTGGAGAGCCTTTCCTGGCGCAGGTTTCCAGTGGGTGGGTGTAGGAAGACCCGATTGAGTAAGGGGAAGGGATGTGCTCTGTGTTAGGTGGGAAGTGCTGAGTTCTGAGTGCTGAGCAATGAGTTCTGAGGGAATCCCAGAATTCAGCTGTAGGGGGCGCGGCCTTGTGCCTGCGTTTTCTCTGTGTCATTGCGCAAGCGGGAACCGCTGGCTGTTCTTTTGATGTGTTCGGTAAAATGATTGCTAAAAGGATTTACAAAAACAGTTTACGGAAGTGCATCGCAAGATCTGATTCGCAAAAAGATAGAAGAGTAACAAAGAAAAGGGCTTATAGATATTTGTCGGATAACAGAAGCTTGAAAACATGCTTTTCGATTACCAAAAAAAGGAGGTTCGCGCAACAATGCCCGGAAAGTCCCGCCGGATAAAGACTGCAAAGGGGACG # Right flank : AGTGCTGAGTGCTTAGTTCTTCGTGCTGAGCAATGAGTTTTGAGGGGATGCCAGAATTCAGCTGTAGGGGCAGGCCCCTGTGCCTGCCCGGACAAATGGTCGGCTATCAGCGAGGGGTGCAAGACCTTTCGCATTGACGGCCTTTGTTACACGGAGCTTTTTTCGAACGCTCTGTTTTGTGCGTGAACGTGTTCTAAGTGATTGTTTTGTTGGTGTTTATAAGGAATTTGCGATAAAAAGCTCCGTGTAAGCGCGGTAAGTAACTGAAAAACAAGATGTTGCAGTGTTGTGAGAACGACAGAAAATGCCGAATTTGTTCTGTGGAGGCCAGTTGTTCCGACCTCCGTGAAAAACGCTCTGGAGAGCCTTTCCTTGCGCAGGTTTCCAGAGGGTGAGTGTAGGCAGACCCGATTGAGTAAGGGGGATTGAGACAACCAAATAGCATCTTTAATTCTATCTAAAGACATACTTGGTGTAGGTAGACCCGATTGAGTAAGGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //