Array 1 12325-15295 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUK01000021.1 Halomonas pacifica strain NBRC 102220 sequence021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12325 28 100.0 32 ............................ CCGGAGAAACCCGCTCGATCATGGCCAACGGT 12385 28 100.0 32 ............................ AATGGCGCCGTGGTTAATGGCGCTGGCACCCG 12445 28 100.0 32 ............................ TCGATGCCGTTATCGAGACGGACTTTCTTCAT 12505 28 100.0 32 ............................ GGAAGGAGGCGCGACTCGTGCACCACGAAGTA 12565 28 100.0 32 ............................ AGGTCGCCGAAAGAGAAACCGCTGGTGTCGAT 12625 28 100.0 32 ............................ ACCAGATTGCCGGCGAGGTCAAACGCCCCGTC 12685 28 100.0 33 ............................ CAACAAGGGCACCAAGCCGGCACCCGGCGGTGG 12746 28 100.0 32 ............................ AAGAGATGGCCAATCAGGCCACGCGCAACGTC 12806 28 100.0 32 ............................ TCGACGCTGACGTTGACGTGGGTGCAAACGGC 12866 28 100.0 32 ............................ TTGCCGAGGCTTACCCCGGTGAGGTTGTCACT 12926 28 100.0 32 ............................ TCGCGGGTGCGGGGGTCGGCCAGGTCGATCTC 12986 28 100.0 32 ............................ TGAAGAAGGGCTACAAGTTCCGAAAGGGCGGG 13046 28 100.0 32 ............................ CCGTCCTCGGTCATGTTGATGGTGGCCCCCTT 13106 28 100.0 32 ............................ TTGAGCCGGCGGCACTCGCGCCACACGGTCAC 13166 28 100.0 32 ............................ GTCCAACGCCTACGCGACGAGAACGCCCGCGA 13226 28 100.0 32 ............................ GGACTGATCGCGGAGGGCAGGGCGGATGCCAT 13286 28 100.0 32 ............................ TGGCCCATCTGGGCCATGCCGGAGGCGATCAC 13346 28 100.0 32 ............................ ACGCGGACCGGGCGCCAGGCGCTGGGGCTCTA 13406 28 100.0 32 ............................ ATCTCCTGGGTGGTGTTGGCCGCCGTGAAGAA 13466 28 100.0 32 ............................ GACATTGGCGGCGAGCATGCCGGCGGCGGCGG 13526 28 100.0 32 ............................ CCGGAGATCCCTGAGCATCTGACCGCCCCCCT 13586 28 100.0 32 ............................ GTGACGCCAGGGCTGGCCCTCCCTCGCGGTGC 13646 28 100.0 32 ............................ TTGCTCGCTCACCAACAGACCAGGACGTGGGC 13706 28 100.0 33 ............................ CGCCAGGGCGTCGGCGAGATCCTCTCGGAGGTG 13767 28 100.0 33 ............................ AAGGAACCAGCCCGGCGCGGATGGCCGCGTAAA 13828 28 100.0 32 ............................ ACAACAGGGTCAGCGAGTCACCCCCACGCGAT 13888 28 100.0 32 ............................ ATCGCCACCCGCCGCTCGGCGCTGATCGCCCG 13948 28 100.0 32 ............................ GGCCGACTCGGTGGCCGCCTGTAGCTCGGCCA 14008 28 100.0 32 ............................ GAGGAGCTGGCCACCAGCTACCAGCGCATCCG 14068 28 100.0 32 ............................ CTGGGCAGCACCGGCGGCCATGCTGCTATTGA 14128 28 100.0 32 ............................ TCGGCTCCAGCCGGGATGCGGGCACCGGTGCG 14188 28 100.0 32 ............................ TCAGCCTGCATATTCCGCGCTGTTGCGCAGTG 14248 28 100.0 32 ............................ ACCAGCAGGATATCCCCCGGCCGGGCGTCGGC 14308 28 100.0 32 ............................ TCCCACTTGAGGGACTCGACCTGCACGCCATC 14368 28 100.0 32 ............................ CGGGGAAACCCGTTCGATCATGGCCAACGGTC 14428 28 100.0 32 ............................ TGCAGGGCCGGGCATTCCTGCTCAAGGGCGGC 14488 28 100.0 32 ............................ ATGGCGTAGGAGCTATTTTCCATGACGTTGCG 14548 28 100.0 32 ............................ CCCAGCCCATCGACGTGATGGCCCGCCGGCCC 14608 28 100.0 32 ............................ AGATCGAGAGCGAGAAGCGCCACGCCGCCAAG 14668 28 100.0 32 ............................ CTCAGCCACCATCGCGCAATAGTGACGCGCCT 14728 28 100.0 32 ............................ TGGGAACGCGACCATCCCCAGCTACTCAGCCT 14788 28 100.0 32 ............................ TACAGCGATGTCTACGCCGCGCTGCGCGAGGT 14848 28 100.0 32 ............................ ATAGAGGCCGCCCTGAGCGGCCCCGGTGGCGG 14908 28 100.0 32 ............................ TGGATGACCACGCTCTTGGACGACATGGCGGC 14968 28 100.0 32 ............................ AGCGTGACCCAGACGGCGACCAACGCCTATTG 15028 28 100.0 32 ............................ TGCCTCACGCAATCTGCGGTCCCTCGCCCGCC 15088 28 100.0 32 ............................ AAAGCGCAGGAGGAATACCGCGAGCAGGTCGA 15148 28 100.0 32 ............................ GACTGGGGCAGTTCCTGGGACTGGTCCTATAG 15208 28 100.0 32 ............................ GTCCAGGGCGTGGGTGGATGGAGGACCATCAG 15268 28 89.3 0 .....................CT.A... | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.8 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGATTGGAGGAACTGATGGCGATCCCGTGGCTCACTGGTATGCGCGACCACGTCACATTGGATCCTGTACAAGCAGTCCCCGCTGAAGCGCAGTACCGGATTGTTCGGCGCCGACAGTTCAACACCGGGGGCCTCAGCCGAGCGAAGCGGTATGCACAACGACACGGCATTGAGGTCGAACAGGCGCAGCGCTTGATGGAGGCACCTGCCGCGCGGCAGATCGCCCTGCCTTTCGTGCAGGTCAGCAGCCGCTCCAGTGGGCAGCGGTTTGCGCTATTTATCGAGCATGGCCAACCACAGTCGCAGCCTATTGCGGGTCGCTTCAACTATTACGGATTGAGTGGTAAGGCGACGGTGCCCTGGTTCTGACCCTTTTTACGGGCGCCCCTGAGCGGCTCGAAAAATCAAGAGGTTAGTGGCGCCTCTCTGAAAAGGGAGGCGTTGTCCTATCAAGCCATTGCTCTTTAACAATCAGTAGCTTACCTTTAAATCGTTCTA # Right flank : ACTTCCTCTCTGGACGGATCTTGGTCAGCGCCGTCGTCACCGTCGAGTAAGCGGCGTGATATTGCCACCTTGGAGCAGTTGCCGCGAGCAGCTTGTGCTGACTTATGGGGGATTGGGAAATTGGCATCAATGGGGGCGGTGATGGCCCCCATGGTCTCCCAGCCTGTTAGGCTTTAGGCAAATCCCTACCGAGGAGCCCGCCTATGTCCACCGAGTCCCCTTTCGACAAGAGCCTGGCCGCCATCGATGCCCTGCATGCCGAGGATCCGCGGCGTATCGAGGTGGAGGGCGAGTCGTTGCCCCTGGAGCTATGGCATGGTCGGCGCATGAGCGCCTGGCTGACGCGCCTGGTGGAGGCCCCCGACGAGTTGGTGCAACTGGCGGTGCGGGCCCAGCATCTGCAGCGCTGGCAGGTGCCGCGTGGCGACTATCCCGAGGGGCGAGTAGGTTACCTGAGCTGGCGGCGCGACCAGGGCCGGCGGGCGGGAGAGACCACGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //