Array 1 7382-6255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVS010000013.1 Escherichia fergusonii strain YC114-2 NODE_13_length_66749_cov_49.137402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7381 29 100.0 32 ............................. GAGAAAATTATTTCTATCGTTAGTCAATCGGG 7320 29 100.0 32 ............................. TGATATAGCCAGAATATCTGGCATGAATCACA 7259 29 100.0 32 ............................. TCCTGCACCTTTAGCCTGTAGTTTTTGTGCCA 7198 29 100.0 32 ............................. TAATATTGCATGGGTAGGTGAGGTTAATGGGG 7137 29 100.0 32 ............................. TTTTGCCGGGTGAATTTCATAAATAATTCGTC 7076 29 100.0 32 ............................. AATTGCCGACCCACAAAGAGTGCGCAGTACGC 7015 29 100.0 32 ............................. ATCCCTCAGTTCATCACCTTCAAGAAGGAAAT 6954 29 100.0 32 ............................. CACCAGGGCGAGGGCTGGAGGCGCTATCAGGC 6893 29 100.0 32 ............................. CCGAGGAAATCGACGCGCTGGCCCGGTCCGCG 6832 29 100.0 32 ............................. GCTGAACCAATTGCCAAACCCTCACAGGATCC 6771 29 100.0 32 ............................. TATTAAAGGACGATGTGCGCGGGCTATTTAAT 6710 29 100.0 32 ............................. CCAGCCGAACGCAAACACGCATACGCTAAAAT 6649 29 100.0 32 ............................. GCCTCTAACGCAGATCGCGTTTATTGCCGGGA 6588 29 100.0 32 ............................. ACGGCGCATTTTTGAGTTCCGTGTACTGCTCG 6527 29 100.0 32 ............................. GCCTTGGATACGGGCAGGGCGTCCGACTGGTC 6466 29 100.0 32 ............................. AAATTTCATAACGTCAATTTCGACGGCTGCGG 6405 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 6344 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 6283 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2260-3996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVS010000009.1 Escherichia fergusonii strain YC114-2 NODE_9_length_169162_cov_48.687769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2260 29 100.0 32 ............................. AAATTGACCCTCGGGTGATTGTCGTGGGGATC 2321 29 100.0 32 ............................. CGCTTCCTAAATTCAGGAAGCAATGTTTTATT 2382 29 100.0 32 ............................. TACCGGAACACAATCAATACGGCTATTGCAGC 2443 29 100.0 32 ............................. TTGGACCTGGCTGATTCAGTCTCTACGTTATC 2504 29 100.0 32 ............................. CGGAGAGAGGGCTGGAATAGTGGTCGGAGTGT 2565 29 100.0 32 ............................. AGAGATATCAAAATGCCTACAATCCGCCGCAA 2626 29 100.0 32 ............................. GGCTAAAGGCGGCGAATTCGGCTGGGTTTTTG 2687 29 96.6 32 ............................T TTGCCAGCGTGCCGTGATAACATCGGTACCGC 2748 29 100.0 32 ............................. GTCACGATAGCTGCGCAAGTTCTTCTCGCCAG 2809 29 100.0 32 ............................. ACGCTCTCTACAGCATTTCGCCGCCAGTTATT 2870 29 100.0 32 ............................. ACGCTCTCTACAGCATTTCGCCGCCAGTTATT 2931 29 100.0 32 ............................. CAATTAGAAAACGCAATGACCGGCGCGCCCAT 2992 29 100.0 32 ............................. CAGCGCTTGTAGTTGCCGATAAAATCACTGAA 3053 29 100.0 32 ............................. AAAAAACGCTGGCTACAACAGTGTCGGTAACG 3114 29 100.0 33 ............................. TACCAGAATGGAATGCCGTTAAAGTCGTAATGC 3176 29 100.0 32 ............................. CCTTGGCTTTGGCGCATCATTTGTACATAGCG 3237 29 100.0 32 ............................. TCCATGTACCCAACCGCGCTCACTGAACAGGC 3298 29 100.0 32 ............................. ATTTGAAATATCTGGCAGACAATACCGAATAT 3359 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 3420 29 100.0 32 ............................. TACCCCGAAATTAATGGCGATGGGGCGTTTAC 3481 29 100.0 32 ............................. ACATTGCTAACTACAGGCACCGTTTAAACAGA 3542 29 100.0 32 ............................. TCGTGACCGGCAGGGATTCCCCTTGCCTGGAG 3603 29 100.0 32 ............................. GTGATTCTCCGTCGTGTGCAATTATTGACGAA 3664 29 100.0 32 ............................. GCGATCTCTATGTTTTCCCCGGCGCTAAACGG 3725 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 3786 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 3847 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 3908 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 3969 28 82.8 0 ............T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //