Array 1 49749-49110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000001.1 Gilliamella sp. M0320 NODE_1_length_569331_cov_289.111679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49748 29 96.6 32 ............................A TCGCCAGCGTTTTAGCAACGGTTGAAGGGAAT 49687 29 100.0 32 ............................. CGCGCGAATTTTGCTATATATCGCATTGTATG 49626 29 100.0 32 ............................. CCATTCAAAACCTGACCACCTGCTTTGTTCCA 49565 29 100.0 32 ............................. CTTCGGAAAGTGTAAATAAATTAGGTGAATCT 49504 29 100.0 32 ............................. GTTGCAACAAGGGGAGCTAGATAATAATGGCA 49443 29 100.0 32 ............................. TGGGTATTTTGCATTAAATTAGTATTAATCCG 49382 29 100.0 32 ............................. CAGTTAATTGCTGTATTACATCCCCCCCGTAT 49321 29 100.0 32 ............................. TTATGGCGGTGTTGATGAGGAAACCGACGAAC 49260 29 96.6 32 ............................A GCTGCATTAACAACATATTCACCATTAGACAA 49199 29 100.0 32 ............................. TAGCTAGCAGGGGCATATGAACATACTGCGGT 49138 29 89.7 0 ............T..............AA | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : GGACAAAGCTCACAAGCTAAAAGTATCATATTAAATTTTAATAAATGCTATAGCCGTGAACAATTCAATGCTGAATGGGATAAGGAAATTGAAGTTTCAACCCGTTTATCAAAAGATAATATTGATCTTTATTTAGCATATCAACAAGATGGAAAAGTTATTCCTTACTGTAGTAGTAACGAATACGCATGGGAACAAAGCCATATTACAATTAGTGCATCTAAATGGGCTAGAGTTAAAAAAGCCGTCCCACAACTTGACGAACAGCATCTAGAAAAATTGAGACAACAAATACATAGACCAAATGCCATTATTGTGTTAATTGAGACAGAAAAAGAACCTTCTTTTTATTCCAAGGAATTAGGCTTTTATCTAAATTAATTTAAAGTTAAATATTAATAATTTTAACTTGCAATAAGTTGAGTGAATTTCATACAGAAAAAATCGGTAAAAAATTACTCCCTTATATTTCAATTATAAAACAAATGGTTATAATTAGG # Right flank : AGAGTTAGAATCAAATATTAATTAGCTTTGATTAACCCAAGCCAAAATATTTTGGATGGCTGTTTTAGCTTGATGGCTATTTTTCCAACATGATGATCCAGTTAGTAAAGCACCTTTATTTAATATTTCATCTAAATTGCTATTACGTAGTTTTTCGAATGAATCTAATTCCATCTGTTGTAATCTTTCAATAATTTTATCGCCAACATATTTAAGTTGTAGCAATTGTTCTTTTTCTAATTCTGAAAAGGCCATTTTTTCTATCCATTTAAAAAATTGTTATGATGTTACTAATGTGAATTTAGTTTTTTCCATTTCCTGATTTTAGTTCTAAAAGATTTAAATGGCGCAACTGAATTAATATGAATAAATCGTGCCACAGGCCATGCTGAAGGATAAGGTTTTGTCCAATTACGAGCATCTTTAGTAAAAAGCGTATCATCATCTAATGACTCAATCCAACTATTCCAAGTAGTCAGTTTCTGCTTAAATAATTGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : GTGTTCCCTATACACATAGGGATAAACCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67780-68602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000001.1 Gilliamella sp. M0320 NODE_1_length_569331_cov_289.111679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67780 29 100.0 32 ............................. TTCTTTACGTTTTTTGTTATATTCTAATTCTG 67841 29 100.0 33 ............................. GAACTATATTCGGTTCAATAACAACAAATTCAC 67903 29 100.0 32 ............................. AAAATGACAGGTCAGAATACGGAGTAACAGCA 67964 29 100.0 32 ............................. CAATCAGGAACTTTGATTTTAACGGTTTTAAT 68025 29 100.0 32 ............................. AAATGCTTGATTGTGCTGTCATCGACTTTTGA 68086 29 100.0 32 ............................. TTTACTTTTGAAATGGAAATGTTTATTACAGA 68147 29 100.0 32 ............................. TCAGGGGGTTAGTTGACGATAGTGGATCTTTG 68208 29 100.0 32 ............................. GTTGAGGGCGTTTTAAATATTGATGAATTTGA 68269 29 100.0 32 ............................. GGTTTTTATGTATAGTTCCAGCAAATACAGTA 68330 29 100.0 32 ............................. TAAAAAGTGCTAGTATACAAAAAATTGTTAAT 68391 29 100.0 32 ............................. CAATTGAATCCAACAAAAGCAACCCTGTTGAA 68452 29 100.0 32 ............................. CAGCCAAAGAGCATAACAAAGAGGTTGAAAAG 68513 29 100.0 32 ............................. AAACAGACCTAACACCTGATTTTCTGAAACAA 68574 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTATCTGCTGGTGGAATTGAACCGCCCCCTGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTAGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCTCCAAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATGATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGCGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 303195-303583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000003.1 Gilliamella sp. M0320 NODE_3_length_307702_cov_300.941912, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 303195 28 100.0 32 ............................ AACATACGTTAATGAGCCGGTAATCTCACGTT 303255 28 100.0 32 ............................ AATGAAAGAAAAAATTCTAGCGGCATTAAATG 303315 28 100.0 32 ............................ TAGCGTATCAGTTCCCAGACTATCAATTTTAA 303375 28 100.0 32 ............................ GACGAAGTTAAAAGTTATCTAAATGCAGCTCA 303435 28 100.0 33 ............................ GATAGTATCTTTAAATACAACGGAAGAACCTAC 303496 28 100.0 32 ............................ ACAAGTGTTTCGCAACCCGACCGATAGTCATC 303556 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CAACTAATTCCAATAATAAAAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCTGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCACCAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAAATTTTGAGGAGAGGGGTTTTTAAAGCTTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGTAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATATATAAGTGGCAGTATAGGTAACATCAAGTAGTACACTGCTTATTGAGTAGGTTAAAAATAGAATTTTAAAAGCGATTGATGCAATCTGTTTAATATTTATATCGTATGTTATACCCAAAAGTTGAAAAATACATTTTTAAGAATTAAAACTATATTTTAATGATATAACTTTATAATAATATTTACAAAATTTAACAATTAAACTATTAAATGCAGTTGCGTCGATTTTTTTCAGACACTATACTTTACAGATAATTTTAATCGCAATATTTGGTGGTGATTTAGTCGGTTAAGATGAAATAAAGTAAAATAAAACATGAGATTACTTGACAAAGGATGTTAAAATGCATTATAATTTACAACACCCAACACCCAACACCCAACCTGCCCAACTTATAATTTAAATTCATCAAAGTTAAGCTCTCAATATTCATTTTTTGCTATAAGCGAGATCCCACGAAATTTTGCGCGATCCTTGCTTCAATCATTTTTGTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 68245-67728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000002.1 Gilliamella sp. M0320 NODE_2_length_413049_cov_252.493522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68244 29 100.0 32 ............................. CAATTGTATCTTGCTTGTATTCGTCCCAATTT 68183 29 100.0 32 ............................. TATTAAAACATTCCATAACTTCCCTATTTAAA 68122 29 100.0 32 ............................. TTTCACTTCATCAGTATTATTTGTATCGTCAC 68061 29 100.0 32 ............................. CCGAATTATTGATGATGTTAAACCAGTATCCC 68000 29 100.0 32 ............................. TAGTCGGTGTTGATGTTGCTGATGCAACCACT 67939 29 100.0 32 ............................. TAAAACTGAACCTAGTTCGGAACCTTGCTGAC 67878 29 100.0 32 ............................. AGACGCAATACCCATCAGGAATAGGCCCTTTT 67817 29 100.0 32 ............................. GTGTAAGTTGCTCAACGGAGCTTGGCGTAACG 67756 29 86.2 0 .....................C..TTG.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGACGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGCACAGGCGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTGATCGAACTTATTGCTAGAACATCATTACAATTTCACTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAAATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAAGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTATAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAAATTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCTGGCGGTTTTTTATTGCCCAGAATTCCTAAATAACTTACTATTGCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260838-260510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000002.1 Gilliamella sp. M0320 NODE_2_length_413049_cov_252.493522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 260837 28 100.0 32 ............................ TGCCTGGCTTCGAGATTCACCTCTAATACTGG 260777 28 100.0 32 ............................ ACATTTACCGATATAACCACCAATTGACTTGC 260717 28 100.0 32 ............................ ACTAGCCGATTTTGGATAGTGTACAGATCATC 260657 28 100.0 32 ............................ TGCACAAAGTGAAATAGATAGTCTTGTGGCAC 260597 28 100.0 32 ............................ GTCACGTTTTCACTAAAAAACGTACCTGATGA 260537 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGTAGTTTAGTAA # Left flank : AACCTAACGCTAAGTTACCATTAGGGCTTAAAATAAATACCTGCTCACCAACTGATGGTCGCCACCAGGTACGGCTTTTACCAGCACGATGGGTGAACCAAGGTAACCACGCGGTAATTAATTCACCGGTACGGACTTTAACCCGATCACCATTGGTTTGATAAACAACGCCAGGGCGAATCAGGTTTTCAATTTTTCGTAGAATGTCGACTAAGTCGGCGGGATGATAATTTTTCATAACGCCTATAATGAAATTTTATCAAATAAAAATAAAGTAAGCTTAGTTGTAGCAAATAGGCTTACAAATTTTCAAAGAGTTAAGCTAGAACAGCGTGTGGTTTGAATAATGCGATCATTAACTTTCTTTTTACCCTTTTTTTTCTTAAAATAAAAATAACAATAAAATCAATATATTAATTGAGTGGTTAAAAAAAGGGTTTTTAAAAGCCAAATAGCACTTTGCCTTTTTGCTAACAGAGTTTATAGTATATATTGTTCTA # Right flank : AATCAATAATTATTTTTAGTTTTCGCTTTACTTGAATTGAAAAAATCGCTTATACTTTGCTCACGCTAATAGCGTGAGCTATAAATGTTATTATTTAATAAAGGGGATAATATGGCTAATTATAGTGTGGTTAACTCAGCAATTCTTGCTGCGTTACTCGCTTTTTCTAGTCAAGCAGATGAAATTTCAAACTCTTTTGAAAGCCCTTTTGTTGTAAGTAAAAAAAACGATAATAGGGTAGATGAAATAAATACCAATGGAAGTATCAATGCTTTATTAGAGCAAGCTGCCCAAAAAGCAATAAGCTCTTCTCTTAATTTATGTGAAATAATTGACAAGCGTTATATTGAATTAATCAATTCACCAGAAAAACTCTCTGAAAAAATGTTTATTGAGCTAAACAAAATAAACGATATGTTTCTGCTATTAGATACTCTTTTTAAAACAGCTATGGCAAATCAAAGCAAGATTAGCTCGGTACAAGAAGATCATCAGTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 355107-354840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000002.1 Gilliamella sp. M0320 NODE_2_length_413049_cov_252.493522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 355106 28 100.0 32 ............................ CTCAAGATGATATTGACACAGCAATCACGGGA 355046 28 100.0 32 ............................ TTCCGCAAAATCTGTATTTTCGGGAATAATAA 354986 28 100.0 32 ............................ TAAAACGATAATGCCGAGCCATTTTGCGATGT 354926 28 100.0 32 ............................ TAGCGCTCGCGCTGTCGCGGCTAAGGTAACAT 354866 27 92.9 0 ....................A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : ATCAGCTAGTTCCAATAATAAACGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTGGCAACGTGCTGACAACTGAGTGAGGTTAGCATGACAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGTAGTCACATCGTGACCACTTGCGTGGTCGCCGCAGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTGATCACCGTATAGAACTAGTCACCAAACAACAAAACGTCCGAAACTCAAACAACTAAAAATTTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TATTAATTATTTCTAAAAAGATTAGGAAAAATTTTTCAAAAAGCTAAAAATCAAAATTAGTTATAGCTTTGTTAAATAAAAAAACCCCCAGTAATTGGTTGTCCAACTATTGGGGGTCACTTCATTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAACTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAAGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGAGTTGAGGTACCATGGGTATT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 367850-367702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000002.1 Gilliamella sp. M0320 NODE_2_length_413049_cov_252.493522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 367849 28 100.0 32 ............................ TCAATAATGTTGGCATGGCGAAAGATTTGTAT 367789 28 100.0 32 ............................ TACAAATGTATTATTCATTTTTATTTACTCCC 367729 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : AGGTATTGAAGCTAAGGATAAGAAAAATAACGTTAGGGCGATAAAAACGATTTTGTGGCGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGCATAGAAATAACCACCAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : TGTTACAATCTCTTTATTATTTATATCGTATGTTATACCCCAAAATTGAAAAATACATTTTCAAGAATTAAAACTATGCTTTAATTACCTAACTTAATAATAATATTTACAAAATTTAACAAATAAACAATTAAATACTATTGCTTAGATTTTTTTTATGACTATACTTCAAGTGTTTATAATAAACAATATTCGACGGATATTTAGCCGATTGAAATAAAATAAAACCAAAAAAATCATATAATTACTTGACAGGAACGTCAAAATGCATTATAATTTACAACACCAAACACCAAACACCAAACCTGCCCAACCTATAATTTAACGTTAGCAAAGTTAAGCTCGCACGATCTATTATCTCACTACAATTTATTTTTCCAGCAAATTCGGCAAGGGTTTTCAACATTTCTTAGTTTAGCCTTTTTATCTCGGCAAATGGTTTTGGTATTAACCGCGGTTGTTTTACAGTCTATCTCTTTTTCTAATTATGCATTAACCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6834-7041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000012.1 Gilliamella sp. M0320 NODE_12_length_24161_cov_236.059185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6834 28 100.0 32 ............................ ATTCGACAAATACCGAACCTCTGGATCTTGTC 6894 28 100.0 32 ............................ AAATAATTTTAAACATATGCAATCTAGTTCTC 6954 28 100.0 32 ............................ TGATAAGAAGAAAACTAAGAAAACCAAGAAAA 7014 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : GTCTATCCTTAGCTATTATTTTTTAGTTCTTAGGTATTGAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAGCGATTTTGTGGCGCGACATTGGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGACGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCGCAAAACAACAAAACGTCCGAAACTCAAAGAACTAAAAAAAATTGAGGAAAGGGGTTTTTAAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAACACTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : AGTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATCTACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTAATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATTGCAGCATTGTAATAACTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACGTTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCGTGACCAAAGGCTAACATACGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83-649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQD010000013.1 Gilliamella sp. M0320 NODE_13_length_21156_cov_244.593280, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83 28 100.0 32 ............................ AACCCAGTTTTAAATTTGTGTTAATAAGAGTC 143 28 100.0 32 ............................ CCGTTGATATTTACCAGCATTACGTAACCAGT 203 28 100.0 32 ............................ CGTTACCTGTTTGATATATGATTTTATGTTTT 263 28 100.0 32 ............................ ATATATCCACCTGAAAAATACCCAGATTGAAC 323 28 100.0 32 ............................ AATTCAGAATGAGACTGATCTAATAATGATTT 383 28 100.0 32 ............................ TGGGGCGATCCAAGGGGGTAGTTATCGCCGTT 443 28 100.0 32 ............................ TCATATGATTCACGTACATAAATCTTTTTGAT 503 28 100.0 32 ............................ TTAAGCCTTAGCGATTGTAGTAGCTAAGGTTT 563 28 100.0 32 ............................ GCAGGGATAGTGCACAAGCTTCAGCTTGTGTG 623 27 85.7 0 ...C...A............C...-... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTTACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTAG # Right flank : ATTAATTAAAATTATAACACTCGAAATCCACCAAACTAAAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCAGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCCTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATGTTACCGGGTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATCGCTTTGATTTTATTAAATATTATTTTTTATCCCTTGCAGTTAACC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //