Array 1 1864677-1865652 **** Predicted by CRISPRDetect 2.4 *** >NC_010475.1 Synechococcus sp. PCC 7002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1864677 36 97.2 37 A................................... AGACGAACTCTCCGTTCCCATCGCTGATTTGCAGGTT 1864750 36 100.0 35 .................................... ACGTAATCAACCTGGGGCGAATAATCTTTCATAGG 1864821 36 100.0 37 .................................... TGAGGCGTTGAATGTTGTTGTTGTTCTTTGATTAAAT 1864894 36 100.0 36 .................................... GGAGAATGGAGAAAGAGAACCACGCTTCACAGTTGA 1864966 36 100.0 35 .................................... TAATGGGCAAGCTCGTGGGTTTCTTCTTGCCAGGA 1865037 36 100.0 38 .................................... ATGGGGAGCTGCGGGGTATTTTTCACCCATTCCCAGAA 1865111 36 100.0 35 .................................... CAGAGGAACTTCCGGTGGATGTCCTTGCGGAGTAC 1865182 36 100.0 36 .................................... GGCGGCACTTGGAGCAGCTGTGGCAGTGACGGCAAA 1865254 36 100.0 36 .................................... AGTAAATCCTCGAACATTGGCTTAGTATTTGAGTGT 1865326 36 100.0 38 .................................... GCGACCAGGGTGCTGTAATCCGTTTCGTTTTTTAAGGT 1865400 36 100.0 36 .................................... ACTTTCGAGAGGGCGTTAGCAATACAGGTTCTTCAG 1865472 36 100.0 37 .................................... GACGATTGAGAGATAAATGGCTACGGAATTATGCCCA 1865545 36 100.0 36 .................................... GGCGGCTGTGTTGGCGTAGATCCAGAAAAACTTAAT 1865617 36 94.4 0 .......G............A............... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.4 36 GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : AAAAGCGTTGGCGTAAAGCTTATAAGCTCCTCGAAGGCTATGGGGAACGCATCCAATATTCGATTTTCCGCTGTTGGTTGACTCAGCGATCGCGAGAAAAGTTACGCTGGCAATTAGAGGAGGTGCTCACCAAGGAGGATGATCTTTTACTTATTCGCTTGTCACAACAATGTGTACAGGATTTACCCAAATATAACCGTCCGAATACTTGGCTCTTTGATGAACAGACATTTAAGGTACTCTGAAATGTTGCAAGCAATGGGGACTGTTTGGGGCGATCGCCTTTTTAAAATCGCTCAAAGAATTGGCTACTGGGCTTTTGCAATTTATCAGCAGCGGCTTAGATCCCTGTTTTTTCTGAAAACGCCTACCCTATCTAGGTTTCAGGAACATCCAATCAAGCTAAATTTTCTTCAAAGAGCCTCAGCTTGCTATGATTCACTAGGAACCTTGCAAAAGTTACCCAGAAGTCTTGCTCAGACTAAATTCTAGGACGCGCT # Right flank : CTTTAGGGCGTCTAAATCCCGGTTTATCGTTTCAATATTCATGGCTTTTCTGGCCTATATTTGGCCTAAGCCTTACGAGGGGACAGGCATCCCAGGCCACCATGAAAAAGTAAGCAAATTTTCCTTACGCTACCGATAGCGCAATGGAAATTTGACCTACACTGTAAATATGGCTCGAGGCAGATTTGAACTGCCGACCTTGGGCTTATGAGTCCCCTGCTCTAACCAACTGAGCTACCGAGCCAAAACCGTAAACGATTATAACTATAGCAACTGCTTGTGTCAAGGGCTTGGTTTAGGGTCATTGTAAATGTCCAAACTTGAGTACAAAACAAGACTAGCCGCTGCCCACATTAACCATGTCTAAATTGCCCAAAATTGACCGACAGCGGGAACACCAAGCCAACGAACGTACCTTTCTGGCCTGGTTGCGCACCTCAATCGCCCTAATTGGCTTCGGCTTTGCGATCGCCCGTTTTGGTTTTTTTGTGCGTCAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 54528-61299 **** Predicted by CRISPRDetect 2.4 *** >NC_010480.1 Synechococcus sp. PCC 7002 plasmid pAQ6, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================== ================== 54528 36 97.2 44 T................................... AAGCAGAGACAGGGATTGAGAGAACACCAGCAAACTCCTTATTG 54608 36 100.0 37 .................................... TTAGAGGGCTTCTCTTGAGCTTTGTTGGCGAGTAACA 54681 36 100.0 38 .................................... ATAAGGATCTATTAAAAGCAAATCAACATCTATTTTAA 54755 36 100.0 35 .................................... TGGTTTACTGCTGAGTTCTTGGTGACTTACACCAA 54826 36 100.0 43 .................................... ATGAGTGCTATGGGTTATCGATCCTATGATCAGCTATTGAACC 54905 36 100.0 35 .................................... TTTATTGTTAAAGCGTTGAGCTTCCTCAACAAGTT 54976 36 100.0 37 .................................... GGTGAAGGAGAAAAACTTCCCTGAGTTTAGTAAGGAG 55049 36 100.0 41 .................................... TACTGCAGAAGTCCGCTTTGGACCCGATGACTATCAAAAGA 55126 36 100.0 38 .................................... CAGAGATTGTAGATCATATAGACTTTCTATGGAACTAT 55200 36 100.0 42 .................................... ACAAGAAATGGCTGAATATCTTGATGAATTACTTTCTGTTAA 55278 36 100.0 40 .................................... TTGTAAAGATGACCCTACGGTTAAAGAATTTTCTAGAATC 55354 36 100.0 42 .................................... TTTTTTCAGTCACAATCAGAAAAATTCTATAAAGAATTGAGT 55432 36 100.0 40 .................................... TGAGAGAAGAGAAAAAGTATGTTCACGCCTTTGTACAAGG 55508 36 100.0 40 .................................... GAAACAATATCAGAGTCAACTCCAATAGGACCACCAAAGA 55584 36 100.0 39 .................................... TTACGGGCACGCCTGTGGCAATTCACCTTTGACGAAGTG 55659 36 100.0 36 .................................... AGATTAGCTAGAACCTCACGCAAGGGACTAAAGTGG 55731 36 100.0 46 .................................... CACAGTTGCGTAAGCTCTTGGTGAGACAACTAAAGGCCCATGCCAA 55813 36 100.0 40 .................................... TTTGTTCACCATTGACGCAGTATTGCGTCTGGTAAACTTA 55889 36 100.0 35 .................................... TGGAATTGTTGGAGTCCCCCCCACTTATTAGCGGC 55960 36 100.0 39 .................................... ATCGTGTTAGTCAAGTATTTATATATGATTACAGCTACT 56035 36 100.0 40 .................................... AATAGCTAATGATAGGCAGGGTTGCGTCTGCCTTACCAAC 56111 36 100.0 39 .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 56186 36 100.0 39 .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 56261 36 100.0 38 .................................... GTCGCTGAACGGGAACCCGAACCAGAACTAGAGGAGTT 56335 36 100.0 38 .................................... GTCGCTGAACGGGAACCCGAACCAGAACTAGAGGAGTT 56409 36 100.0 37 .................................... ATTGGTCTCAATATGAGCTAACTGCCGATCAGTTAGA 56482 36 100.0 45 .................................... CGCATTAGCATTCTTACGGGCAATGAATAGTTTTTCCTCAGGGAG 56563 36 100.0 40 .................................... AATGACCTGTCTCTTCAGTACGGGTAGGTCAATTCCCGTA 56639 36 100.0 42 .................................... CGGGTAAAGGATTGGTTCGATACGACTATACAGCTCAAAAGG 56717 36 100.0 48 .................................... TTGATTACAGCGCAATGACAGTGCGTGAATTGCGTGCGCTGTGCTCTT 56801 36 100.0 40 .................................... TTCAAGTGAAACGCCGTAACAAGTCCGTATTGGCCAACCT 56877 36 100.0 36 .................................... TTATGTTCGGTTTTATCTCTAATTTATTCACTTCTA 56949 36 100.0 40 .................................... CGGTTGATTCTTTGGTACAGTTTGACCAAGTAACTACTGC 57025 36 100.0 43 .................................... GTACATTTATGTAAATAGCAATTACCTAAATGCTGAGCTGCGT 57104 36 100.0 39 .................................... AGGTTCAGCCAAATCAATGGGCTGGAGGAAGAATACGTT 57179 36 100.0 72 .................................... CGAGCACGCGCTGGCGCTCGACGCGGCGCCGTCGATCTCGCTGTTCTGGCTCGCCACGCGCCCCGACGGCCA 57287 36 100.0 42 .................................... AATTAATGGTTTAGTTGATGTAACTCTTCGTCTTAAGGCTGA 57365 36 100.0 41 .................................... CTACCTCAACTTTTGTAGACGGCGACGGAAAACGACCTGTT 57442 36 100.0 35 .................................... GATTTTTAATCCTGTAATGTGTCGAGGGTGCTGCC 57513 36 100.0 38 .................................... TTGATGTGTAATTGGGAAGACGTCGCGGCTATTGAGGC 57587 36 100.0 39 .................................... TCTACTATGAATTAAGTCATCTAATGACATGTGATGACT 57662 36 100.0 43 .................................... GTACATTTATGTAAATAGCAATTACCTAAATGCTGAGCTGCGT 57741 36 100.0 39 .................................... AGGTTCAGCCAAATCAATGGGCTGGAGGAAGAATACGTT 57816 36 100.0 72 .................................... CGAGCACGCGCTGGCGCTCGACGCGGCGCCGTCGATCTCGCTGTTCTGGCTCGCCACGCGCCCCGACGGCCA 57924 36 100.0 42 .................................... AATTAATGGTTTAGTTGATGTAACTCTTCGTCTTAAGGCTGA 58002 36 100.0 40 .................................... CTACCTCAACTTTGTAGACGGCGACGGAAAACGACCTGTT 58078 36 100.0 35 .................................... GATTTTTAATCCTGTAATGTGTCGAGGGTGCTGCC 58149 36 100.0 38 .................................... TTGATGTGTAATTGGGAAGACGTCGCGGCTATTGAGGC 58223 36 100.0 40 .................................... TGACCGTAAGTGGGATCCGACGTCTTTGGATGTCAAAGTC 58299 36 100.0 42 .................................... CTCAAGAAAGCCACCCGTGTTGGTGAAGTTATCATGGGTAAA 58377 36 100.0 42 .................................... TTCTCCTACTTCTTTTAAGAAGAAAGCCGCAGAAATGTGTGC 58455 36 100.0 43 .................................... TTTCCCTCTACAAAGAGATGACCCGTAAGCCCATGAGCCGCAA 58534 36 100.0 41 .................................... AAAAAAGTTCTAGGGGCTTTTGGCTTTCTCAAGTATTTGGA 58611 36 100.0 36 .................................... AGATCTTTATTGAGGAGGAGGTGTTACAACCTCCAA 58683 36 100.0 40 .................................... CCCCGAAGACGGGGGTGAAGTGTTCTACAGCTGCCTTCAA 58759 36 100.0 42 .................................... GACTACGGTAGCTACGGTTACCTAGTCTTCGCTAGAGGCGAA 58837 36 100.0 36 .................................... GCCTTTCGGCTTTTAGACGGACTCATACTACCTCCA 58909 36 100.0 42 .................................... GGATTGAGGTTGACGTACAACCTATAGAAAAAGAGATAGATG 58987 36 100.0 36 .................................... AGGGGAATGGATTCTAGATCTGATACCTTGGGAATA 59059 36 100.0 38 .................................... AACCTTATAGCCGTAAGCCTATCCTCAAGAAAGGTAAG 59133 36 100.0 46 .................................... TTTATTCAAGATAATTGTGTTGCAGAAGTGATTGTTAGAATCTAAA 59215 36 100.0 42 .................................... GTCCAATGGGGACTGCATTATGCAGGGGGGTCTAAAGAAACT 59293 36 100.0 43 .................................... AATACTCCGTTTTAGGATTAAATGAAGCTTATTTGGCTTCATT 59372 36 100.0 39 .................................... TCAGCAGTGAGGGGAGCGGTAGCAAATAGATTAGAGATA 59447 36 100.0 41 .................................... CATTGAGTGAAAGCGTTGTCTGTTTCCAAGAAATCTACTAC 59524 36 100.0 38 .................................... AGGCTTAAAATTATGTCTAACGTTATCACTAGAGAAGA 59598 36 100.0 43 .................................... TCATTGTCACCTTCGTTAGAAGCAGCCCACACTAGAGGATCTA 59677 36 100.0 38 .................................... TATGTCTAACATTTGTGTCGATTTTGATCGTGCTTGGG 59751 36 100.0 38 .................................... GGTTCCATTGATTGTTAGCACAGGTTTATTTGATTATT 59825 36 100.0 40 .................................... TAACCCACTTTTCCTAATCCGACTCTCCCCACCCTGTCGG 59901 36 100.0 38 .................................... ACCCTCAAGGAGTTCTCAAAGAAGGCTATTCTGATCAT 59975 36 100.0 39 .................................... TTAATTCAAACTGAGGACGTGCCCTCAGATATGAGAGAA 60050 36 100.0 41 .................................... CACATTTACAGGAAAACCAAAATGACTACGAAGCAACAAAA 60127 36 100.0 45 .................................... CAACTGCGTTAAGCCCCGCACTACAGCACGCTGTTTTGAGACAGC 60208 36 100.0 39 .................................... TTTTGAAACAATCAAAAGAGAGCAGCGGCCTTTATATTC 60283 36 100.0 35 .................................... ACTCTGGGAAGTTCTTCTCCTTTACCCCAGGGCGA 60354 36 100.0 41 .................................... CTTCAACTGTTGCGCAGACAATTGCTGCTGCTCCTCAGTAT 60431 36 100.0 38 .................................... AATAAACCCACTGCAAAGGAATATAAATCGCTTAGAGG 60505 36 100.0 42 .................................... TCAAAGCGCATACCTTGAATGTTAGCAGTGCCCTTAAGAGCC 60583 36 100.0 41 .................................... ATATAAACACCCTGTACAATTACGATTTAAAATCGTCTCAA 60660 36 100.0 39 .................................... CCGATAGAACCCGACAATCATTTCCGCGTCTTGTTCAAT 60735 36 100.0 41 .................................... TTCTACCTGAACTGGAGCACTATCTCAGTGAAGTCAAGGCA 60812 36 100.0 41 .................................... ACATGTTTGATCTAACTAATGGTTTAGTTGATGTCACTCTT 60889 36 100.0 39 .................................... TGCTAATCTAAAAGGGCTATCAATTGAGATAGCCCTTTT 60964 36 100.0 40 .................................... TCGTCAAGAAGATTGGAGACTGGGTTATTCTCCAAATCGA 61040 36 100.0 38 .................................... TTCGGCTAACATGTGAACTGGCAGGGCGTGAGCCCATA 61114 36 100.0 39 .................................... GTCTGAGTTGGATAAAGCTGATTGGGATATACAGAATCA 61189 36 100.0 39 .................................... TTAGCACTCTTCGTATTCCCTCTGAAGTTCGCAAGGTGG 61264 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================== ================== 89 36 100.0 41 GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Left flank : CCTAGGGAAAGGCTCCGGGGAAAACTATCAAAAGCCAATATCTAATGCAAAACCCCAAAACTCTAGCTAATCAGCAATAAAGCCGAATTCTGGGGGGACTAAAATTATTTTCTTTTTGTTGATTTGTGGTGCAAAACAATCTAAGGGGCGATCGCCTTTTGAATTTTGCCCCCAAGAACCATTCCAGCAGCCAAGCTTAGGGTTGGCGATCGCCTAATTTCCCAATGCTATAGACCATGGTCATGGCACACATGAGCGCCCAAGTACCATCGAAACCGACGTTAATCCGGTGGCGCAGTTCGGCTTGGGGTTGATTGGCCTCCACTGCCTTAACCAGTTCGACGTAATCGCGGTACGTCCAGTAGCAAAAAAAGAGTGTCAGCCCGAAGGAAGAAGCGGCAAAAAAACGAAAGAGATTTTTAATCATTGATTAATTTTGAATGGCTTTGCTGAAAAAAAATGGCGCGCCTAAAGATTAGTTGGCTACGCCATATCCATTA # Right flank : CCGCTGGCCTTTCAAAGGCTTGTCCGGAGAGAACTCCAGCGAGCATTTGCGACCGATAGCAAAATTTTACCAGGCTCCAACAGAAAAGGCCAGAAAAAAATCCCTAAAACCCTTATCAGGTAAGCTTTCGAGCAATCACATGAAGTTAATACTGTTTCAGCCATTTTCTAGATCAGTCGCTAAATAATCGTTGACGAAGGTGGATCGCTCAGAGAAGGTGACCCCCAAATTTCCACCTGAGAGAGAGTATGACTCGAAATCGGATAAAACCGCAAACTGTCCCCTTGATCCTCTTTGTAATAACGCGAAAGTCGTTTTTTCAACTCTTTATACTTTTTGGGCGATAAATGACACTCAAACACAGAATATTGAACACGTACCCCATAACCTTCCATTAGATCCGCGATCTTTTTGCGACGCTTATCATCACTAATGTCATAGGCCACCAGATAAAACATCAGCGGATTTCGTAGGGAGCATAACCTAATACCGGACGGTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 12085-15035 **** Predicted by CRISPRDetect 2.4 *** >NC_010478.1 Synechococcus sp. PCC 7002 plasmid pAQ4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 12085 37 94.6 36 ..............G.T.................... CGCCACTGAAGCAAACGTGAGCAACGCGGAAGCCAA 12158 37 100.0 34 ..................................... CAGCCCACCCAAGATATCCCCGTCCGTGGGTCTT 12229 37 100.0 34 ..................................... TCTGCCACAAAAATCAAAGCCCCCATTTTTTCTT 12300 37 100.0 42 ..................................... TCGGCGAGGTCACCAAGGTCGGCTCCTGCCGCCGTGATTGAA 12379 37 100.0 36 ..................................... GCGGGAACAACTTTGATGCGATCCGAAGTACCAATT 12452 37 100.0 35 ..................................... TTTGCCTTTTTGTTAATCTCCGCCATCATTGCAGC 12524 37 100.0 38 ..................................... TTTTTTATTCATAGTCCTAATAGAAAAGGCGATGCCCT 12599 37 100.0 36 ..................................... TCGCCATGGGCCAAATTAGAGCGCCAAGGGGAGAAA 12672 37 100.0 36 ..................................... CCGTTTCGATTAATTTCAGAGGGTGCAATTTGAGTG 12745 37 100.0 35 ..................................... AACGACAAGGCTTACAAGGGGGTAATTCGTGATTT 12817 37 100.0 37 ..................................... TAGGCAGGGGAGTGAAATGGTTTCATGTTGGGCTCAT 12891 37 100.0 34 ..................................... CAGTAAGATGAAGGAGGTGGTGCATATCACTTGC 12962 37 100.0 37 ..................................... CTAGATTTGCTTATAGAGTTGACTGTTATCGGGACTT 13036 37 100.0 40 ..................................... ATGATGGCGTTGCCAGCGTTCTCGGATTGGAGAATTTAAC 13113 37 100.0 37 ..................................... CCCTGAGAAGTTTGGCTGTTTTGCTGACTGCGATCTG 13187 37 100.0 37 ..................................... CATCGAGGCAGTAGAGCAAATCGCAGGCCACCTCATA 13261 37 100.0 37 ..................................... TCATTGGGGTCTGCATTGGGGCCATCGCTATCGTCCT 13335 37 100.0 37 ..................................... TGGGACGCTCCGTAAGGTTTGGAGAATAGGGTCTAGT 13409 37 100.0 39 ..................................... CACTTCGTCGCTGATTGTCCACCGACTTGCGAGGGCTGC 13485 37 100.0 36 ..................................... ATGCCCTTCTCTCATCGATGTTTGATTAAATCATCT A [13498] 13559 37 100.0 37 ..................................... AAGCATTTTCCCTGGTCGCCGCTGGTAGCTTGTGGCA 13633 37 97.3 33 ..............G...................... GCGTAACTGTCCTAATTGTTTCTCAAGGCTTAA 13703 37 97.3 34 ..............G...................... TGGTCTCCGTCTCGCAAACGTAGTCGCCGCTAAT 13774 37 97.3 34 ..............G...................... CCCTAGCTTTCGCCAACTGCTGCGGCAAATCTTC 13845 37 97.3 34 ..............G...................... CAGTGCGATTCAGCGGTGGGATAAAGAAAAATTG 13916 37 97.3 34 ..............G...................... CCGATTCGCAAGTTTCATCATCAATCCCCGTGAT 13987 37 97.3 33 ..............G...................... CGGAACGTCGCGCCGAAACCATCGCCAGGACGG 14057 37 97.3 36 ..............G...................... TGATTATGTTCAAGAAATCACAACGCAAAAGAAAAA 14130 37 97.3 35 ..............G...................... TCAAGCGAGATACCCACCAGAAAGCCTTTGACCTG 14202 36 94.6 38 ............-.G...................... GCGGCGGCTGATGTCGCCAATGCGGTTATCGATGGCCA 14276 37 97.3 38 ..............G...................... TCCCAAGGGGGACAGGGCGGTGATCCTCGATGTTGCGT 14351 37 97.3 34 ..............G...................... ACTCGTCTATATATACAGAGATTACTACAGAGAT 14422 37 97.3 35 ..............G...................... CGGGAAAGTAGCCTGTTTTGTGGAGAATTGCAGGC 14494 37 97.3 35 ..............G...................... TCCTTCCAAGTCGCAAGCCAAACTTGCTTATCCTT 14566 37 97.3 36 ..............G...................... CACGCAGCACAATGATGTGACCACTACGGGTGAATT 14639 37 97.3 36 ..............G...................... GATTGGTTTGGTCGGTCATGGTCTGCCTTGATGGCG 14712 37 97.3 34 ..............G...................... TCAATCGTAGCGATTCAGGCCCAGGCGGTAGCAA 14783 37 97.3 35 ..............G...................... TTCTGTTCCGCCTCAATCGCTGCAAGGGCATCCTG 14855 37 97.3 34 ..............G...................... CCAACGCGATCTATCACGGTTGCTTCGATAAAAA 14926 37 97.3 36 ..............G...................... CCTCTTTGAGACGAAAAACAGCGCCAACGCCTGGGT 14999 37 97.3 0 ..............G...................... | ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 98.5 36 GTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAAG # Left flank : TGTCTGCTCATACTCAGCTTCAGTCTCGATGACCTTGGGCATAGCATCCATTAGAAGTTGGGCATAGTTTTGTTTATCTAAAGTAGGGGTCATTTTTCCAAGTGTCCTTGTCGTACTCAGCGTGGGTCAAAAAATATTTGTAGTAAACGGTTTGAGATGGGTAGTCGATGCCAACGATTAAGCGATATTTATTCCCCTTGATGTTAAATACAGTAAAATTTCCGACGGCCTCCGCGTCTCGATAGGTTTTCCGAACCTCTTCTAGATTTTGCCATTGGGCCTGCTTGATCACTGCATACCAAGCATCTAGGGCTGATTTACTATCAGAGTATTTGGCTGCATCTTGCCTTAGTTTGCTGATGCTGATTAAGTGCATATAGTCCTTTTCCCCAATAGTAACCGAATACTCTCAAAATGAGAGTATTTAATAACAACTTCCAGGGCTGTTGTCCAGGTTAATAAAGTGGTAACTATCGCCATACATTGCCACGTGGACAAAT # Right flank : GGCCCGCGATCCAGAAACCTGACGATACCTAGCTTTGCGAAGCTTATTTGGCAGATGTATCCCCATGAATCTGATTTTACCAACGATCGCCACGCAAGTTGTTGACCTTCAAGTATCGAAAAGTATTGAATTTTCAAGGTTCTAGAGATTTTGGCGAAGTCCCTAGGGTTTTTGGTCACGCTATGGGTTTGCCAACTTGATTTTAGGTCAAATCTAAAGAATGATGCTACCTGGTTTTTCTGGTGTAGATGTACCGTAGGCGATCGCCTTTTTAACAGCAGTGGCATCAAGGATATAGATACAGACAGCATCTTCATCTGGTTTGATCAATTTTTCTATCGAAGTTTGTAATTTTGCAAATTGCTTTGTCGTCAGAAAACATTCAAAAACACTAAATTGTTTCCAAGTGCCATAACCCGATAATAAATCAAACAAGCGTTTTCGGCGCTTATCCCCTGCCTTTGTAGAAGGTAAATCGTAAATGATCAGGTAAAAGAGAG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAAG # Alternate repeat : GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //