Array 1 363769-366247 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023410.1 Acetobacter aceti NBRC 14818 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 363769 36 100.0 30 .................................... TGTCCGCCAGATCACGCCCGACCTCACACG 363835 36 100.0 30 .................................... GGCCGTCGCCGGGCGTGTATGGCGTCACGC 363901 36 100.0 30 .................................... ATGCATGTGATGCTGCTGGTTTGAATTATA 363967 36 100.0 30 .................................... GAATCTGGCCTGCGCCGGATGGCATGCCGG 364033 36 100.0 30 .................................... GCGTCCTATGTGGCGCCAGCTCATGCCCAG 364099 36 100.0 30 .................................... ACTCCTCGCCCAGCATAGAACCTTCATCAA 364165 36 100.0 30 .................................... GCGGCGGTCACGTCATCCGACACATCTCCC 364231 36 100.0 30 .................................... GTAACGCTGGCGCGTCACCTCGGCCAGATA 364297 36 100.0 30 .................................... AACGAATAGATGGACGGTGCGAGACCTTCG 364363 36 100.0 30 .................................... TCGTTCCTTTCGCAGTATTCACTCCCGTCA 364429 36 100.0 30 .................................... CCAGCCCGACGCATGCCGGGACGGCGGCAG 364495 36 100.0 30 .................................... GCGGACGGTGTGATCGGTCCTGTGACGCTG 364561 36 100.0 30 .................................... AAGAGCTTTCCTGAGGATGCTTTCCTGAAA 364627 36 100.0 30 .................................... GCGCCAGCCGGAATCGGAGCTGCTCCATGC 364693 36 100.0 30 .................................... GTAATCTTCCGCTGTAATTACAACAGAAGC 364759 36 100.0 30 .................................... GAGTGTCAGGTAGTATCGCCTACCGCTATC 364825 36 100.0 30 .................................... CAAGGGTATAGCTGATGCATTGGGTGCTTT 364891 36 100.0 30 .................................... TCCGTCAGTTCACGGGTGCGAGCGTTGACT 364957 36 100.0 30 .................................... ACGGTGTCAGCAGCCAGAACGCTCTGACGC 365023 36 100.0 30 .................................... AAGATCTGACAGGCTGCCGCTCATGGCCGG 365089 36 100.0 30 .................................... GCAGGCGACCCGATGCCGCCTGCGTCATGC 365155 36 100.0 30 .................................... CCGAGATCGAGCATATGCGGGGGGTGTGGG 365221 36 100.0 30 .................................... CGTCATCGCCAAGACCAGACAGTTTAATGC 365287 36 100.0 30 .................................... GCAGCCTCCGCAGAGGGGATGAAATCTATT 365353 36 100.0 30 .................................... GCCCACACCACTGCCCACCGGCTCCACGCT 365419 36 100.0 30 .................................... CGTGCGTCTCATCCGTCCTCAATGTCGATC 365485 36 100.0 30 .................................... CTCTGCTGATGGTGCCGCCTTCTTGGTTTA 365551 36 100.0 30 .................................... CCACGCAAATCTTCACCATTCCACTGAAAG 365617 36 100.0 30 .................................... TCACCCGCTGCTGAAACGTAGTAACGTGTG 365683 36 100.0 30 .................................... AGAACCGGCATTGTCCAGCGCTTGTCCGCA 365749 36 100.0 31 .................................... TTTTTCTCGTGTCGAAGGGCCGCATAAAGGA 365816 36 100.0 30 .................................... GAAAAAAGATTTTTTCTGGTCGCCAGTCTT 365882 36 100.0 30 .................................... GAACCAGAGGACGTGGCGGCCAGATAACTG 365948 36 100.0 30 .................................... ATACGACGTGATGCCCCGCACGGTTTTGAA 366014 36 100.0 30 .................................... AACGCCTACATCAAACAGACAGTAGCGGAG 366080 36 100.0 30 .................................... AACTCCTCCATGGTGGAGTGCGGTGAGCCT 366146 36 100.0 30 .................................... CTGCGGCGTTCGCGGCGGATCACGCCCATT 366212 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Left flank : GTGCAGTCGCCACGGGCAGAGGCCCATTCGATAAGGCGATGCGCATTCATTGTATTCGGAACATGCTGAATGCGATCGAAGTAGATGGCACACTCAAATTCCTGCGCTTGCACTTCGACCAGTTGCAGCAATCGATCCGCTCGTTCCCTGCTGCCATGCCGGGATTCAAGGTAGGCGTTAAACGCCATTCCTTCGTTCTGTGAGGCCGGATTGAGCAGAAAAGGACGCCATGTGTAGTGTGTTTCGATATCAAGACGCTGTTTGAAGACACTGATCAACCGGCGAATGCCCATGCAGCACCACGGACAGACGAAATCGAAAACGATTTCGACGCTCATCCTTGGTCGTGAAGGGGCGAGCATGTTCATGACCGTATACTAGGGACATGATCATGGACATGCACCTTGTTTCGTAGGGTTGGTTACATTTTTGTGTAAAAATGAAGTATAAAATAGATTGAAAAAGCAAGAGTGTTTTTTTGTCTAATTGTTAAGGGAGAA # Right flank : TACCTTCTTGGTAACCGGTTGGTGCTGCATGATTTTTTGTCAGTCTTGTGGTCTGAAATCATAGCAGCACCAACTGTTTTGTGCCGGTCTGTTCTGTTTTTTGTGCGAGTCCGAGCATGATCTCCATTCGTCCATATTGTTTGTCGGTGACCTGAAGCGCTCGAATGCTCCCCTCTTTGGGCAAAGCGGCGCGAACGCGACGAAGATGTTTATCGATACTATCCTGTCCACGTCCTACACGGGCATAGACCGAGTATTGCAGCATCATAAAACCATCATCGCGGAGAAAATTACGAAAGCGGGTAGCCTGCCGTCGCTGGGGTTTTGTTTTCACTGGCAGATCAAAAAAAATCATCAGCCACAAGAATCTGGCCTCCTCTGCTTTCATGCTGTCCTCGCGTCTGATGTTATTCCGATACCGATATTATGTTCGTGGCTTCAGAGAGGGCTGGTGGTCGTAACAGGGCTGCGCTGCTGTGTGTCAGGGACTTCACGGTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1094823-1094367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023410.1 Acetobacter aceti NBRC 14818 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1094822 29 89.7 32 ...........G..G.............C GTAGTCAGATGGCCCCGGATGATTTTCAAGAC 1094761 29 93.1 32 ...........G..G.............. GTCAGCCGGGATGGGCTGGCCGCCTGCCGTTA 1094700 29 93.1 32 ...........G..G.............. CGGTATTGATGGACACACCTTCACCCGTTACA 1094639 29 100.0 32 ............................. GTCACGACTGAATCCCGGCCAATGGACGTGGT 1094578 29 100.0 32 ............................. GAGGCACGACCGTCTTTTGTCAGTTTCAGCGA 1094517 29 100.0 32 ............................. TCGAAGCGATAAAAAATCCGGATGGTGCGCCA 1094456 29 100.0 32 ............................. GGATATTTCCCGTCAGGATCAGTGACGAGCGC 1094395 29 72.4 0 ...........T.G.........ATGGTC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 GTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GACAGGCGCTACGGTCGCTGCTCTGACCATCTATGACATGTGCAAGGCGTTAAGCCATGACATGGTGATTCACAGCGTCGGGCTGCTGGGCAAGGTCGGTGGAAAGCGGGATTTTGGCACTTTGCTGGCGCCGGCTGACGGCCAGAAGACCGCAGGACAACAGTAAAACAGGATTGGACCCGCTCCCTGAGATGCAGAACTGATTGTGATGTCAGCGAAATTCTGAAAACGGTTTTCGGCTACATCCAACGTCCTGCCGATTTCATATGAAAGTTCCGGCGTTGTCACCCGGAAGCCGTGCTGTCGCTGAGATGACTGTAGGTAGGGCGGGGGAGTGCCTGGTCTTCTGATGGAGGATGAAATTCACCAGATGATGATTGCTTTGTGCAGTCCTGAATCCGTATAAATTGTCTCTGAAAAACCGGTCTGAAACGCTGTTTTAAATCGGTAGGATCTTTGACATCAAAAAAGTTGTTTTAAATCAGTGGTTTCCACGAAGA # Right flank : CATTTACGTTAAGGGCGGAAATGTCGCTCCACTGCATTGCTACGTGCGTGAGGAGCAGCATAAAACAGGGTTCAACGCGGGAAAAATCCGAACACGTCAGAATGACTTCTGTTTCGTTGCTGCAATACTATCGATGTAGGATAAAAATGGTGCCCAAGACCGGGATCGAACCAGTGACACTGCGATTTTCAGTCGCATGCTCTACCAACTGAGCTACTTGGGCACCTGGCCAGCGGTTTGACCGGCTGGTGTGGGGGAGCATTTAACCCGCCTTGCCATGAAGATCAAGCCGGGAGGTCGTCTTCTGTGTCAGAAATTTTTCCATCCTCGGAAACGGGTTCTGCCGGAACGCGATAATCCTCGGAAAACCACCGGCCGAGATCAATGTCAGCGCAGCGACGGGAACAGAATGGACGAAACTCCGGCGTCGAAGGTTTCTTGCAGATCGGGCAGGGGCGGGACTCAGCCACGGACAATACTCCATGAAAGAGAGGGAAGAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTAGGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //