Array 1 160317-163619 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZMW01000015.1 Haemophilus parainfluenzae strain CCUG 58848 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 160317 32 100.0 35 ................................ ACCCAGTGAAAGTTGTTTTTTCTTAACAAGCAAGG 160384 32 100.0 35 ................................ TATGTGCAATTATTCTTACCGCAATTTTAGTTTTA 160451 32 100.0 35 ................................ CACGTGCGAAGTTATCCAATCGCACACCACCAAAA 160518 32 100.0 35 ................................ ACTGGTCAGCAACCGATGGTGCAACCATTACCGCT 160585 32 100.0 36 ................................ GCCCACTTCAACTAAAACCATCACCGGATAAGGAAG 160653 32 100.0 36 ................................ ACCGATATTGAAACACAGAGCCCAACGGTAGCGGTA 160721 32 100.0 35 ................................ CAGCGTTTGGAAGAGCACAACAAAAAAGGTGTTGT 160788 32 100.0 34 ................................ GTTTGGCGTAGTAGTGACGGGGCAACTTGGTGGG 160854 32 100.0 36 ................................ TTTTGTCACAAATCACGTTCCGAAACGTTTTTAAAA 160922 32 100.0 34 ................................ TGAAATTGAACCAGTGCGTGCATCTTCAATATTT 160988 32 100.0 34 ................................ TAACGCATTTAACAAGTTATCAGGATTATGATCT 161054 32 100.0 35 ................................ CATCGAACTGTTTGAAAATCACAACTGCTTAGTGG 161121 32 100.0 36 ................................ CAAGAATGGCTGGCTATTTTTGGTTTGATTATTGGT 161189 32 100.0 34 ................................ TCTGCGTAACTACCAGCCCACATTCTGCCTTGCG 161255 32 100.0 35 ................................ TTCCGTGATTAACCTTTGATCGTTAAATGCTTGGA 161322 32 100.0 36 ................................ CCGGCATGGCTTGGTGAGTGGTTTTTTGATGAGTTG 161390 32 100.0 35 ................................ TACATCAGAACCTTTTGTCAGCCAATCGAGCGGTT 161457 32 100.0 35 ................................ TCGCGCTCAAGAAAAAGCACGTCAGTTCTCAGAAC 161524 32 100.0 35 ................................ GCAAAATCTTTCACGCTGCACTGACTAACAACCCA 161591 32 100.0 33 ................................ CGACTAATCTTGAATATGAGGCAAAAGAATTGT 161656 32 100.0 37 ................................ ACTAATATCGAATTGTTGCATAGCTGAAATGGCAAGC 161725 32 100.0 38 ................................ GTTTAGGGTGGGTTTTCCAAGGCCCCATATCACGGTAA 161795 32 100.0 33 ................................ AGCTAAATAACGCTGTTCAGCCTTTTCATAGGC 161860 32 100.0 33 ................................ TGCACAGGCGGCCAAACTACTGGCACGTGCATA 161925 32 100.0 34 ................................ TTTATTAACTTGATATTTATATTTGAGATTATTT 161991 32 100.0 35 ................................ CCAGAATGTGGCTGTTAATGCTGATAGCTGGTATA 162058 32 100.0 35 ................................ TTCTTCTATGACGCAGACGGCTCAAATGCAAATGG 162125 32 100.0 33 ................................ CTGCATATACTCAATAAACCGCACAAATTCCGA 162190 32 100.0 34 ................................ TTCTGCATATTGTTGGGCAAGTGGCCCAACATGT 162256 32 100.0 34 ................................ TCTTTTATTTTTGATGATTTGCGCATTATCTTAT 162322 32 100.0 35 ................................ GCTGATGTTGTCGTGGATTTCCTCACCTAATTTCG 162389 32 100.0 34 ................................ TGGCAGAATACGGTAATACCCTGCAGCAAGGTTG 162455 32 100.0 34 ................................ GCTATTGATAAATGAAAACGCCCCTAAATAAGCA 162521 32 100.0 34 ................................ CTTTGTGTATATAGATAATCAAACATCACTGTAA 162587 32 100.0 35 ................................ GGGTAAATAGAAATTGGGATAGAAAGATACAATAC 162654 32 100.0 34 ................................ ATCAATAATAAATAATGTCTTATCATATCTTGAT 162720 32 100.0 34 ................................ TTAATAGTTTCATACATTACAAGATTCCTTTTTG 162786 32 100.0 33 ................................ ACATTGTGCGATAAAGTGTTCGCCATTGATGTT 162851 32 100.0 35 ................................ AACAGATGGTTTTAAAAAACAAGGCGCGCAAGCAT 162918 32 100.0 34 ................................ AGCTAATCGCCCCTCCATCGTTCGCTCTCTTATT 162984 32 100.0 34 ................................ TTTGAGAGCATCCCACAGAATCTTTGTACGAATT 163050 32 100.0 36 ................................ AAAGCGGTGCCGGAAGCGAAAGAATCATTACCGCCA 163118 32 100.0 35 ................................ TTTCGACTTTAACAAACAAATTTGAAACGGACGAC 163185 32 100.0 34 ................................ TAACTGTTGCCACTTTACTTAATCTCTAAACGTA 163251 32 100.0 34 ................................ ATTAAATCACTCCCCCACGCTAAAGCGTGGCATT 163317 32 100.0 35 ................................ TAACACATAATGCGCCTCGGCTTGCACGTCACGCA 163384 32 100.0 38 ................................ CTGCTTATGTCTGATATATCTTTAACGCTTTACGATGA 163454 32 100.0 36 ................................ CGGCAGTTACACGCGCTTGTTGGTTGGCGACCAATA 163522 32 100.0 34 ................................ AACTGGTGCTATTATACTACAAAATCACAAATAA 163588 32 87.5 0 .............C.......CA........A | ========== ====== ====== ====== ================================ ====================================== ================== 50 32 99.8 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGTGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTTATGTTGAAAAACAAACTGCTGGAAACCTACGACCCCACATGTGACAGCCTGCGTTTTTACCATTTGGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGGCGATGCGGCCGTTATACTTACCAAACTCCTTATCATAAAGTCAGTTAGCGAAATACAGTGTTTAATTAGCTGATTTTTCTTACTTTTTTATGTAGGGA # Right flank : AATAAGCACCGAAGGGAACAACGTTAGTTAATAAGGAAAGAACATGGGCGTTAAACGCATTGTGGCCAATATCAACGTAACCCAACCCGTCGCAGCAAAGGCTTTCTACCATGACTTGCTTGGACTGGAATTGCTGATGGATCATGGTTGGATACAGACCTACGGGCAGGATACAACCATGTCTGTGCAGGTTAGTTTTGCCAGTGAAGGCGGTTCTGGCATGCCTGTGCCTGATTTGTCTATTGAGGTGGACAATCTGGGCGAATTATTGGAACGGATGCAGCATGCTGGTTTCACACCTGAATACGGACCAGTCACTGAGCCCTGGGGCGTGCGCCGTTTTTTTGTGCGTGATCCGTTTGGGCGGCTAGTGAATATTTTGCAGCATGAATAAGTTAACTTAATGCGTGGCTACGCCATACACCCTAGCCGCCTCCGCGCGGCTGTGTGTTGAAACATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //