Array 1 57274-56979 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000003.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 57273 30 100.0 36 .............................. AAATACACCTTTCATTATTACCATCTCCTTATTTCT 57207 30 100.0 34 .............................. ACCAGCAGCGCTCCCACATGGAGGTATACGCACA 57143 30 100.0 36 .............................. CTTCGTGTTTTAAGATAAACAATCGCTCTGGTTTTG 57077 30 100.0 39 .............................. AAAATCGTGTACCGATGGAACCCGTCAACGATGATGAAC 57008 30 90.0 0 ..............C......A.C...... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGTGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAACTCCTACAGCCAACGCGGCTAGACCGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGG # Right flank : TGTCTCCTGCCACAGCTGAACCACCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGGACAAATGCGAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCAGGGAGGGAAAACGTGGCGAAGAAGCGAATTGACCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCCC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 66421-65387 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000003.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 66420 30 100.0 38 .............................. ATTCTCAGACAGCTATATAGCACCACGGGTTAGTTATT 66352 30 100.0 35 .............................. CCTGGCGACACAGTTCCACGATCTGCTGTTCCACC 66287 30 100.0 36 .............................. ATCACTGCAAGCACGCCATTTTTCAAGGCCGTGAAA 66221 30 100.0 39 .............................. AAAAGAAGCCCTCACAGGGCAGTCGGATCATATTCGCGA 66152 30 100.0 38 .............................. AATAGTGATGCGAGCAATTGTAAATCAATTCCGCACGG 66084 30 100.0 38 .............................. GTTGCGGGAACGGCACAATCGCATATGAAGCAATTGAG 66016 30 100.0 38 .............................. ATGAGTGTAGTAATCAATGTATCATCATCGCTAAAATC 65948 30 100.0 39 .............................. TCCCAGAAGAGCTTTAACCCAACAGCACAAACTATTGAG 65879 30 100.0 37 .............................. TTCAAATTCATTTATTTTCATTGTCATCCCTCATATC 65812 30 100.0 35 .............................. TAAAATTCAATCCCAATCCTAAACGAACCGGCCGG 65747 30 100.0 35 .............................. AGTACGGCCTGCCCGATTTTATCTAAAGCATCCTC 65682 30 100.0 40 .............................. TCTAAATCGTCAAGCATACGTTGCAAATCCGGTCTTTCGA 65612 30 100.0 35 .............................. TCCATCTAAATCCTCTCCTTTTGTTTCACGTTATC 65547 30 100.0 36 .............................. TGATGTCGCCGACATAGGCGCAAGCATCACCGATAA 65481 30 100.0 35 .............................. CATAAGTAGTTAAATAAAACCCATAGCCGGCTTTT 65416 30 80.0 0 ...............GC.T....C.A..G. | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 98.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGGAGAAAAACAAAAACTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTCTTTGGG # Right flank : ACTATACAGTACAGCACAACTTTTTCTGTTCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAACACATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGCGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAGACGGGCTGATCATTGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7426-7727 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000034.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 7426 30 100.0 39 .............................. TTTCTCTTGTAACGCTTTGACGTATTCAAGCAGTTCCTC 7495 30 100.0 39 .............................. TTTCTCTTGTAACGCTTTGACGTATTCAAGCAGTTCCTC 7564 30 100.0 40 .............................. TATATTGTGATTAAAACACAATGATAACCGGTTTGTTCGT 7634 30 100.0 35 .............................. CTGGATGCTGAGACCTGCTTTTAATTGGGCTTTGA 7699 29 86.7 0 ...................-...GC....A | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 97.3 38 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : ATCGCCCCGGGGACCCGGACCAAAAGGAAACGGAAGCGCCGGCGAACGTGGACTTGATTCGATCGATCTCGTTTTTGTCACGATTTGTCGAAATATGTATTTTATATTTTTGTCAGACATTAAATGTTTTAATATTTCTCATAATATGGGCTGGTAAAAATAAAAAAATAGGCACTTTGCTAAAAAATGACCGCTCAAATTCGCCTGTATCGCGTTTTAATCGATAAGGTAATGGTTTTCTATTCAAGAAAGAAAAAATGTTTGTACGGACCGTTTTTCGAGTTTAACGCGGTTTTCATGTTTTTATGAAAAACAACTGCTTCAATCCTTTCTGTCGTCGACTTCCAATCGTGCAAAAACTCCGGGGGATCGACGACAGTTTCTTTTTTTCTTTCCTTCCTACAGCCATCAGCGATTCACTCTATTGACGGAATTTTCGAAATGGAGTATACTGGACTTGCCCTGTTTTGAAAAGTGTTGATGTATCAACGCTTTTTGGG # Right flank : AATAAGACTAACGCGAAAACCCGCTGATTTTTTCAGCGGGTTTTGTCATCGGCTCAACACCTTGCGATCAGGCGTTTTTCCTTTTGATTGGGTTTTTTTTCTTTCCTTCCCGCAGCGATGCGATGAGTTGCTGCCTGAAGTTGCTTCGCATGGTTGCGGGATGAGTCCGCTTGCACGATGCTTCTTTGAATGGACCGAGCGCCGGGCTTCCCCAGGCTCCGGCCGGATGGCCAAAGGCCAGAAGGCGGCCAGCCGGGAAGACCGGCGCGGGCTGGACTTAGTCTTTGTATTTCTTTAACCGCTCCTCAAGCTCACGCCGCATCTGTTCGATATCTTCATCAACCTCTTTGCTTTTGGCGCTTTCGGCAACAAGCTGCTCTTCGTAGCCCCGGAGCCAGTCCGGCACGATCTCGCGGCGGACGAATCTAGCGCCTCCATGGCTGTGAATGGTCACCTCATTTGGGTCGATTCCAGCCTGAATCCGCTGCACTTTTTCATTC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 17819-17656 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000034.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17818 30 100.0 37 .............................. GTCAAGTACTGTGTATTGCATTTTTTGGACTGAATTG 17751 30 100.0 36 .............................. GTTTATAGTTGAGATAGAATTCGTTCGTTTGGGATA 17685 30 83.3 0 TG....TAT..................... | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 94.4 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : ATTTATGTCTTAATGAAAAAAGAAACGTATGACAATATCGAACAGAAACCAAATTTGCAAGAACATATCGATAGCGGAATATTGAAATGCGAAATTGTCCAAATACCTAATCCAAATAATCCAGCAAAAAATATAGATGCTATCTTATTTACCGCAATTTTGTAAAGAAGCTCCATTATATCTTTCTTTATTCTGAATCAATTTGCTAAACCGTTGCTTAAAAGTGGCATGGTCATGCTGCTATAAATTCATACAGTCTTGCCAGTGTGATGAACAAATTATTCCTGCTTTCAGTTGGCAAGGAATAAATAAGAAAATGTTTTGGTTCTTTCTGTCGTCGACCTCCAACCCTGCAAAAACCCCGAGGGATCGACGACAGTTTCTTTTTCCCTTTCCTTTCTACAGCCATCGGCGATTCACTCTATTGACAGAATTTTTGGAATAGAGTATACTGGACTTGCCCTGTTTTGAAAAGTGTTGATGTATCAACGCTTTTTGGG # Right flank : TGATCGAGAAAACGACTATTTATATACATGCTCATTGAAAAGTTAACCTTCGCATAAGCGGTGCCCACTCTGGTTATACTGCTCCTAATGAAAAACATGGAAAAGGAGCGGAATTCTGCATGAAACGCCTCAAAATCACCGACAACCATGGATGGACGCCCCGGAAACTCCGCAAGCAGGAACGGAAGATCAAAAACGCTCATCTCCGCCAACGTGTGATGGCCGTCCGCCTGGTCATGGAAGGCTATTTGGGCAAAGAGGCGGCTTCCATGGTCAACGTGTGCCGACAAACCGTTTCCCATTATGTGTCGCTGTTCAACGAAGGCGGCCTTGAACTCCTGCTTCATCGGGATTTCGCCCCCGGGCGAGAGCCGTTTCTCACGGAAGAACAGCAAGAAAAGATCAAACAGCTTGTATTGACCACCACTCCCGCGGAACTGGGCTGGGACGTCGCTTCGGCGTGGAACACCAAACTCCTGCAATCCTATGTCGCAAAGCAA # Questionable array : NO Score: 8.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 22948-22112 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000034.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 22947 30 100.0 39 .............................. AGCGCTTGGCGGGCGCTTTCTTGGCGCTCGTGTACGGGC 22878 30 100.0 36 .............................. AAAAATCTGGAGAAGTATAACGACTGTTTCGCTCGG 22812 30 100.0 37 .............................. TTGCTCTGCTTTGGCTTGCTCCGCTTGCTCTGCTTTG 22745 30 100.0 37 .............................. TGTATTCGTACATGAGGGCGCGGGTATTGCCGCGTGT 22678 30 100.0 38 .............................. AAAGCGGACTGATCGCCGACATGGGTGCCGAGCGCTGG 22610 30 100.0 40 .............................. AATACATCAAACCAACATTCTTCTGTCAAATAATACAAAG 22540 30 100.0 37 .............................. CTCATTTTCTCGGTGCTTTTTGATAGTTGCGCAATGA 22473 30 100.0 35 .............................. AGATAATACACGTCCTCGCCGATGCGTTTTGTGTG 22408 30 100.0 38 .............................. CTGTAAAGAATACTTTTGTTTTTGATGTCACTTCCCGA 22340 30 100.0 37 .............................. ATTGATTCGACATCCAGCACTAGTACAACACAAGCCC 22273 30 100.0 35 .............................. GCGAAATTAAGTCCATTGTTTACATAAATTTGGAT 22208 30 100.0 38 .............................. AGTTCAGCTTTGTTCATTTTTGAGCGACCACGAATACC 22140 29 86.7 0 ......................GC.-...G | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 99.0 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : CGAACGCAGACTTTGTTCCATCGATCTCTGTTTTTTTGTCATGATTTGTCGAAATATGTATTTTGTATTTTTATCAGACAATAAATACTTTAACATTCCTCATATACGGATCGGTAAAAATAAAAAATAGGCACTTTGCTAAAAAATGACCGCTAAAATTCGCCTGTAACGCGTTTTAATCGATAAGGCAATGGGTTTTCTATTCGAAAAGAGAAAAACAAAAACGCCTTTACGGACCGTTTTTTCGCGTTTAACGCGGTAGTGATGTTTTTCTTTGTACGGCGACACGAGGAACGTCCGTCGACAAGAACTTCCCATGCTGCGATCGTTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAGTTTCTTTTTTTCTTTCCTTCCTACAGCCATCAGCGATTCACTCTATTGACGGAATTTTCGAAATGGAGTATACTGGACTTGCCCTGTTTTGAAAAGTGTTGATTTATCAACGATTTTTGGGG # Right flank : ATAAGACTAACGCGAAAACCCACTGATTTTTTTTCAGCGGGTTTTATCATCGACTCAACGCCTGACGATCAGGTGTTTTTTCTTTTTAATTAAGCTTTTTTCTCTCCACCCGCAGCGATGCGATGAGTGGCTGCCTCGAGCTGCTTCGCATGGCTGCGGAATGAGTCCGCTTGCACAACAGCTTCCTTGAACGAACCGAGCGCCGGGCTTCGGAGGCTCCAGCCGGACTGCCACAGGCAGGGAGGCTGCCGGCCGGGAAGACCGGCGCGGGCATCAAAGTTCTAAACAATGAAGTAATGTCCAGGCAAGGTCAATATATAAAAAAGCGATCTGCTATAATTAATGTATAATTTCCTCATCTATAATATAAATTCCACATTGAGGTGGTCTGTTTGAGCGATAAACTTAAAAAAGAACAGCGGTCGAAGATCATGAGAGCGATAAAATCGCAGTCACAGCTAGAAAATAAAGTTACTAAGTCACTCTGGAACGATGGATAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 62960-63587 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000008.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 62960 30 100.0 36 .............................. AAAAGAATGAAGAAAGGTGTTTTCATCGTATTCTTT 63026 30 100.0 36 .............................. TCGATCGAGTTTTTTATTTTATAATGTCTTGTTATC 63092 30 100.0 35 .............................. AATGCTCGATACCAGCAAGACCGATCACTTAAATA 63157 30 100.0 40 .............................. AAATCACGGCGCGCTAGCTGTAAATGAACACTTCGGGCAG 63227 30 100.0 36 .............................. TAAGCGAACATAAAAAATATAATAATAAATACATAA 63293 30 100.0 38 .............................. ATTTTTGATTCTAGTATTTCAGAGACGATGGAAGCAAT 63361 30 100.0 36 .............................. ATTTCTTCGCCGCGTTCCCAAAGGATTCGATAATAT 63427 30 100.0 37 .............................. TCAGCAGCCTCATTTTCATATCGGGGAACTGGATCAA 63494 30 100.0 35 .............................. CGAAAAAAGGCAGTTTTCTGCCGTATAACAACAGC 63559 29 86.7 0 ................CA.....-...G.. | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 98.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCTATCTGAAGAGGAGGAAGCAAAACCGCGACACGAGGTGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACTCCAACAAGGAATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGGTACGATGTCGACACGATTCACGAACTGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTAAGACGGCCCTTCGCCGTCAAGCTCCGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCTGGGGATCGACGACAATGTTCTTTTGCGCCAAAATCCTACAGCCAACACGGCTGAACGATATTGACAGAATATTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATTGTGTGG # Right flank : CCTGTGCCGGTGTACCAAAATATTTGTGTTACCCGTGGTGCTAGTTGAGCGTTAGAACTCAACTAGCCCAAGTGTAACTAGGGAATAGGCTAACAATATGCCGTCGAGCGCTACTTCAAATCCGATCATGGAATTTGCTCGAATCCCTGTGATCCGGTATTGGTCAACCAGAACCGAGAACACCGTCTCGATCACTTTGCGTTTTTGTTGGATCCATTTCTCCCATGCCTCGGACGAGCAATGTTTCTGGTTTTTTCGAGACGGAGTCCAAAGCGCCATTTGGTACTCTTCGTACAGCCTTTTTTGCAACTCACGGCTGATGAATCCTTTGTCCCCAAAGTTATAGGGATGAGGAATTTGAGTCATCACGCTTTCAGCGGCGATACGATCATGGCAGGATGCTTCCGTTACCACATAGCCCATGGGCAACCCTTGATCGGTCACTTGAAGGTGCAGCTTCAACCCATAGTACCATTGCTTTTTGGAAGCGCAATACCCGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 65490-65848 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000008.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 65490 30 100.0 37 .............................. ATCCATTAAATAGTTGTATAAATCGATAGGACCTTCA 65557 30 100.0 38 .............................. TATTCCCATCCGTAGATTTTCTCCATCCCAATGAATAT 65625 30 100.0 36 .............................. TTTCTCCTGTTTCGTAACGCCTAATCGTCTTTTTGG 65691 30 100.0 35 .............................. CGAAGATCAGAGAATTGCGGATTTTTCCCGTTTAA 65756 30 100.0 33 .............................. TTTTTGCTTGCGGCGGTCAAGCCAATCTATGAT 65819 30 76.7 0 ............T.C.CA...A.C....C. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 96.1 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAACGTTCGATGGAAGAAAGAAAACGCAATTTTTTGATCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCATACTACGGTGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGATTCACGTTCATCATCGTTATCGTGTGGTGACGATGTTCAAGAATATATATATTACAGGATGGCTTGGCTATTACCGCCTCTGTTCTTCGCCAGAACAGTTGACATTTTTATATCATGTTGGTCTAGGCGGCCGAAATTCACAAGGATTTGGCATGTTTCGCCTCAAAAGTGGATAAACGAGTCACGGGATTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGGTTTTTGGTGGTTCAGACTTACAGCCATCGAGGTTGAAGGTTATTGACAGAATTTTTGAAATGTGGTATTCTGAAAACAGCGCTAGATCGAAATGCTTGATGCAACAAGCATTTTTGGGG # Right flank : CCTCTTCATCTTCGCGCGCAGGTGTGATGGGGGGCTCGTTGTTGTCGCAGAGTTAGTTCAGACCACATCTCTCATTTGCTTCGTTTGCGGTGATGAAGCATTGTGCGTAACGGATGGGCGCCTGCGGAACAGGCAGTACAGCATTCTAAGTTGGGCAAAGGCATTTCTAGTCTCACGGGTTGCCTTTCTAAGTGACGGGAGAAAAAAATAAGATGGCAGCGATCTATGTTGGCGGCATCTTTCGATCGAGGGAATCCCTTCTGAGCAGGGGATTCTTTTTTTGTGTTTCGTCCTCCGACGTTGTTTTGCGTCGCTCCTTAAAAGGGGGAAGCAACGGAAAAACCAGCTGGAAGAGACGCTCTTTTACTTTCGAGGGCCCTTGTTATTTTCCATTCGCCTTCGTGAAGTTGGGTGGAAAATTCGTTTTTCACCCGTCTCTTCAGTGGGAAAATGTTTGAAATTGTTAAAAATATCCTCCTCTATAATTGAAAAATAGGATA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 75278-75778 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDKL01000008.1 Geobacillus sp. PK12 NG-9085_PK12_lib178019_5312_2_1_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 75278 30 100.0 39 .............................. CTTGGGTATATCCGTTAAGGCTTATAGCATGAAAGAACG 75347 30 100.0 38 .............................. TACAACACGTTTAATATTTTATGGTATTTTTCATGAGC 75415 30 100.0 36 .............................. AATAATTCTTGTAATACGTAGATCTACTCGATTGGC 75481 30 100.0 36 .............................. GAAGCGGTGAAATGGTTATTGCGATATGGAGCAGAC 75547 30 100.0 36 .............................. CCCGCGTCGTCCACAATTTTCACCACATGTGGTGTC 75613 30 100.0 37 .............................. AAAATTTCCGCTATCCTTTCTTTAAGGAATAGCGCTT 75680 30 100.0 39 .............................. ACCTGATAATCGTTAGTTGACGGGTTCATCGCTGCCATC 75749 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 99.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AACGCGCCCGTCTTGAGCGTCGAAAAATCGAGCAGGATATGTTGGAGCGAAAGAGACGCGAGGAAGAAGAACGAGCAAGGCTGGCTCTTCTCTCCCCCGAAGAACGGTTGGTGGCCGAAATTGAACGGTTGACTGACAGCGAAACGGATAGGCAGCGAAGCAAGGATAGCCTTTACCAACAAGTGATCGAGCAGCAAAACAAACAAGCCGCCGTTGCGTTGCAGGCGTATTGGAAACGCATCGGAGAATGGGGAAAAGCCGTCAGCAAAAAGCAAAAGCAAAAAATGGACAAACTTCAACAACTGTTGGAGGAAAAGTGAGGGTCTTGCGATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTGCGCCAAAAATCCTACAGCCATCACGGCCGAACTGTATTGACAGAATTTTTGAAACGTGATATTCTGGAAACAACCCAAAGGGAAAAAGCTTGATTTGATGCGCATGGTTTGG # Right flank : CTTATCCAACTCCCCGTCTTCCACACATATCTGAATCGCGTTTTCACCCACGCAATTTGGTGATCTTTTCTCCTCTTGTGCTGTCTTCGCTGGCAATGTGGAGATGACCCACCATCTTCCCTTGATCCTCGCCACGCGCAAAACTTCTTCTTCGTTCTGTTTTTCTCGCGGCAGCTTTGTTCGATGCGCTATACTTGGATAGAAGGAGCAACATTTGTTTGCTTCCGGATGGGCGTTTGTTTTTGCTTTTTCACGATGGGGGCAAGCAAAGGAAAGAAAGGGGAACGGTTATGCGCTGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAATCACCGATGTGCCCGGGGTAAGGGTGGGGCATGTGACGATTCGCGAGGACATCGATGAACGGACGGTGATCCGCACCGGGGTGACGGCGGTGCTGCCGCATGGGGGCAACTGGTTTTTGGAGAAAGTGCCTGCGGCTTGTTTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //