Array 1 2543-1963 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000026.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2542 29 100.0 32 ............................. CTAAATATGAACGAATTGCGAGAGAAGAAGTT 2481 29 100.0 32 ............................. TCGTTGTTAATGCCGTCCCGAATACGTTGCTC 2420 29 100.0 32 ............................. CCTCGCTTACGGAAATATGGAGCAAGACGAGT 2359 29 100.0 32 ............................. CCAAATAGGAGGGCGCTATGATTAATAAATGG 2298 29 100.0 32 ............................. AACTATCCGCTAAACGGGAAGCGGTAAAAGCC 2237 29 100.0 32 ............................. GATCGGAGCCGCCATACGATTATCTGAAAAAC 2176 29 100.0 32 ............................. CAAATGAGTACGAGAATATTTTTGAAAATAAA 2115 29 100.0 32 ............................. TTAAAGATTGATGCCATCTGTATTTCCATTCA 2054 29 100.0 32 ............................. GGCTTGCTGTCTAATGAATGTTGATTTATCTG 1993 29 89.7 0 C..........................TC | A,A [1968,1972] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : ATTTATAGTATTGTTTTAAGCATAAACGATAATGGGAACAGAGTATAAACCATTTTAACGCAACGTTAACCTTTTTAATCAATACTTTTGCTTAATATCAATAATATCTGTTAACTAAACGAGTATCTGGTAGCTGCTTAACGCCTTTATTTAAAAAGCGATTTAAGCAACGCCATACTTTATTAAGTACATTTTTTAACCTGTTAAATGAAAAATAATTTTATGCTGAAGCGGTATAGATTTCTGGATATGTTAACTAGAAATTCCGTCTTTTTTAATAAAGAAAAGCTCAGTTTTATTGCTGACTGTGCTATAACTATATGAAATTTAAAGATTAATTGGTGGAATGAAAAATCCTAATATTCCCTCTATTTTATTCTAATATTACTTTAATAAAAACAATGCATTATAAAATCATTGTTATTATTAAAATCATTGAAAAAGTTGGTAGAAATTTGGTGTTAAATATTTTAATAATAAAACAATGTGTTATAATTGGA # Right flank : TCAAACTAGAATGGCTCATAGCGATGAAAAATCAACTAAATTTTATACCAAAAACCATACCGAATGGGTTGAAGTTCCGCACATCCAAATCGTAATTTAAGCGGGGGTAAAACTCGTTTAAGTTATTGATATCTATAACACTCCCTAAACCCCTGTTTTTTCTTACAGTTAAAAGCAAATAATTAATTGAATTATATCATTATTTTTAGTGTTAGAACCTAATTTTAACATAGTGGGGGGGCAGTGGTTAGAGTCCACCTAGGCGTACCATTCTAAAGCCTTACCTAAAAAGCCTTTAAAGTGATTACCTTAAATCTATCTTTTATTAGTGAGATAAAATGAGGGTAAAAATGATATCATCGAATAGCTCTTTAAATGCTAACAACTTCAAAATAAACAAATTTTTCGCAAAAAAAACCTCAATAAAATCAATACTTTTCCTGACCGATTTTTTTGCTTAAAATTTGAGTTTTATTTTGGTGGAAGGAATGTTGCTTATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70090-70713 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000012.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70090 28 100.0 32 ............................ TCGTCGGTGCTCGTCCTGTTTCTTGTTTGCTC 70150 28 100.0 32 ............................ ATGATCGCTCCGCGTAGCATCATCGAAAATCT 70210 28 100.0 29 ............................ GTTGCTCACAAAATAAACGATGAATACAA 70267 28 100.0 32 ............................ GCTGCCATTTGAGCTCTCGCATAGTGTAAACG 70327 28 100.0 32 ............................ AAATTCCACGGTTTAGCCTTTTGTTTACAGCA 70387 28 100.0 32 ............................ CATGACTGGGTTTATACAGATATAGAATATCA 70447 28 100.0 32 ............................ GATTAGTTATAATGGATTAGCTCACGCAATAT 70507 28 100.0 32 ............................ AGCTCAACCGGCACCCAAATTACGCTGGAAAC 70567 28 100.0 32 ............................ AAAGCGAACAGGACAATATATTGCATGTGGCT 70627 28 100.0 32 ............................ TGATACCCGAAAAAAAATTCCTGATACCCGAT 70687 27 85.7 0 ............A..........-T..T | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : GTGCTATATCATAGCTGATTTGTTATTAATTTTCTATCTATGAGCTTTGATTTGCTTTATTAAGGTTGATAAATCCAACCTTAATCATTTCTCTGACTTTCATGTATCCCAATTTGAGCTGGTCGCGCTTCTTCATTCTATTGTTAGTTGAAAGTTGTTGATGAACATCATTCAATATCTTTTAAGAAAGATATTGAAGAATTTAATTGATATAGGCTATTTTTCTATTGATAGGTAGATAAAATCAGAATCCGAAAACGCTTAACGCTATTTTTAAGGCTTTTATTAAAAAACTAAGCAAATTGATCTTTTGGTTTTTAGGTTTGGGTAGTACTAAGTCATGACACAGTCAAAAAACTAAAAAACAGAACCCTTTTTTTTGCCATATTTTAAAAATAAATAAAATCAAATAATTAAAAACTCACCGCAAAAAAGGGTTTTTAAAACCTAAATAGCTATTTGCCTTTTTACATACAATATTGATAGTATATTAGCTTCTA # Right flank : TTCATCACGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAGCCTAAAACGTAACAGTTGTGTAAATATTTCATAATGAGCATACAACTTAATAAATAATTACGCCGCTTGTTTTTGTGTTGTATATGCAATGGAAATCATGTTAGTTGATGTTTCATGAGGTCTTTTGGGGGTAGATAGCAACGGGTCATAATACGTTTAGCCAAATCAATGACGGCTATTTTTTTATATCATCGCCATAACACTTGTTGATGATATGGCGTTGTTTTTTTATATATTTATTAGAGTCATTTTTTTACTACTGTAACCGAAGCAAGTAATTTCTAACCATTATATTAATAGGGTATTTTTAATATCTTCGATCGTTTTTGTGCCAGCTAATTGCATGGTAATAGACAGTTCTTTGTTAAGATGATCAAAGACGGATTTTACTCCCTCAGCTCCACCTAAATTTAGACCATAAAGAATAGGGCGTCCAATAGCAACAAGATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22824-22436 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000004.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22823 28 100.0 32 ............................ ACCTCGTTTGTCAAATGCAACCGCGTAATAAT 22763 28 100.0 32 ............................ AACCCATTGATGAAATTTCAAACGCATTATTT 22703 28 100.0 32 ............................ GTGCATGTTATGACCACAGCGTACAGTAAATC 22643 28 100.0 32 ............................ AACACCTACAAGCACTATCTAAACCAGTTAAG 22583 28 100.0 32 ............................ TCTAGCTCTTGCGTATGTAAAGACCATGCCAA 22523 28 100.0 32 ............................ AGTAACGCTCGACCGAGCACTTTTCGCCACGT 22463 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCAATTAGCGATTATGCTTTATTGATGCCTATCACTACAGTACCGACGACGATAAAAGGCTATTTACGTTTTAGCCGTGTTAATCCGAAAGGTCAGAGTGCGTTAAGGCGTGCCGAAAAACGATTAACAGCACAAGGTAAATGGACGTCTGAAGTAAAAAATAAAATGATTGAAAAGTGGGGAAGCGTTCATTTGCAATATCCACACTTTCATTTGAATAGTAAAAGTACAGGGCAAAAATTTATTTTGTGGATAAAGCAAGAAAAATGCCTAGAGCCAGTACAAGGCACATTTAATAGTTATGGGCTAAGCCAAACCGCAACAGTTCCCGATTTTTAAATTTCTAACCCTTTTTTTGAGGGTGTTTTTAACATATTGATTATTATTGATATTAAAATAGACGCAAAAAAAGGGTAAAAATTGGGTAAAGTGCAATATGCTCTTTTACAATAAGGAACTATTGAGATAAAATTCTA # Right flank : CTGTTCAGATTTAAATGACATCATTGTTGTAACTTCAATAATCATTAAGTGCCACAATATAGCCCTATCAATGTGGTTTAACCGTATTATAAAAGTGAATAAATTGCTTAAACTTTTGTTTTATTTTTTGAATATTTGTTGATTATGCTAGATTTCAATTAAAGTGTGTATCGCTCTTTTCGGCTTTTTTAATCTTGAAACGGTATAGAATCTTGAATATTTTTTACAAAAATATAACCTAAAAAGTAAACAGTTCAACTTTAACTAAACGTTTAATTCCATAACGGATGGCCTTATCATATTTGCACTGGTTAAGGGGATGGGCAGCTTTAATCGGGCTTTCTTTAGCACGTTATCAATGGTCGAGCAACTGACCATAAAACGTTTTGCTAAATCAGTGACGGTTAGTTTTGTTTATGATATCAGTGCCATATCTCTTGTCTGTGATATGGCGTTAATTCGCTTTTTTATGGATATTTATTATCGTAGTGTCTTAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 171-628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000036.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171 29 100.0 32 ............................. CTAAAATGATTTGCGTTGATGTATCAACTATA 232 29 100.0 32 ............................. TCACTTGTTGCTTGAATCCCTGCATCTAATCC 293 29 100.0 33 ............................. GGTCTTTCATTCACGCAAACTAAACATGGTTTT 355 29 100.0 32 ............................. TTTGTATTTGTATATTACACCATCAGGTACTA 416 29 100.0 33 ............................. GGGACAGGCATAAACTACGAAATGATTCGCAGA 478 29 100.0 32 ............................. ATCAGATAAGCATGATTCGCAGAAATTCAGAA 539 29 100.0 32 ............................. CAACAGGACGCGTCATTGATATTGTAGGTAGA 600 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : AAAATTAGTTGGTAAAATAAAAAACGTCCAAAATTCTATTTGTGATTCTTAGTATTAATTTAATAAAAACAACCTATTATAAATTAACTCTTATTTTAAAAATAAGCTAAAAAGTTGGTGGAAATTTGGTTGCCAATATTTTCTTTATAAAACATTATGTTATAATTGGTG # Right flank : GATAGCCACATTGTTCACTTTCTTTTATAATATTGTTCTATTTTTATCTATGGTTGGCTTAAAAAGAGTAATTGGCATGAAAATTTTAGCTGGTTCTTCTGCTTTGTCTGCATTTCGTATTAGTAAAATCCTATCTGTTTGTCGTGAAAAATCGATTCCTGTGATTAACCTGGATGCACAATATATTCATTTTGTTGATTTGACTGATAAATTGACGGATGAACAACGGTTAACGCTCGATAAATTATTGCAATATGGTCCTAAAACTGCACAAATAAATGTCATAGATAAATCCAGTAAACTACTCTTTTTAGTCACGCCTCGGGCTGGAACGATTTCACCATGGTCATCAAAGGCAACCGATATTGCGCATAATTGTGGATTAACACAGATTCGTCGCATTGAACGCGGTATTGCGTATTATGTCGAAACTCGTTCGCCTTTGACTCAAGTGCAGCAAGTCGCTTTTGAAGCGTTGATTCATGATCGCATGATGGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5685-6570 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000040.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5685 29 100.0 32 ............................. CGTTAATAGCTATCTATTTTACCTGTCGGTCA 5746 29 100.0 32 ............................. CAGGTCAATAAATATCTAACAGCGACTTAAAA 5807 29 100.0 32 ............................. CTCATTTTGTCGCACCTTTAATAACTCTTATA 5868 29 100.0 32 ............................. ATGTACGAGAAATAACATCAACTATTCATGAC 5929 29 100.0 32 ............................. TATTGGCTCATCTGAACGTGCTGTAGCAGATA 5990 29 100.0 32 ............................. CAATAGTGATAATAATGTATTAATTTTTTTCA 6051 29 100.0 32 ............................. TTTGTATTCGTTGAATTAATTCAAACTCACCG 6112 29 100.0 33 ............................. CACGGATGCTTTAATTCTGGGTTTTGGTCGGGT 6174 29 100.0 33 ............................. TAAATTCCTGAGGTTTGAGTTTGTACCTAAAAA 6236 29 100.0 32 ............................. GTGGTTGTTGATAGTGGAAAATGTGAATATGT 6297 29 96.6 31 ............................T TCGTTTAAAACCGATGATACAACAAGAGGAA 6357 29 96.6 32 ...........................C. AAATCAGCTTCTATTCGTTTTGCTTTATCATC 6418 29 96.6 32 ...........................C. ACGCACGGAGGGCTATACCTCTACCCATCTGT 6479 29 96.6 32 ...........................C. GGCTTGCTGTCTAATGAATGTTGATTTATCTG 6540 29 89.7 0 C..........................TC | A,A [6558,6561] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.4 32 GTGTTCCCTATACACATAGGGATAAACGG # Left flank : ATTTATAGTATTGTTTTAAGCATAAACGATAATGGAAACAGAGTATAAACCATTTTAACGCAACGTTAACCTTTTTAATCAATACTTTTGCTTAATATCAATAATATCTGTTAACTAAACGAGTATCTGGTAGCTGCTTAACGCCTTTATTTAAAAAGCGATTTAAGCAACGCTATACTTTATTAAGTACATTTTTTAACCTGTTAAATGAAAAATAATTTTATGCTGAAGCGGTATAGATTTCTGGATATGTTAACTAGAAATTCCGTCTTTTTTAATAAAGAAAAGCTCAGTTTTATTGCTGACTGTGCTATAACTATATGAAATTTAAAGATTAATTGGTAGAATGAAAAATCCTAATATTCCCTCTATTTTATTCTAATATTACTTTAATAAAAACAATGCATTATAAAATCATTGTTATTATTAAAATCATTGAAAAAGTTGGTGGAAATTTGGTGTTAAATATTTTAATAATAAAACAATGTGTTATAATTGGA # Right flank : CTCAAGCTAGAATGGCTCATAGCGATGAAAAATCAACTAAATTTTATACCAAAAACCATACCGAATGGGTTGAAGTTCCGCACATCCAAATCGTAATTTAAGCGGGGGTAAAACTCGTTTAAGTTATTGATATCTATAACACTCCCTAAACCCCTGTTTTTTCTTACAGTTAAAAGCAAATAATTAATTGAATTATATCATTATTTTTAGTGTTAGAACCTAATTTTAACATAGTGGGCGGTCAGTGGTTAGAGTCCACCTAAGCGTACCATTCTAAAGCCTTACCTAAAAAGCCTTTAAAGTGATTACCTTAAATCTAGCTTTTATTAGTGAGATAAAATGAGGGTAAAAATGATATCATCGAATAGCTCTTTAAATGCTAACAACTTCAAAATAAACAAATTTTTTGCAAAAAAACCTCAATAAAATCAATACTTTTCCTGACCGATTTTTTGCTTAAAATTTGAGTTTTATTTTGGTGGAAGGAGTTTGATTATTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACGG # Alternate repeat : GTGTTCCCTATACACATAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9768-9617 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000072.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9767 29 100.0 32 ............................. TGTAAAATAAGTTATATTATTCCATTGTAAAT 9706 29 100.0 32 ............................. GGCGTACATTTGTTCGCCCTGATTTAGTTTGT 9645 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCTGTACCCACAGGGATAAACCG # Left flank : TTGATTGAAGATGTCTTATCAGCCGGAGGAATTGAACCGCCATTACCACCTGACGATGTTCAGCCTCCAGCTATTCCTGAACCTAAATCGCTTGCCGATACTGGCTTTAGGAGTCACTAATTATGAGTATGTGTGTGGTTGTGACCGAAAATGTACCGCCCAGATTAAGAGGTCGTTTAGCCATTTGGTTGCTAGAAGTTAGAGCGGGAGTTTATATTGGTGATATATCCAGACCAATTAGAGAAATGATATGGCAGCAGATAATTGAATTAGCAGAAGAAGGCAATGTCGTACTTGCTTGGGCAACGAATACCGAATCCGGATTTGACTTCCAAACCTATGGTACCAACAGAAGAGTTCCGGTAGAATTGGATGGGCTACGGTTAGTTTCTTTTTTACCTATTAAAAATTAATAAGTTAGAGTTCTTTAAAAATTAAAAAAATCTGGTAGAATTTACCAGTCGATATAACTCTAAATAAAACAAATAGCTATGTTTAGA # Right flank : TCGAACAAATTAAAATGAAAGTGATAAACGAATCTTTTACCTATATGTAAGTCATTAGGTCATTAAATATATATTTTATTTGTCCGTCATATTTTTACTGATACATAATAGATTAATTGATACTAAATATAAAAAATTAAATAAAATCAATGGTATTTCTGACATTTTTTATTAATTATTCTATTGTTTCATTAAACATTTAAAATGAGGTAGTCATTATCTTAATTGTTTTTTAATAAAGTCTTTATATGAAAACAACGTATAATCAATTAATTAAAACCCTAAAGGCATTTTTTTATTTATTGTAATGTGAAACTGAAAGAAAGCATTAATAATGCTGGCTAAAATAATTGGCAAAAATAGCGTACAATAGTGCAATATTTAACACAGGTTTATCATAAATAGTTTAGGAATTTAGTATGGCAGGCAAATTTATTGTCATCGAAGGGCTTGAAGGGGCAGGCAAAACAACGGCTATTAATACCGTTGCTCGCATTTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACCCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16916-17184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000039.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16916 28 100.0 32 ............................ AGTTTGATGCGCTCAATCTCTCAATGATATCT 16976 28 100.0 32 ............................ TTAGCAAACAGCTCAGCTCTAACAGATTCTAT 17036 28 100.0 32 ............................ ATTCTAGAAGGTAAAATGGTTATACGTCAAAT 17096 28 96.4 32 ..................A......... TAGCTCCCTCTAAGCTGATGAAAGAATAACGC 17156 27 92.9 0 ...............C........-... | AA [17177] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 CTTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : CCCAAGATGCGATTTTTGGACTACCGGCAGAATCAACCGATGATTGCAAAATTTTCCATGCCGGTACTAGTTTAGAAAATGGCAACTTATACACCAACGGTGGACGAGTGTTGTGTGTGACCACATTAGGAAATACGGTACTCGATGCACAACAGCGTGCTTATCAGCAAATAAAAAGTATTTATTGGCATGGCTGTTTTTATCGCCATGATATTGGCTATCGTGCGATTGAGCGGGAACAAAACAAATAGTGGTGATTGGTTGTTTTTTTGAAAAAAACAACCAACTACTAACTAACAATTAGTCAGAAAACGTATTGATTTTATTTAATTTATTTTTTTAGAATTTTTTTGAATTAAAACTTCTGCTAACCCTTTTTCTAACAACAATTTAAAATTCAATAAAATCAGTATATTAAAAAACAGCTCAAAAAAAGGGTTTTCAAAGATGAAATTGTCGTTTATCTTTATAAAGCAGGGCTTATCGAATCTTAAGCTCTA # Right flank : ATAAAATCATCAAGATAATTATAAAAACAAAATAACCTCCAAAAATAATTGACTATGTTGTTTGTCTTATTCCTGTGTCAGAATATGACGCTAATATAGTCAGTTAGCACGCTAAATAGGGATGTTTGGCAAGGCTATGCTATGCTTTGCCGAGAGCCAAATTTGTTTGGAACAAATTCGAGCATCTAAGCAAATCAAAGATGGCCTCGATGAGGGCGAGTATCAGGATGATACGAGTAATTGCGCTGGGCAGCAGAAGGTCTCATTCTGCTGCCCAGCGCGGGGGGGTTTTTAGGGGAATTCGCAAAAAACTAACTCGGACGTGGTCATTATAGCTATTTGGAGCACCTAAACGACAAACGTCCGAAACCACTGCACCCAATTTACTCCATTCACAAAAATAAAAAGGCTTTATTTTTCGGCAACAAACGTTCCCATTATTTGGAATTTTGATTCTTATCGTTTTTTAAGTCTAGTATCGAATACTGACAAAATCCTAC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 29993-29413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000039.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29992 29 100.0 32 ............................. AATTGCCATTACCATTGTCTAACGTTGATTAT 29931 29 100.0 32 ............................. ATAAAAATGTTATTAATCAGGAAATCCATAAT 29870 29 100.0 32 ............................. CCCTTTTATTTTATTAAATATTTTCTATAGTT 29809 29 100.0 32 ............................. CAATTTTTAGCTCGCTTTAATGCATTTTGAAT 29748 29 100.0 32 ............................. GCCAAAATCTCCCCATTATTAGGATCAATAGC 29687 29 100.0 32 ............................. CAAAAATTTTTGCTCTGCATCATAAGTGGAAC 29626 29 100.0 32 ............................. TGTCACTTTATTGTTTTCTACACAGTCTTTTC 29565 29 100.0 32 ............................. TACCCTGAGATGGCGAAACGACTAGATCCAAC 29504 29 96.6 33 ....T........................ CCCTTGCGTTAAGGCTTCATTTCGTTGTTTGGC 29442 29 96.6 0 ....T........................ | A [29416] ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.3 32 CTGTACCCTATACACATAGGGATAAACCG # Left flank : AAGCATAAACGATAATGGGAACAGAGTATAAATCATTTTAACGCAAAGTTAACCTTTTTTGATGGATACTTTTGCTTAACGTAAGGAATTTTTGTGAGTTAAGCAGGTATCAGATATAAGGTATGTAGTAGCGACTTAACGCCTTTGTTTGAAAAAAGCAATTTAGGCAACGTCATACTTTGTTAAGTACATTTTTCAACCAGTTAAATTAAAAATAATTTTATGCTCAAACGGTATAAATTTCTGGATATATTTAACAAGAAATTCCGTCTTTTTAATAGAGAAAAGCTCATTTTTATTGCTAATTATGTTATAACTATATGAAATTTAAAGATTAATTGGTAGAATAAAAAATCACAATGTTCTCTCTATTTTTTTCTAAAATTACTTTAATAAAAACAATGCATTATAAAATCATGGTTATTTTAAAAATCATTGAAAAAGTTGGTAGAAATTTGGTGTTAAATATTTTAATGATAAAACAATGTGTTATAATTGGT # Right flank : TGACAAAATTTTTATTTATAATTTATTGAAAGATTCAATAAATTATGTGATAACTATCATACAGATCAAAAAGTCATTAAACCTATCTACCTTAAAGTAAAAAGAGCGATAAGCGCTTTGACTAAGATGTGATATGCCAAGTATTTAAAGATGCACAAGAAAAAAGATTAAACGATTACGTGTACAATTTTCAATAATGTTTAGATGACTATTTAAAACATGCAATATAAACAGTTCGACCTTTTCTAATGAATTATGTGAATTTAATAGATTTTATGTGACTTTTAAAGGTGTTATTGAAGCAAGTTAACGTTGGGCAAACTAATATTTATAAATCTCTCAATTAAAAATATTCTACTTGAAAAGTAGAATATACTTTTTTAAAGTAGGTAAGATCATTTAAATAATGATCTTTTTTACCACGCTCTACAAGTCCCAAACAAAATCTCTGGGACGCAATATTCAAAAAACAGTTGAGTATTTATTCCTCAAGGCTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTACCCTATACACATAGGGATAAACCG # Alternate repeat : CTGTTCCCTATACACATAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 243-1124 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGR01000008.1 Gilliamella apicola strain App2-1 Gilliamella_apicola_App2-1_contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243 29 100.0 32 ............................. GGCTACAATTCAATAGCTCAGCTGTTTTGTTT 304 29 100.0 32 ............................. TCTTAATGGATGCCTATATCGATAGAAAATTT 365 29 100.0 32 ............................. GTTGTGGCACCACAAACTCAATAATAGAGGTA 426 29 100.0 32 ............................. ACTTAATGAAAGAAAAAATCTTACTAGCTCTA 487 29 100.0 32 ............................. CGCATAATCATCAGCTATTCGTTCAAATGTAT 548 29 100.0 32 ............................. ATCTTACTTCAATAGAGCACACAAAAACATAC 609 29 100.0 32 ............................. TTATTAATGGCTTGAGGGTTTAATGCGGAAAC 670 29 100.0 32 ............................. GTCAACTCCGGAACTGAGTTAGAGATGGTTAA 731 29 100.0 33 ............................. TATACTTTAATTAGCTACGCAAGGAGTAAATAG 793 29 100.0 32 ............................. TATCAACCAGCATTAACGCAATTACTAAATCG 854 29 100.0 32 ............................. TAAACTCTCGGTTATCATTAAGTGGACATTTA 915 29 100.0 32 ............................. TAACGAAATAATTATCACCTTGGGTGAAAAAT 976 29 96.6 32 ...........G................. CCATTGAAGAAGCCGTTAAACACGCAGATGGA 1037 29 82.8 30 ...........G............CCG.T TATTGACGAAAACCTCACTGCAGAAGAGGT 1096 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.4 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : AGAAATTCCGTCTTTTTTAATAAAGAAAAGCTCAGTTTTATTGCTGACTGTGCTATAACTATATGAAATTTAAAGATTAATTGGTAGAATGAAAAATCCTAATATTCCCTCTATTTTATTCTAATATTACTTTAATAAAAACAATGCATTATAAAATCATTGTTATTATTAAAATCATTGAAAAAGTTGGTGGAAATTTGGTGTTAAATATTTTAATAATAAAACAATGTGTTATAATTGGAG # Right flank : GTATCAATACGCATTAATAAACATTAATCAAGGGTGTTTCGTATACCTATAGGATTTTCATTTTCGCCCATCTTTACAGAATATGACCTAAACAACAAATAGCTTGCTCTCTTGCTATTGAATTTATTATGTTGTTTTATACTAAAACATAGGTATTACCTGAAATTTCTTGACAAAAAACATTCAGTTTTTTTAAGAAATATCTCTTTTTTATCCGCTAGGCGGGTTATTAATATGTATTACTGTTTGCTTTTATTTAGTCGCTAAATCTAAAAGTTACCATTGTCTACATTAAGCATTTCATTTGAAATAGTTTCATACAATTAGCTTTTTAATAACCTCACAATTTCTTCAATATCATTCGGCGTTGTTTGGCAGCAGCCGCCAATTAATTTTGCGCCTAATTTAACCCAAGTTGGCAGTTGATTGCTGAAAGTGCAATTATGTTGATGATTTTTGTGCCACTGTTTAGTGATTGGATTGTATTGTTCACCTGAATT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //