Array 1 15304-14748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZM010000088.1 Clostridium botulinum C/D strain IZSVe-TV_4863_4_13 NODE_49_length_21709_cov_84.9085_ID_10643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15303 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 15238 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 15172 30 100.0 36 .............................. CAACAAAAAAAATGCACTAAAAAATGCACTACTGAA 15106 30 100.0 36 .............................. ATGAATTATAGAGTTTAGTATAATCACTATCAGATG 15040 30 100.0 37 .............................. AAGATAGTACTTTTATAAACTGCTTTAGATAATTTTA 14973 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 14907 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 14841 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 14777 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 18289-16415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZM010000088.1 Clostridium botulinum C/D strain IZSVe-TV_4863_4_13 NODE_49_length_21709_cov_84.9085_ID_10643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18288 29 100.0 38 ............................. ATACTTCTCTGTAAATCTCCATTTACAAGTGCTATAGA 18221 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 18154 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 18089 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 18022 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 17957 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 17893 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 17827 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 17762 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 17695 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 17630 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 17565 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 17496 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 17430 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 17365 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 17300 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 17234 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 17168 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 17102 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 17036 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 16970 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 16905 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 16839 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 16772 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 16706 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 16641 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 16575 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 16508 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 16443 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 21602-21240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZM010000088.1 Clostridium botulinum C/D strain IZSVe-TV_4863_4_13 NODE_49_length_21709_cov_84.9085_ID_10643, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 21601 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 21533 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 21466 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 21399 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 21334 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 21268 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AAATATTACTAGAAAGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTC # Right flank : AATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 9190-9941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZM010000082.1 Clostridium botulinum C/D strain IZSVe-TV_4863_4_13 NODE_33_length_33116_cov_132.477_ID_10611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9190 29 100.0 36 ............................. GAACAATTTGAAGGGGAAACATATTATATAGATATT 9255 29 100.0 37 ............................. CAACCAATAAAAGATACTGTTGCAAAAATATTAGTTG 9321 29 100.0 36 ............................. AAGAGAGAAATTCGAGTATTGCCAAAATCAAAATTA 9386 29 100.0 36 ............................. ATTATTTATTTGGATAATCGTGGTCACAAAATAATA 9451 29 100.0 36 ............................. ATTGTACTTTGATACTAAAAAAATAAATTTTGGAAT 9516 29 100.0 38 ............................. AAAATTAATTGTCTTAGGTAAGCTATTAAACTCTTTTA 9583 29 100.0 38 ............................. TCTTTATCTCGATATCTAAAACAACTAGAAGATGCAAA 9650 29 96.6 38 ........G.................... TTAAATACAGGAAATCTTACAGATATACCACCATTTTG 9717 29 100.0 38 ............................. GGATTAGCTGTATGCATATTTGTAAAAATTTTTGGTGT 9784 29 100.0 35 ............................. GGCTCTAACAATTGCGTCATTGCAGTATATCCAGC 9848 29 100.0 37 ............................. CTTAATGTAACACACTTAATATTTAAATCTTTAGCTA 9914 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 37 GTATTAATCAAACTATATTAGTTATAAAT # Left flank : AGATACTATGCCTAAAGTTGTTATATTGGGAGAATATAAATGGGGAAATAACGTATTTCAAGGATTAATAAATAAAGATGGAGTAAATATAGAGGGGCTTAAAGAAGTATTAGAAGAATATAACCATTGGAGAAATAGTAAAATATGGATAGGTGTTAGTAATAGAATATTAAATGAAGAATTTGAAACTGTAAAAGAAGATCTTGAAAAAGAATTTGGAAATTATGATGATATTGTAATAGGAAGTGTTAAAAACGCTTTTGATGGATATTTAGAATACTTAAAAGAAACTATGAAATAAGACTATATAATTTTGCAGTGAACCTCAGGTAATGTTTTTGGTAATTTTTTTAAATTTTATTGTAACCTAGTTGTATCAACGATTAGAGCAATTTATTGCAAAGAATCGTTCACTGCAAAATTGCAGGATTTATGTAGAATTTTTAGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGAGG # Right flank : TTTACAATTTATAAATTTATAAAAAGAAAGGTAATAAAGTATATGAATGACTTAAATAATAAATTAAAACAATATAAAGCAAAATCGGATGACACTACTATATTTAAACACAATAAAGATTTACTTGTGGCTTTAGAACAAGTATTAAATATACATAAAATATCAGAAGAATTGAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTCACTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATGAAGATACTTTAAATGAAGTAAAAAATAAATTGAATATAGAAGTGGAAGATATAACATCATACTTAAAGAAAATATGTAGGGGTGGTAGAGAAAATCATAAAAAACTACATGACAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATCAAACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 12193-14560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZM010000082.1 Clostridium botulinum C/D strain IZSVe-TV_4863_4_13 NODE_33_length_33116_cov_132.477_ID_10611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 12193 29 100.0 38 ............................. TAACTTGCAACTGCACCTATTTGTTTAGCTGTTACTCC 12260 29 100.0 35 ............................. GCAAAGTGATTTACTGCTGCTACTGCAGCATAAAA 12324 29 100.0 38 ............................. TTTTCTATAAGTACTTGTTCTATTACATCTAATCTTTT 12391 29 100.0 38 ............................. GTAATTTAACACGTTCATTACATCACCTTTTATATCTC 12458 29 100.0 38 ............................. CCAATAAAATCACAATTTAAGCATAGATTTTTGTTTGA 12525 29 100.0 35 ............................. TCGGGACAGGTATTGTTAAGTGATCTTGTAAATGG 12589 29 100.0 37 ............................. ATAGCTCCATCACCTAGCTGGATGCAAGAAAGGCTAT 12655 29 100.0 36 ............................. ATGGTTGGGCTATTTGTTTAGTGCTTACAATTGGAG 12720 29 100.0 37 ............................. TTTGTACTTTTCGATTATGTAATCTACATCTTCCCTA 12786 29 100.0 37 ............................. CATTTTCATGTTATTTTGATGGTCAATAAAAGTTATT 12852 29 100.0 37 ............................. GGTTAAATTATTAACTTTTTCATATTATTTGCTCTTT 12918 29 100.0 36 ............................. TGTTTTCTAATATACTAAGAATTTTTATTAATTCGC 12983 29 100.0 36 ............................. TGAGTGATGTTGTACGTTACACATACGATATCAACA 13048 29 100.0 36 ............................. ATTGTATAAAAGAACAGAGTCTTAGAAAAAACAATA 13113 29 100.0 35 ............................. TTATGGTTAAAGTTCTGTTCTTTTGCATTATATAC 13177 29 100.0 36 ............................. TATTAACATTAAATGATCTTGTTTCTGTTGCTGAAC 13242 29 100.0 38 ............................. TCATGTGGAATTACTTTTATATCATTATCTTGAATAAC 13309 29 100.0 36 ............................. ATGGAGATTAACTCTGCATATATATCGAATACTTTC 13374 29 100.0 37 ............................. GTTACTATGTATGGATTAAATATAAACTTAAATATAC 13440 29 100.0 35 ............................. AATGAATCTACTATTGTTTCTGCTGTTTTTTTCCC 13504 29 100.0 37 ............................. TTTGAACCATATCGTTAAAGTTTTTAATTACTGTTTT 13570 29 100.0 37 ............................. TGAGTTAATACGAGCAAATTTTAAAAGTGTCCCTCCC 13636 29 100.0 36 ............................. TATCTCATCCTCCATTAATAAATAATTTTTAATATT 13701 29 100.0 36 ............................. ATAGTAATAAGAAATAAATTAATAGAAATGGTTTTA 13766 29 100.0 36 ............................. TTTCTTCTAATTGATTAATGTGTTCATACATTTCTT 13831 29 100.0 36 ............................. TCGTTGTCACCTTACGGTAACAAGCGATATTTGAAT 13896 29 100.0 38 ............................. GAATTGGAAGGAACAGAAAAGCAAATAGCTTGGGCTAA 13963 29 100.0 36 ............................. AAAGTAATTACTACTCCTTTATCTATTTCCTTTTCT 14028 29 100.0 36 ............................. GATGGAAGAGATTTATTCAAGAAAGATATAATTAAA 14093 29 100.0 37 ............................. TATCAAGTATTTTAAAATCTAATGTACTATACTTTCC 14159 29 100.0 36 ............................. GTCATACTTGATACAATTTCATTTAAACCGCTTGGG 14224 29 100.0 36 ............................. ATGTCGAGGTTTATGATTATCAACATGATATTGTTC 14289 29 100.0 36 ............................. GATGAATTTTTGGATTTAAGAGTAGCAGAAGAAGGA 14354 29 100.0 36 ............................. AGGAACAAGACAAGTTGCTTCACAGTACTAAATAAA 14419 29 100.0 36 ............................. CTTGTTTTTTGCAACTTATCTTCAGACTTATCATTA 14484 29 96.6 20 ............................G AAAAAAATAGGTAATGGTAT Deletion [14533] 14533 28 82.8 0 ........TT......T....-......A | ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.4 36 GTATTAATAAAACTATATTAGTTATAAAC # Left flank : TATAATGAATATAAGGGACAAATACAGTTTATAATTGACAGCATTAGAGTGGGGTATTACAATCAAAATGCTTCAGAAGAAATGTTAAGTGATAACAATACAGTACAAGTATTGCCAAATAGTTTATTAAGTAAATTTGCTGAATTAAGAGAAGAAAAAAGATATGTAGAGGCTAATGAATTATTCGTAAATGCCAAAAAATATATAGCTAAATATGATAATAACTTTAAAATTTATACAACAGATTATGTTTATGATTTTAAGGGATTAATCATAGGAGAGATGGATATAAATAATCAAATGTTATAACAATTTTGCAGTAAACCTCTGGTAGTGTTTTGGGCAAATTTTTAAAATTATATTATAACGTAGTTATATCAATGGTTATAGAGATTTAATATGAAAAATCGCTTACTGCAAAACTTAATGGTTTTGTATTTAAAGTAGGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGGG # Right flank : ATCTGAATAAAGTTTATATAAATTGTCAAATATATAAGTATTCGGTTTCATTAGTTTGAAATAAAAAAAATTTTTAATGAAAGGAATACTTATGGATTTTAATTTAGAAAAATTTAAAACACAAGGTATTAAAGTAAACTATTATTATGTATGTAAAAGAAAACTTTGGTTGTTTTCAAAAGGAATAGCTTTAGAATCTAGTAATGATAGAGTAATGAGTGGTAAAATTATTCATGAAAACTCTTATAATAGGAAAAAGAATAAGGAAGTTTTGATAGATAATCTATTAAGATTAGATATTATGGACAAGGATTATGTAAGAGAAGTAAAGATAACAAGTAAAATGCCATTACCTGATAGAATGCAACTTCTATATTATCTTTTTTATTTAAAAAATATGGGTATAAATAAAAAAGGATCTATTAATTATGTAAAAGAAAAACAGACAGAAGAAATAGAACTAACCGATTCTATGGAAGAAAAAATTAAAAATACATTAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAAAACTATATTAGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 149-771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZM010000089.1 Clostridium botulinum C/D strain IZSVe-TV_4863_4_13 NODE_73_length_8729_cov_72.7006_ID_10691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 149 29 100.0 37 ............................. GTTTAAATTTAATAAAAATTCTGGTTGTGTAAAGGTA 215 29 100.0 36 ............................. TAAAACAGTTGGAATGACAATCGTTACTTCCGCTAT 280 29 100.0 36 ............................. GCTCAGGGTCAACTCAGCAAGTTGCTAGAAGGTGCA 345 29 100.0 36 ............................. AATTACTTTTAATAATAACGGTGATATAAAAGACAG 410 29 100.0 40 ............................. CTAACCATTCTGGTCCCAAATCTAACATTGATTTAGATAC 479 29 100.0 37 ............................. CAAAATTATTATCACCTATTTCTATAACACCTTCTGA 545 29 100.0 38 ............................. TTTATTACCACTTAATGCTATTCTTACTTTATCTCCAA 612 29 100.0 37 ............................. TGAACTTGAATAAGTAAGAATGTACTAGATGCTACAA 678 29 100.0 36 ............................. CTTATTAGTTGTTTTAAATGCTTTAACGTGTACCAC 743 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.7 37 CTTTATAACTAACATAGTTCTATTAATAC # Left flank : CAAAATCAGGTACTTCAAAATTTCTCATTTAGATTCCTCCTAAATTCTTATAAGTATATTATTCCAAACTAACCAATTTTCCATACAAAAAAGATGTAGGTTAATTTGTTTTTACACAAATCAACCTACATCCCCAAGTTTTATACAAC # Right flank : CCCCATTTTCCTTCTATTATCTTCATAATACTATATAACTTCATATCCTTTATAACCTTTTTAACATAAAATCACTAAATTTTGCAGTGAGCCATTTTTTATAGTAAATCTATACAAACGTTGATATAAGTAGTTTACAAGCTTGTTTTAATTATTTAGCAAAAACACTACTAGAGGTTCACTGCAAAATCAATACATTATAGTTACATAGTTTCTTTTAAATATTCTAAATATCCATCAAAAGCATTCTTTACACTACCTATTACAACATCATCACAATCCTTAAATGCTTCTTCAAGATCCTCTTTCACATTTTCAAAGTTTTTATTTAAAATTCTATTACTAACGCCTATCCAAATCTTACTATTTCTAAAATTATCATATTCCTCAATTACTTCCTCAAGACCTTTTATATTTACTCCATCTTTATTTATCAATCCTTGAAATACATTATTTCCCCATTTGTATTCACCCAATATAACAACTTTAGGCATAGTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAACTAACATAGTTCTATTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //