Array 1 75480-76104 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZOZ01000001.1 Fusobacterium necrophorum subsp. funduliforme strain CCUG 42162 contig_0000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 75480 30 100.0 37 .............................. GCATCTGATTCATTCTCATATTTTGAACTTCTAATTC 75547 30 100.0 37 .............................. TGAAAAACTTCCAAACACGCTGACAAAGGAGCAACTA 75614 30 100.0 37 .............................. ATCGAAAATTTTACGTTAAGAGAGCTTTCTGGAAAGA 75681 30 100.0 36 .............................. AACTCAGGAAATCAACGTCAGGAACTAAACGGAAAA 75747 30 100.0 35 .............................. GCAACTCCTCTAACATCGCCCCTAATTTCACACGA 75812 30 100.0 36 .............................. TCGGCAGTTCGGGACGCCTTAAAAGAAGCGGGAAAT 75878 30 100.0 36 .............................. AATGTAGCCTTAATTCTCCATGATCGCCATACTCTA 75944 30 96.7 36 ........................C..... TTTTATCGATTCTCATCACAATTTGAGCAACATCTT 76010 30 96.7 36 ........................C..... TTTTATCGATTCTCATCACAATTTGAGCAACATCTT 76076 29 93.3 0 .......................-.....T | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.7 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : AAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATAATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTACTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAGTATAAAAGCATAATATTATGCTTTTTTCTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAACACTA # Right flank : TATTGTTAATAAAAATCTTTAGAAAATAACTTTAAATAATAGATTTTTTTTATTCAAAACTTGAAATAAGATTTACATAAAAGCTTAAAAAGGGAGATTCCATTCTCTCTTTTTTCATAATTTCTTTCTTTTTTATATAAAGTTTGCTATACTGAAGGTGAAAACTCGTGAAAGGAAAGAAAGCATGGAAAAAGAAAAAATCAAGGAAATGTTGGAAGAACGCTTTCAAGTAATTCCTGCATACCCTAGAAAACGACATATTCTTTTTTGGTATGATGGACAGAAAGCATTTCAAGATATTATAGAGGAATTACAGCTTGATAAAGTAAAAATCCTTCGTTTGCAAAAAGGAGTCAATCGAAATGGAGAAGAAATTGATACCAATCTTTTTAAAATAAAATATACTTTGGAGATTTTGGATACGGATTCTCATTATTTAATTTATAGTGCTAATCCAAGACCCTCTAAGCATGAAAATTATCTCTTAGATATAGAAAGCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : GACTAAATCCAAGTAGATTGGAATCTTAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-88.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 94705-96852 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZOZ01000002.1 Fusobacterium necrophorum subsp. funduliforme strain CCUG 42162 contig_0000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 94705 30 100.0 37 .............................. CTCAAGGTATATTGGTTTCTTTGCTATATGAAGCCAA 94772 30 100.0 37 .............................. GATGAATATATAGAAACTTTAGTAAATCGACTCATAG 94839 30 100.0 35 .............................. CGTTAAATAGCGTATCGAAAACGAGCGAGAATTGA 94904 30 100.0 37 .............................. AAATATTCATTATTTCTCAATTTGTGAGAAATAAGGA 94971 30 100.0 36 .............................. TTTTAAGACAGGAAAGAACCCTTTGTTCAGAAGCCC 95037 30 100.0 36 .............................. TCTTTGGAGACGGTTCGGATTAGCTTGACAGGCAAT 95103 30 100.0 37 .............................. ATTTCTAATCGAATCTGTTCGATACTTTCGAAATATA 95170 30 100.0 35 .............................. CTACGATTACAGAAATCAACTATGCGGCGGGGATC 95235 30 100.0 35 .............................. CTTTGTGTCGTATTCCCTGTTTGTGTTGTATTGCC 95300 30 100.0 37 .............................. AAAAATTGGGACTAAGAAATTGAAATCCATAGTGGTC 95367 30 100.0 37 .............................. GAAGCAAGGAGACATACATAGACAAAGAAAAATATTT 95434 30 100.0 36 .............................. CTCAATAAATTGTCATAAGCTTTCTTATACAAAGCC 95500 30 100.0 37 .............................. TTTTCTGTCGCAAGATATCGCTTCGTTGCAGCGTCTT 95567 30 100.0 35 .............................. TTCCATGGGCTTCCATTAAACTCGTCATAATCTAC 95632 30 100.0 37 .............................. TCAGCTTTTATAGCTTGTTGAATCGGTTTGTATAATA 95699 30 100.0 37 .............................. AGAAATTATATAAACTTCTTCATTCCCGATCTTAAAA 95766 30 100.0 36 .............................. TTCTGACCCGGTCATCTTGCATTGTGTGCCAGATAT 95832 30 100.0 37 .............................. GAAAGGATTGAACCTTGAAAAACTGCCTAACTCTTTG 95899 30 100.0 35 .............................. TAGAAGGAACTATATGGTTTGATAGTGCTAACGGA 95964 30 100.0 38 .............................. TATATCCACTATCAAAACAATCCCTCCCGCTCCTATTC 96032 30 100.0 37 .............................. GAAATTTATGCAAATTTACAGGATAAGGAAAGAAAAA 96099 30 96.7 35 ...............A.............. CGTTTCGGCTCAAAATTTAATGAAATGCTAGAAAA 96164 30 96.7 36 ...............A.............. TATTATTTAACTGGGTATTGTACTTGTGCTGAGTGT 96230 30 96.7 36 ...............A.............. GCTGAAATAAGACAATATTGTCTAAGAAAAAAGAGA 96296 30 96.7 35 ...............A.............. GTGAAGAGAGAGAGAAATACAGACATGAATTAGAA 96361 30 96.7 35 ...............A.............. AAATAATAAGGATATGGCTGTGTTTCCGGATGACT 96426 30 100.0 36 .............................. AATTCTGATATTGTTTGATTAAATATAAAGTGACCA 96492 30 100.0 35 .............................. GTTCCGGTATCTCGGTTTTGATTTTCTCCGCTATC 96557 30 100.0 36 .............................. TCTCCTCTGTTGAACAGATGACCTATGATTGCATAA 96623 30 100.0 36 .............................. TTTAAACTTCCAAACTTCTCTCCCTCATTTAACAAA 96689 30 96.7 36 ...............A.............. TTTAACATCCCAATACTTCTTCCGCCGTCTTGTAGA 96755 30 96.7 37 ........................A..... TTTCTTACTATCTGGAAACATGCTATTTTTTCAACAA 96822 30 73.3 0 ..C........TT....A.TT...TA.... | T [96844] ========== ====== ====== ====== ============================== ====================================== ================== 33 30 98.5 36 ATTAGAGTATTACTAGAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTCTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTTGAACTATAACTAAAAAAGAGGTAAAAATGTTATGTTGGATTAAAAATTTGCAATATATGGGTTCATTATTGAAGATTGTTTGAGAGTTTCTTTTGAATTAAAAAAAGGGAGCTTTCATTGTAAGAGAATACGTAAGGATATGGTACACATAATCAGGTTACTGGAACTTCGTCCGACGACATCACCGTGATGTTGACAACTTTAGATTCCTTAAAACAAAGTGAAAGAGAAATTAATATGGAAGATATGAAAAAAAGATTTAGTAATTGTACAAATGACGAGATTGACAAGAGTTCAGAAATTACACATGTTCACTCTATTTCAAAAGAAGCTTGCAGAATTTATGTGGAAATAGTGAAAAGTCTGATTATAAATAAAAATTTAAAAGACATCTTAGAGAATTTGGAATGTACAAAAAATTTTCAAGATTAAAACATCTCGATACTTTGTAGGAAGAGCAATATATTATGAACGCTTTAGGAGGTAGTTTGTGATGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //