Array 1 30089-28979 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOPO01000014.1 Halomonas titanicae BH1 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30088 28 100.0 32 ............................ CAGAACCACGCCACCCAAACCGAGCGCATCCG 30028 28 100.0 32 ............................ AGCTACCGCAAAGCCAACGCCGCCCTGCGCAC 29968 28 100.0 32 ............................ TTAGTGGGTAGAGTTGCCATATGGCCTCCTGA 29908 28 100.0 32 ............................ TAAAGAGGACGCAGAGTTTACCCGCATTCAGT 29848 28 100.0 33 ............................ CTAAATCAAAGCCCTTTTTATAGATCGACTGGA 29787 28 100.0 32 ............................ AAGAACAACTTGGGCGAGTACCTGCAATTGGT 29727 28 100.0 32 ............................ TATACTATCGGCACAGATCAAGCCAGTTAGAT 29667 28 100.0 32 ............................ AGTCTGCCTCGGTTATAGGATATTCCCATGAC 29607 28 100.0 32 ............................ TTCATTGCGCGGGTGAAGCGCGATACGTCCGT 29547 28 100.0 32 ............................ ACTAGCACGGTGTCGCCCTTGCGAACTACGTC 29487 28 89.3 32 ..T........TG............... CAAAAACAAACCCTCGCTATAGCGCTTCCCAT 29427 28 89.3 32 ..T........TG............... AGTTTGCAGTATGCACGCCGGAGGAAGAGGAG 29367 28 92.9 32 ..TA........................ AGCCAATGCGGCGGGCGTCAGCATTGCCCAGG 29307 28 89.3 32 ..T........TG............... GTCGATCTCGCCGCTGGCGTCGTCACATGCAC 29247 28 92.9 32 .C..........T............... TACGCAACGGCCGCCGCGCGGTATGATGAAAA 29187 28 89.3 33 ..TA.........T.............. AGGAGGCGGGATGTCTGAAGAAAATCCCGATAG 29126 28 85.7 32 T.TA..............G......... GCCACACACCCTAAAGCCCTGCCGGTCACCCG 29066 28 89.3 32 ..TA.....T.................. TCTAGCGCAGCAACTCGTGCGGTCAACTTTGC 29006 28 78.6 0 ....................TATG.CT. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 94.6 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CACGGCTGGGGCAATTGATGGGCGCTGACTGGCTAACCGGCATGCGTGATCACACCCAAGTCAGCGAGGTGCTTGCCGTGCCCGCCAATTCTCAGCACTTCAACGTGGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGTGCCAAACGCTATGCCAAGCGGCATGACATTTCGGAAGATGAAGCGCAGCAGATTTATGCCAAGCTAGCGGCGCGGCGCATTGAGCTACCCTTCGTGCAAATAAACAGCCGCTCCACCCAGCAGCGCTTTAGCCTGTTTATTGAACACGGCAAGCCTCAGGAAAAACCGGTGGCGGGTTCGTTTAATCACTATGGCTTAAGCCCTGACGCCACAGTGCCGTGGTTTTGACCCTTTTTTCTAACATGAAAATAGGCGACCAATAATCAATCACTTAGCGGTGTCGCTCGAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : TAGATTTATTTAGTGTGCCCTTGGCACCGCTGCGCTTGAGGCTTATCACGCCTACTCGAAATGTGCATGAACCGTCATAAGTGGCGAGCATTGAGTCCTTCTGCCGGTTTCTGGTTATCTAATTGCAATTAATGGCAAAGATTACTTAGTTTTTGTGCAGCGTTGAGATATACTTATTTAGCTAGACGTCAAATTAAGCTATATCACTAACGTTAAAAGACATGGATCTTTCCCGCATGGACACTCATCACTTAGCGTCTGAACCGAAAAGCGTGGCCGCTCGTCAAGAGCCCGATAGTCTCTCGCTTTTCTTTCTGGTTTTTAAGACCGGCTTACTCACTATCCTTACTTTGGGGATTTACCGTTTCTGGCAAACGACTCGCATCCGTCAGTATCTTTGGGGCTCTACAAGCGCCAATGATTCTGCCTTGGAGTACACGGGAACAGGGCTTGAGAAGTTTATTGGCTTTCTCATTGCCCTGGTTATCCTGGCGTTGTAT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 276002-276569 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOPO01000002.1 Halomonas titanicae BH1 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 276002 28 100.0 32 ............................ CGGTGCAGATTCAAGCCGAAAGCCGAGCAGGC 276062 28 100.0 32 ............................ CGCTCGATGGCGGGCTAGGGAGTTAAACGTAT 276122 28 100.0 32 ............................ AACGGGCGATTAGGATGTGCTGTGGGCTTAAT 276182 28 100.0 32 ............................ AGGTTCGGCCAACGATACGGGGCCATCGGTTA 276242 28 100.0 32 ............................ AAATGCTACCCGTGCGCAGCATGACCACCTGG 276302 28 96.4 32 ........C................... CGCGGCGAATTGTGGGACACGTTTATCGATGC 276362 28 96.4 32 ........C................... ATGGTACGCAGTGAGTCTTTTACCCATAGCGG 276422 28 96.4 32 ........C................... CGCGAGAGGAGGTGAATAAATCGATCCGGTTG 276482 28 96.4 32 ........C................... TTGGAGACGATTGTTAAACAGCAGCCAGTTTC 276542 28 89.3 0 ........C...............T.T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTGAACCGTCGCATAGGCAGCTGAAAAT # Left flank : ATATAGCTGACGAAGGATTTATTGAAGTTAGTGGTGTTAAAATGGTTCCATCCACATTAGAGGAAGTGAGGTTTATTAGAAACCAGCATATTGCTAAGTCTTTTCCGGGCGAAATTAAGAGAAGATTGGCCCGTGGCAAAAAGCGGGCTGAAAAACGTGGTGAGACGTTCATGCCTATTAGCGTTGTATCAGATCGTTTGGTTGATCACTGCCACGTAATTCCTATTGATAGCCGCTCGTCAGGCCAACGCTTTCCGCTGTATGTCCAGCTTGAGGCACTCAGCGAAGAAAGCAAGCATGATAGCTACAATAGCTACGGCTTGGCTACACAACACTCGCATACTGGCTCTGTTCCAAATCTTAAACATATTACCTAAATATTTATAGAATATATATTGTATTACTTATCAATGTCTTATCTCTTATACGCCAAGAAGGGTATTTTTACCATTTTGTGTTTATCTCGTTGATATCTATATTTTAAGTACTAACTACGTCTA # Right flank : TAGGACTGGAAGCCAGCAACGGTAATGATACACACCGCCGCAATGGCAGTAATTGTTCTAAAACCTCCAATTTTACTTGGAGGTTTTTTTATAGTGAGCCTGGGATAGCGCGCAGCGCCCAATGAGGGGGTCATGAGGGTGTCCTCTGTGGGATTGAGGGCGGATGGTAGGGCTGTCGTAAGAACTTTTCCTACAACCATCGCTCGCCATGACATCTCCAGCAATGACACCTTCCGCCACCTAGGATTGATGCCTACTATGACCTTTTTGCAACTTCATGTCTCGCTTTTCCGAGTAAATGAAAAATGTTTTTACCGCCCCCTGTGGCGCTCTTCAGTACTTAATTCAACGCAAGAAATGAGGCATGGATCTTAAATAAATACACAGGAGGTGCGCTCAGTTTCTGCGGCAAAAAAGCAGATAATCTTAATGTATATTTATGACGTGATTTTATTACAGAAGCAAACGTTCGTTTTATTTTATGTCATCTAAAAATGGAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGTCGCATAGGCAGCTGAAAAT # Alternate repeat : GTGAACCGCCGCATAGGCAGCTGAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //