Array 1 18029-18385 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE348008.1 Gardnerella vaginalis JCP7719 Scaffold299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 18029 36 100.0 28 .................................... ATATCGCCCATTGATAAAGGTGTGATGC 18093 36 100.0 28 .................................... CGGTCTTGGTAACTCCGTCGTCGCCTTG 18157 36 100.0 28 .................................... ATATCTTCCATTAATAAAAGTGTGATGC 18221 36 100.0 29 .................................... CCAGTATGATGCAGGCACTAGCGTGGTAG 18286 36 100.0 28 .................................... TGAGATATGACAACTTTCCTCGAAGCTC 18350 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 6 36 100.0 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : AAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGGTACGCAATGGTGCAATTTTCTGTATATGTTCGTTATAGCCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCTCCACGTGGATCTATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAGGAGACTCCCGATATTGCTATGCTTTTTTAATCATAAAATGTCTTATAAAGGTTGGAATTCTACCATTCTTGACGATATACCAATTATATCAAGAATGGTAGAAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATGGTAGAAGCTAATTTTCAACTAACGCGGTCTTTGCCGTATCGCACTGA # Right flank : CTTATTTTGACGAAACGGTGGACGGTAACCAATTATATCAAGAATGGTAGAAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATGGTAGAAGCTAATTTTCAACAGATGGACGCGCTCGAGGATTTAATTGACAATTATATCAAGAATGGTAGAAGCTAATTTTCAACAGAAAAGTAATCGCGTGTTACAATCGCTCAATTATATCAAGAATGGTAGAAGCTAATTTTCAACATTCGAGTCTTTCAAAGCAATATGGCAACAATTATATCAAGAATGGTAGAAGCTAATTTTCAACATTACCAGCTGATAGCGAGGTTGTTTATCAATTATATCAAGAATGGTAGAAGCTAATTTTCAACATTCATAATCGCGGCAACAAGGTTATTACAATTATATCAAGAATGGTAGAAGCTAATTTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 18597-19145 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE348008.1 Gardnerella vaginalis JCP7719 Scaffold299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 18597 36 100.0 28 .................................... AGAAAAGTAATCGCGTGTTACAATCGCT 18661 36 100.0 28 .................................... ATTCGAGTCTTTCAAAGCAATATGGCAA 18725 36 100.0 28 .................................... ATTACCAGCTGATAGCGAGGTTGTTTAT 18789 36 100.0 28 .................................... ATTCATAATCGCGGCAACAAGGTTATTA 18853 36 100.0 28 .................................... ACTGGGCTAAGCGCAATAACTACGTAGT 18917 36 100.0 29 .................................... GAGTGGCACTATAACATTCACGCCTTTAT 18982 36 100.0 28 .................................... ATTCGAGTCTTTCAAAGCAATATGGCAA 19046 36 100.0 28 .................................... CAAAGCACACAAAGGACTTTGCACACAG 19110 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 100.0 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TATATCAAGAATGGTAGAAGCTAATTTTCAACCGGTCTTGGTAACTCCGTCGTCGCCTTGCAATTATATCAAGAATGGTAGAAGCTAATTTTCAACATATCTTCCATTAATAAAAGTGTGATGCCAATTATATCAAGAATGGTAGAAGCTAATTTTCAACCCAGTATGATGCAGGCACTAGCGTGGTAGCAATTATATCAAGAATGGTAGAAGCTAATTTTCAACTGAGATATGACAACTTTCCTCGAAGCTCCAATTATATCAAGAATGGTAGAAGCTAATTTTCAACTTATTTTGACGAAACGGTGGACGGTAACCAATTATATCAAGAATGGTAGAAGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAATGGTAGAAGCTAATTTTCAACAGATGGACGCGCTCGAGGATTTAATTGA # Right flank : CGAATAAATAAAAACGGGGAAGCTAGAAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTACAAATATATCATTTTTAAGAAATAAAAGACAAGTGATTTTTTAAGTTTTGTTAAAAGATTTGAAAAGTTAACATATCGATATATTCAATGAATGATGCAGTTGGAAATATTACTATTATTATGTTTAACATATATGCGTTTTTTAAAAAGTGCATTCCTAGAATGTATGTATGTACATAGATAGCATCCATATATTCATAATGGGAACGTTACTAATGCAGCGTTCCCATTATGTTTTTATAATATGCGACTTATCAGCGATTTACCAAATGTGTACGCGCTCGCTTGGATTGAGCCACATCTCGTCGCCTTCTTTAACGTCAAATGCATTGTAGAACAAGTCCACGTTGCGCGCAATGCCGTTAGTGCGGCACTCTGCAGGGGAGTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //