Array 1 13162-14788 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTSQ01000003.1 Escherichia albertii strain MOD1-EC5952 MOD1-EC5952_3_length_341676_cov_43.8806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================== ================== 13162 28 100.0 32 ............................ GCATCGCAGCATTTTATAAACTACGATTCACT 13222 28 100.0 32 ............................ CGGATTCTCTGAAAAACTATTAATCGCCGACA 13282 28 100.0 32 ............................ TTTTTGCTCACTGCGGGCGTTACTCACACACC 13342 28 100.0 32 ............................ TCAGCCAACCTACCGTTTTGGCTAGCGGTTGC 13402 28 100.0 34 ............................ CAGACCAGTCATTTTGTTCTCCATTTAGCTTGAT 13464 28 100.0 33 ............................ ACCCGGATAATTCAAGCCTGTGGTTACCTGTAA 13525 28 100.0 32 ............................ AACCGCTGGACCGGCAAAAACGGGGCGGAGCC 13585 28 100.0 32 ............................ CGGATGCAAACGTTGATGTAAATGACATCAAT 13645 28 100.0 33 ............................ TGCCACTGCGGTTGTGGCTATAAGGAAGTTAAT 13706 28 100.0 33 ............................ CACAGCATGTGGGCTTTATAGTCAGAAAATTTA 13767 28 100.0 62 ............................ GCCAGAATCTGAACGTCCAGAATCTGAACGTCCAGAATCTGAACGTCCAGAATCTGAACGTC 13857 28 100.0 32 ............................ ACTGCGCATTTGCCGGGGTCATACCCGCCATC 13917 28 100.0 33 ............................ AAAATGATTACGGATATCTTCCAGCACCGTAAT 13978 28 100.0 32 ............................ CGGAGGAAATCACATGGCGCGGCTAACAACAC 14038 28 100.0 33 ............................ TGTCCGCGTCCACGATAGCCGCGGCGGCTGTGA 14099 28 100.0 32 ............................ AACACGAACGGACCGCATTGTGAACACCTCTG 14159 28 100.0 32 ............................ CTGAGCCAAAAGTCACCGGGGTGGAAGTCTTT 14219 28 100.0 32 ............................ AGCTCGAGCAGCAGTATCAGACGTCTATTAAA 14279 28 100.0 33 ............................ CTAACTCAAAGCCTCCGTCAGTGAGTGCGACAA 14340 28 100.0 32 ............................ CCTGTGATTCGCCGGATTGTTCCGCCAGGCGC 14400 28 100.0 32 ............................ TTCATGCGTCTCTGGTAGCGACGGTGAGCGAT 14460 28 100.0 32 ............................ AAGGTCTACAACGACACCATGCGCCCGGTCAC 14520 28 100.0 32 ............................ GCAACAGATCCGGGTAGTAACTGTGCGTTTGT 14580 28 100.0 32 ............................ AGTAAGCAGGGTGATCTGTAGCGATGCTGACA 14640 28 100.0 33 ............................ TTTGGTCATTGATACCACTTCCCCAAGAACGTT 14701 28 100.0 32 ............................ CCGGTGATACGGGCGGAACGACGCGTTTTTTG 14761 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ============================================================== ================== 27 28 99.6 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGTTTTTTATTTAAGACGCTCAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCCTAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTCTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAATAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 136125-135485 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTSQ01000001.1 Escherichia albertii strain MOD1-EC5952 MOD1-EC5952_1_length_744146_cov_43.6115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136124 29 100.0 33 ............................. CGCTGGCAATAAACCCGGTAATACCAGACGCGC 136062 29 100.0 32 ............................. AATTTTTTGGCACTGGTGTGCCGCTCTAACCG 136001 29 100.0 32 ............................. CTGAAACCGCCGAAAAATTAGGTTTGGCTCGG 135940 29 100.0 32 ............................. AAATTCCGGTAATCGCAGGCGCTATTTATTGC 135879 29 100.0 32 ............................. ATTTTTAACGGCGAAATGGTGCGCGCCATTCT 135818 29 100.0 32 ............................. AAGCAACAAATGCCGTATACGGCACATTTATA 135757 29 100.0 32 ............................. CGCGGCGGTCGTGAGGCGCTCAACAGCGAGGA 135696 29 100.0 32 ............................. GCAAATTTCCAATGCTGAGAGACCGTTTTTGT 135635 29 100.0 32 ............................. CTGGCTCGTCTGGCTAACCTTAATATTGAGGA 135574 29 96.6 32 ...........................C. ATAAATTATGTCTACGGCGAACAACTGTACCA 135513 29 89.7 0 ......................AT.T... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACTG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCCGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTTGTTGGTAGATTGTTGATGTGGAATAAACTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCTTCTATTTTCAAACTCATCAGGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTCGCTTCAACGGAAAGTACAGCAATACCTGCTTTGTCGAAAACTTCTGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACCGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGCTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163219-162946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTSQ01000001.1 Escherichia albertii strain MOD1-EC5952 MOD1-EC5952_1_length_744146_cov_43.6115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163218 29 100.0 32 ............................. ATACGGGTCGCGACGCTGGGTGATTTACCAAA 163157 29 100.0 32 ............................. CCACCACGTCATCGACGATGGTCAATGTGTCC 163096 29 100.0 32 ............................. AATATGTTCTGCACAGGCTTTGAGGGCGAACT 163035 29 96.6 31 .............C............... GACTCGCAATCGCCGGAAGACGCGATCAGTT 162975 29 93.1 0 .............C..............A | A [162972] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GGGTTCCCCGCGTTAGCGGGGATAAACCG # Left flank : CTGGATGAGCTATTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCTATCCGGGACTAATCATTGCCATTCTCTACAAATTATGTGGCGTTAATTCTTTGTTGGAATGAAAATTATTGCGGTAGAGTTTGGTAGATTTTAGTTTGTATAGAATCACTTTAAATATTTAACTTTTCACTCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTTTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TACAGTTGCGTTCAGGCCGGGCAGTTTCCCGCCCGGTTTTCCTCATTTAGGCATTCGACCAGCTCTGGATTGAATCCGCATTCCCTAACTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATGCCCTTATTCATTGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGACATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCTGGGTATAACCCCAGTCCTACCGTCGTATTGATCGCCGCTCCCAGGCTTGCACAGCCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCAAGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGTTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //