Array 1 12228-13287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSFE010000034.1 Klebsiella pneumoniae strain GCKp40 NODE_34_length_56476_cov_32.954627, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12228 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 12289 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 12350 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 12411 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTTTTA 12472 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 12533 29 89.7 25 .....T......CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [12587] 12587 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 12648 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 12709 29 93.1 32 ............CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 12770 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 12831 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [12836] 12893 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [12898] 12955 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [12960] 13017 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 13078 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 13138 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 13199 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 13260 28 79.3 0 ..........A.CA..T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 92.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAACTCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134107-134684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSFE010000006.1 Klebsiella pneumoniae strain GCKp40 NODE_6_length_203837_cov_37.673199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134107 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG 134168 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC 134229 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 134290 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA 134351 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 134412 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 134473 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 134534 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [134543] 134596 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 134657 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143438-144143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSFE010000006.1 Klebsiella pneumoniae strain GCKp40 NODE_6_length_203837_cov_37.673199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 143438 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC 143499 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 143560 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 143621 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 143682 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA 143743 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC 143804 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC 143865 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 143926 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 143987 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 144048 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 144117 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 12 28 98.5 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //