Array 1 115030-118993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044130.1 Halomicrobium sp. LC1Hm plasmid pLC1Hm-01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 115030 30 100.0 36 .............................. GGCAGGTGGTCGCCGGCACCGACGACAACGAGCAGG 115096 30 100.0 36 .............................. CTGGGGCATGTCGTCGAGCTCGTCGATCGCGAGGAC 115162 30 100.0 34 .............................. GGTATTTGACGTGGGCTGATGTAAAGGCCATCCT 115226 30 100.0 34 .............................. GCCGCTCGGTGGTCACAGTCTGCCATAGGTGCTT 115290 30 100.0 35 .............................. GCGGCGGCCGCCGGGCGGAGTTAAACGACCAGAGC 115355 30 100.0 36 .............................. TTGAGACTCCGAAGGCAAAACTCGACGTTACCTTTG 115421 30 100.0 37 .............................. CAGGACTGGACCCACGACCCGGCAGGCACCATTTCGC 115488 30 100.0 36 .............................. TCGGTGTCGGGGTAGAACGTCACAAGCACGAAGTCC 115554 30 100.0 36 .............................. CCGCCGTCGGAGTCGAGTAGGCGAGCCCGGCCCGGA 115620 30 100.0 36 .............................. GGTGACCTGTCCACCGTCGGTCATCAGCGTGGTCTG 115686 30 100.0 35 .............................. CGCGACGGCGTCGACGAGGACGAGTTGCGCGACTA 115751 30 100.0 33 .............................. GGCCAGCGGCTGCGCGCCCGCGACAACGAACCG 115814 30 100.0 35 .............................. TATCTCGGATGGATCGGGTTCGAGACGACAGCCGT 115879 30 100.0 35 .............................. CGTCCGCGCAAGGCGGCCGCGTGGTCCATGATTTC 115944 30 100.0 35 .............................. AGTGTCGAATCTATCCACCGGGTCGCAAACGGCCA 116009 30 100.0 36 .............................. GACCGCATCCACGAGGCCGAGAGTGTGCTGTACGTG 116075 30 100.0 35 .............................. AACGGTTCCCCAGACCATGTACTTTCGGCCACTGA 116140 30 100.0 36 .............................. CCGACACGGAGCGGGTTGGTGCCGTTACAGTATACC 116206 30 100.0 35 .............................. GCCTCCTGCTGGGCGCGAGTCTTCGCGTGTCCGCG 116271 30 100.0 34 .............................. TCACGCCGTCCGTATCCCGTAGCATGACCCACGC 116335 30 100.0 37 .............................. AAACACGGCCTGTACTCCGACGTGATCCGCGAGGAGG 116402 30 100.0 37 .............................. GAGGTCGAGCGAGACGATGTCGATCAGGACCTGATCG 116469 30 100.0 33 .............................. GTACTCGCCGTCTTCGGTCAGGGCAATGTGCCG 116532 30 100.0 37 .............................. CGGGCGTGGATTGCACTTGCACAAGAACACGAACCGA 116599 30 100.0 37 .............................. TATCAGATCAACCCGAACTTTATGACCGAGATCGAGA 116666 30 100.0 35 .............................. CGTCGGTGTCCGAGACGGAGATCGCCGCGGAGCTC 116731 30 100.0 37 .............................. CAGCGGTGGGATACAGCAGCAGACCATCTTCGGTCCG 116798 30 100.0 35 .............................. GTGATCCAGTGGGCTCGGAACCCGTCGATATACTC 116863 30 100.0 35 .............................. GTGGTGCTGGGGTTCGGTGCGGTATTCGGCCTCGT 116928 30 100.0 35 .............................. ATTAGCGCCTCGGCCGCGACTTCGGCGGCGATGGT 116993 30 100.0 36 .............................. ACTACGCGATGGACGTGTGGCAAGGGACGGACCCAC 117059 30 100.0 38 .............................. AGCCATCTACATTAGGACAACATGACCTGCACCACCTT 117127 30 100.0 37 .............................. AGCCGAGTCGCGGGTGTAGGACTGTAACCCGCTCATG 117194 30 100.0 34 .............................. GGTCCGTAGACACGGGTACTGACCAGGAGGACCA 117258 30 100.0 36 .............................. CCTAACAATGCTCAGATCAACATCACCGGCGACAAC 117324 30 100.0 35 .............................. TGATTAGTCGGTAGTACGTCCGTTTGCGGTCCGGA 117389 30 100.0 36 .............................. CTGGGGCATCGTCATCAAGTCCACAGACCGATAGCG 117455 30 100.0 35 .............................. GCCACCATCCAGTCGACCGACGGCAACACGCTCGT 117520 30 100.0 36 .............................. GATCCCGACGACGGCCGTCGGCACCTGAAAGACCGA 117586 30 100.0 34 .............................. GTGATCCAGTGGGCTCGGAACCCGTCGATATACT 117650 30 100.0 36 .............................. CGACACGGAGCGGGTTGGTGCCGTTACAGTATACCA 117716 30 100.0 36 .............................. GCCCACCTGCTCGTCGAGATCGGCGGCGGCCGTCTC 117782 30 100.0 35 .............................. GAGAACTTGCGCGATAGTGGCTAAGGCGTCGACAT 117847 30 100.0 37 .............................. CGAGCGAGGTAGATTGCCTTCGCGAGCTTCGTTGCGG 117914 30 100.0 35 .............................. ATCTGGTCGGTGCGCTCGTTTTCGTCCGTACACAG 117979 30 100.0 37 .............................. TCGTAGCGAGTACCCTCTGCCCCGGGGTCGTAGTTGA 118046 30 100.0 37 .............................. TCGTAGCGAGTACCCTCTGCCCCGGGGTCGTAGTTGA 118113 30 100.0 36 .............................. GACTCATAGTACCCGCTCCATGCAGTCGGCGCACAG 118179 30 100.0 35 .............................. TACCGCGACGCCGACTCGCACACGTCGACGCGACT 118244 30 100.0 34 .............................. CAGCAGCGGGACGTGATCGGCCTCGGCCCTCCAG 118308 30 100.0 36 .............................. GCTTACTTAAACGCCCGGAATCGTCTCGTCTGGCCC 118374 30 100.0 34 .............................. AAGGCCTGTTACCCTTAGGGAAGATTGCGAGCCC 118438 30 100.0 37 .............................. CGGTGGTGGTCCATGTGACAGCGCCGGTCCCGCGGCG 118505 30 100.0 36 .............................. GTGGGCTACGTCACCGACACCGTGACATCTAACGGC 118571 30 100.0 34 .............................. TATGAGATCATCACCTGGAAGGCAAAGCTCGGTC 118635 30 100.0 35 .............................. AGCCAGTAATAGTCCTCAACGGAGAGATACTCCAG 118700 30 100.0 35 .............................. CGAGAAGTACAGGAACGGATAGAGAAAGAGCGCGG 118765 30 100.0 37 .............................. GCGAACGTGAAGGGCGACGACGCGCCGGAGCGGACTG 118832 30 100.0 37 .............................. AGTAGTCCATCCTGGATGCTGGCTGCTTGTTTGATAG 118899 30 80.0 35 .C..........T......C...A...T.T CTCCGTCCGTTCGAGCGGCTGAGGCCATCGAACGG 118964 30 76.7 0 .C.....G.CC..T..C.......C..... | ========== ====== ====== ====== ============================== ====================================== ================== 61 30 99.3 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : ATGTGTTTCGTCGAACCGTCGAAGACGCTTGCTGGGACGGCCTCGACGGCTTCCCGAATCGACGCCAGCGCATCGTCCGGAAATACCTCGGACGAGGTTTGGGTGCGGCGCTCGCTCAGTTTGGTGACCTCCTCGACGACGACCATACTCGCTCTCGACGAACAGTGGCCGGATAAAACCCGTCGCGACGGCCGTTCGAGCCCACCGGTCGCCAGGATACACTCACTCGAGGAGTCGGGCGGGGGTGGGGGCGAGGGAGTGGATCCATCCCCAGCGTTAACCAACACTGTATCGGTATCGGCCGAGAATGTTGGTTAAGACAATCGCACTGATCCCTCTGTCGGCGGTTTCTCGCCACGTCGACCGTGTCTCGCCTGCGTACTGGCCGGGGAGCACGCGTTTCCATCGACCCCCAGGGGGTTCGAGGGGTATCGAGGGTCGACGGAAACCATGAAGTGCAAACGGCAAATAGCGGTGTACACGTGGTCAAATCGGCCATG # Right flank : CTATCCGGTATCGTCTGGTGGCTTCCACAGGGCTTCCAGATCGTCCCGCAGATACCGGATCGATTCGTACCGATCCCGCTTTGCCGTCGCCAGCGCCGTGCGTACGATCTCGTCGAGTTCGGGCGGCACGTCGTCACGGTAGGCACTCGGGGCTGGCGGTGGCCCGTCGTCGCGGACGATCCGCTTGCGGACGGCGAGGCGTCCGCCGCTCACGGGCGGCTCGCCGCGTAGCATCGCGTACAGCACAGCGCCGACCTGGTAGATGTCCGTGACCGGGTCCGGTTCGCCGAAGGCCTCGGCGTCGAACTGTTCGGGCGCGGCGAAGTGCCGGGAGAACCCCTCCATCGAGTCGGTTCGGTCCCGCAGCTTTCTCGCGAGGCCCCAGTCGGCGAGCTTCGGCAGGTCCCAGCGTGACGGTGCCGTTTCGGTGAAGAGGACGTTCCCCGGCTTGACGTCCAGGTGGGCGATCCCGTACTCGTGTGCGACTTCGAGCGCGCGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1022108-1018721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044129.1 Halomicrobium sp. LC1Hm chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1022107 30 100.0 34 .............................. CAGTCACGACAGTCGACCCCGCCGGCACCAGCTC 1022043 30 100.0 36 .............................. TACGACTCCCCACACCAAGAGTGTTGGGTATCGGCA 1021977 30 100.0 35 .............................. CTTGACCCGCCGGAGGAGGCCGCTCTTGTCGACGC 1021912 30 100.0 36 .............................. TCGAAGCGGTTGTTGCGCGTCCGCTCTGCCGGCGGC 1021846 30 100.0 35 .............................. GGCTGGTCGTAGACGATGTACCAATGAACACACCG 1021781 30 100.0 36 .............................. CGTGTCTCGGCCACACTGGTCGCACTCGTATGACTC 1021715 30 100.0 36 .............................. GAGGCGTAGCGCCGTTTCAGTTTCACTTTCGCCGCG 1021649 30 100.0 36 .............................. TTGCCCGACGGCGTCGTGGTCATGTACCCATTTCTG 1021583 30 100.0 35 .............................. TGGGCGGCGTCGGCCAGGGCCAGGACGGCCAGCCC 1021518 30 100.0 35 .............................. CGACAGTACCACAGACGAAACCGGCGGCGACACCG 1021453 30 100.0 36 .............................. AGTCGCGTCGACGTGTGCGAATCGGCGTCGCGGTAC 1021387 30 100.0 35 .............................. GGCCCCACTCCGAGCCGCGCTGGAAGTGCCGCCGC 1021322 30 100.0 37 .............................. GACCCCGGCCAGAAAGTGACCGTCTGTAAGGGGTGCG 1021255 30 100.0 37 .............................. CCGTCGAGAGTGAGCGCGTTACCGTAGGCCAGCGCGA 1021188 30 100.0 38 .............................. CGGACCGAGATCGCCCCCTCGTCGTCGGCGTGAAGGTC 1021120 30 100.0 36 .............................. GGACACGCCAACTCCTCAAGGTCGGCTTCGATCACG 1021054 30 100.0 35 .............................. GACGGAGATGTCGACTGTCACGTCGGTCCCCGTGC 1020989 30 100.0 34 .............................. GGCCCGTCGACGGCCTAGCCGGAGAGGGACGCTA 1020925 30 100.0 36 .............................. CTTCGAGGAAGCCGCAGACTACAGCGGAGTCACCGA 1020859 30 100.0 34 .............................. CTTGTCAGCCGGATTGATCGTGAGGTCAGAACTA 1020795 30 100.0 35 .............................. AGGACCGCCTCGACAGCATCGAAGCGGAACTCCAG 1020730 30 100.0 33 .............................. CATCGGTCACGCGACACGGACACTGAATACTAA 1020667 30 96.7 38 .............................G GGCTACGGCTCGCTCTTCGAGGAGCAACTCGAACGGCA 1020599 30 96.7 35 .............................G TCGACAGCCTACCGGCTTGCAGAAGAGAAGGGTAT 1020534 30 96.7 35 .............................G GATACATCCGATGCTCTGGCGGGTCGGAACGATCA 1020469 30 96.7 36 .............................G GCACCATGACCGGGCGTCGCTGTATCCGGTCTCGTG 1020403 30 96.7 36 .............................G GAGGTCCAGACGGTACCGCTCGGCGGCCTTCCGCTC 1020337 30 96.7 34 .............................G CTCGGCGGCGGCTCGATCAGCCCGATGGTCGCAC 1020273 30 96.7 35 .............................G GCGTAGATGGCCTGCTCTGTGGCCTCGCTCGGCCC 1020208 30 96.7 32 .............................G CTCCACCGTCACGGTGGCCGATCCCGACACGT 1020146 30 96.7 37 .............................G CATCATAGCTGTAGGTCCAGGTCGTCGGTGAGGTCAC 1020079 30 96.7 35 .............................G CACCGAGGATGGCAAGCCCCGAGCGGCCGCTACCA 1020014 30 96.7 35 .............................G CGCTGGCCCCCTCGAAAACCACCTGTCGGATGCTC 1019949 30 96.7 36 .............................G ACTATCCTGTCCGCCAAAAACCCAGAGACCGGCGAG 1019883 30 96.7 36 .............................G AATCGTCAGGTCAATGTCGTCAACAGAGATTTTTTG 1019817 30 96.7 36 .............................G GTAGGGTGACGCTACTATCAGATGTGTCAATGACCG 1019751 30 96.7 34 .............................G CCGTCTAAAGCAATCTCCAGCGGGATCCCACGGC 1019687 30 96.7 35 .............................G GAACGCGTCCATGTCCTCAGTGCCCACGACATCGC 1019622 30 96.7 41 .............................G GTCGTGATCGCGACCGGATCGGTCCACCTGCCAGTCCGGTG 1019551 30 96.7 36 .............................G GACGTCGAGCCGGGCGAGGTCTGGACGTTCTCAAAG 1019485 30 100.0 44 .............................. CCGATCAGGCTGTCGTCGTCGGCCACGATCAGTCACCCCCTCCG 1019411 30 100.0 36 .............................. GGGTTCGGGGGCCCGAAACTACTACTCGGTTGATGT 1019345 30 100.0 36 .............................. GATCACGCGCTCGGGCAGGGCGTCGGACAGCAGGTG 1019279 30 100.0 36 .............................. CTGCTGATATGTGGGACCGTGCGGAAGAGTACGCTG 1019213 30 100.0 38 .............................. GCACAACGGGCAAAGGACAGAGTACCCGACGCCTATCG 1019145 30 100.0 35 .............................. ACGTCTCCGTCGGCTGGGGCCAGGACGTACTCGTC 1019080 30 100.0 37 .............................. AGGGTTCGGAGGAGGCGAAACGGAGGAGTTGCCGATT 1019013 30 100.0 37 .............................. AGCACGCGATACCTCAATGCTCACAGTCCCGCTAATG 1018946 30 96.7 36 ..............G............... ACGGCCAACGCGGTCGTGGTACTAAGATCATGAAAA 1018880 30 100.0 37 .............................. GAGACCGGCGTCACGTACGACCCGAGCGGATGGTCTG 1018813 30 93.3 33 ..........................G.T. CGAGACGCGAACGGCGACCCTGCAAGAACCCGA 1018750 30 93.3 0 ..........................G.T. | ========== ====== ====== ====== ============================== ============================================ ================== 52 30 98.5 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Left flank : GACCTGTGTGGGAGACAGGTCTGTGAGAACCACTACGCCGAGAGCGACGGCATCTGTACCGCCTGTCTGGGCGACGCCGGGAGTCAGCCGGACCGGCAGCCGGCGTCGGAGGACCTGCCCGACGGCGTCGACACCTACGAGTTCTGAGACGGATCATTGTAGATTGTCGACACCAAACAATCGCTACAGGTTTGCACTTTCCGGAGGTCACGCACTGTTCTACCGTGTTGCAGAGTCTCTACGTCACTCACAGGGTAGTCGATCCGGTCAAGACGCGGTTTACGAGGCTCGATAAGTGGTGCGAATGTACCCACGGAGAGCGTGGCTGGAAGATCGATTCCCGCGTCGACGGGGCGCTCGCCGACGCCGTCGCAGGCGATTCGGCCACGCCGCCGGCCTCGTTCCATCGACCCCTAGGGGTTCAGGGGTTATTGCGGGTCGACGGAAATAGTAAAGTGATTTCCGGCAGGATAGCCGCTATGGCCTCCAAATCGGCCATG # Right flank : CCCCTCCCCCCTGTCGCCACAGATATCACTCCAAATAGTAAATTCATACAGCCAATGATGTGGTCATACCAGATTCATACTTCCGATACGTGGGGCCACAACCATATTGTTAAGTGGGAGGCGCTTGAACTATGCGCCAGTGATAGATGAGGAGATAATATTCAGCCCATGAGAACAACCAGCTCCTACCTGGTTACCACGGCCCATGGGCACGGTGTCGAACAACCCAAATAACCCATCTTGGGTGACGCGATACAATAGGTGGTCAGCCCTAAAGACGATTTCGGTGGCAGTTTCAGAAGGTCACCTGCGTGGTTGAAGCATACTACCAATAACGTGAGCCACCACAAGTTACAGTCGGACTTCACTGAGGTTCTGCGGCAGACTACCCCCATTATTTACCACCCAAAACAATTAACACACAAATGTTAGAAGAATGGTGAACACAAAACTGTGAGAATATTAGTACGCCTTCGCGCACGAGCAGATACTGCCTACGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2022402-2023229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044129.1 Halomicrobium sp. LC1Hm chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2022402 30 100.0 35 .............................. TCGATCTGCTTGCCCGTCCTGGCGTCGAAACAGGA 2022467 30 100.0 36 .............................. CTGGAAATTAGAAATCGCCCGAAAGCGGCCGAATGA 2022533 30 100.0 36 .............................. AAGCCGGAGCGTGATGCTACCCACGTCCGTCGTCGC 2022599 30 100.0 36 .............................. ACCGCCGGGGCCGGCGATGGCGGCCACCTGCTTGAA 2022665 30 100.0 34 .............................. GCCGTCTGGGCCGCCGTTCACCCGCCCGCCATCG 2022729 30 100.0 35 .............................. TGCCCGGCGCGCTGGATATGGTAATAGCCGTCGTC 2022794 30 100.0 36 .............................. GGAGTCCACCACGCGGAATTGCCCGTCTTCAATCGC 2022860 30 100.0 38 .............................. GCGCACCTGTGTGACGGAACAGAGTTCGACACTCCCCG 2022928 30 100.0 38 .............................. ACGAACTGGATGGCGAGGACGATTACGGACAGTAATAA 2022996 30 100.0 40 .............................. CTCGCCCTCGGGCACGTCGTCGCTGGACTTCAGGATGCGA 2023066 30 100.0 38 .............................. ACGAACAGGGCGGCGAGATCATCGAGGCGCTCGACCAG 2023134 30 100.0 36 .............................. AGGACTACCACGGGTTGCTGTTGGTTAAAGAATCGG 2023200 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 100.0 37 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : AGCTGGGAAAGAAGGTGAGCTATCAGTATCTCCTCCGGGTCGAGGCGTACAAGCTCAAAAAGCACCTCCTGACCGGCGAGGAGTACGTCCCGTTCCAACGGTGGTGGTGACGCGTGGTCTACGTGGTCGTCGTCTACGACATGGAAGCCGACCGGACACACAAGATGCTGAAGTTCCTCCGCCGATATCTCACCCACGTCCAGAACTCCGTCCTCGAAGGAGACGTGACCGAGGGCGATCTCGAAAAGATCCGCTCTGGCGTCGACGAGCTGCTCAAACCCGGGGAATCGACGATCATCTACCAGATCTCCTCGGAGAAGCTGGTCGACCGAAGCGTGTTCGGTGACGATCCCGCCGCAGACGACCAGTTCCTCTAATACTGCCGGCAGTACACCCCCACTTCCATCGACCCCCCGGGGGTTCGGGGGCTATCGGAGGTCGACGGAAACGATGAAGTGTGAACGGCGAATAGAGATGTATACGTGGCTGAATCGGCCATG # Right flank : CCCGCTCGACGACGCCGTCGACCTCGACCGAGTTTCAGACGAATTCTTGAGGGCCCACAACACTGTCGCCGGGGACGATCGCCTCACTTCTTTCGGATCGTCCCGCCGTCCAGTCCCTCCCACTCGACCCGGTATCCGAGCGCCGACAGGACGGCGCTGGCGTCGTCGAGCCCGTACTCGTCGAGGATCGTCTCGGCGGCCGACAGCGACATCCCGGTCTCGATCTCGTCGTCGACTGCCGACAGCACGGCGGGCCTGACCAGCGTCCGCCCGACGCGCTCGTGGTCGGGAACGGATCGGTCTTCGACAGTGGCCTCGCTGACGCCGTGTGCCGCGGCCAGTTCAGCGAGCGTGAGCACGTCGGCGTCAGGGGTGAGTTCCTCGGGGAGCGTCTCGGCGTTTGCCGCCGTCAGCTCCGACTCGTATCGCCGCAGTGCGTCGCGAACGTCCTTGATCCGGACGGTGCCCGAGTAGGGGATTGCTCGGTGGTCGCGGGCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //