Array 1 15183-14883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCF01000004.1 Geobacillus kaustophilus strain Et2/3 LG51_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15182 36 100.0 30 .................................... AATGATGATGATGTACTTGCGCTTGCGGTA 15116 36 100.0 30 .................................... ACTAGTCCAGCATCAGACACCCAAGAGCCA 15050 36 100.0 30 .................................... CATGTTAAACATGTATAAAAAGCTAAATGA 14984 36 100.0 30 .................................... TTAGCGCCCCAGACAGCCCGCAGGAGAGCG 14918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : ATTCGAAAACCGGGGAAACTGTCCGTCCGTTACAATCAACTCGTGATTGAACAAGAAGAAAAAGTTTCTATCCCATTGTATGAGTAAGTTTATGCGATTGCTCGTCTTTTTTGACCTTCCCGTCGTGACCAATCAGGAGAAGCGCGAATACCGGCGATTTCGCACATTCCTGCTAAACGAAGGGTACGATATGTTGCAGTTTTCGGTCTACAGCCGCGTCTGCCATGGACACGAAGCAACGGACAAACACCTAGCAAGGTTAAAACGCAACTTACCCCCTCGAGGATCGATTCGGGCAATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTTGGGGAGCCGACAGCACAAGAAAAGAAAATCACATCCACCCAGCTGACGCTTTTTTAAAAAAACGGGAATGGTTCCCCTTTTTTGCATAAGCACATTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATAGCAGGCTTTTTTGGATACGT # Right flank : GCTTCTTCCATTATCCCCATCCTGCTAAGGAAAGGACTTGTTCGCCCCGTCCTTCTCTATATCCCCCTCCAACCTCCCGATAATCGCCTCTTGATACCCCGCCTTTTTGCGCCGCTTCATCTCTTCTTTCACCGGAAGCAAATCCTCTGCCGAGATCGATGCGAGTTTGGCGAGTCGCTCAGGTGGAAGTTCGACCGCTGGGTTGGCCGCCACGTAATCGTCCAAGGAAAAGCGCCAGAGTGCGACGGCCGAGCCGTACCGTTCAAGCAATCGTTCGGCCATGGCCAATCCTTCCGGGTCAAAATCGCCGGAGTAAAGCAGGCGCGCGCCAGAGACAGCGAGCAAATCCAGCAGTTTCATCGTCGCCAAGTTCATTTGCCCGTTTGTGCTCACAAGCGGGGCGCGGGTGTCAAGCAACGTGGAGAAAACACCAGCGTTTTCCACAATGTACACCGTCCCGCCGCGGGCAGGATAGGCGCGCGCAAGCGGCAGCACTTCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 746-1351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCF01000039.1 Geobacillus kaustophilus strain Et2/3 LG51_039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 746 29 100.0 38 ............................. GAAGTTGAACGTATAAAATTTGAACAGGAAAAATTCCG 813 29 100.0 39 ............................. TAACTTGTTCTCTTCATTAATTATTATAGTCATGAATGT 881 29 100.0 35 ............................. CAAACTATTCTCTAGGTGTTAATGTTTGTTTCATG 945 29 100.0 40 ............................. TTTAACAAGGATGCTCGAGTCTTTTCTTTATATTCATTAG 1014 29 96.6 37 ...................A......... TATCTATATGATAGCTTTGTAAGAGTAGACACGGGCG 1080 29 100.0 35 ............................. GACCGCATTACGCCGGCGTTTATCGCGGCTGGTGC 1144 29 100.0 36 ............................. ATTATTATACGATTTCCGCAATTGTAAAAAAGGATG 1209 29 100.0 35 ............................. CCGATTTCAAGCGGCAGGCTGGCGAGCACCGTTCC 1273 29 96.6 21 .................T........... AACCATTTCATCGCCGAAGTC Deletion [1323] 1323 29 86.2 0 .......T.........T......C...A | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 97.9 35 GTTTTATCTGAACGGAGAGGGATTTAAAG # Left flank : GGATGAACTATATAAACCGTTGAAAGCGTGGTGGTGAAACATGTTTGTCATCATTACGTATGACGTAGCGGAGAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATACCTCACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGCCTGCTGATGAAGTGCATGTATGAATTGGAGATGATCATTGATAAAGAAGAAGACTCCATTTACTTATACGAAATAGGAAATCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTGTTCCTCTAAGTTTTAAGAATTTGCAGTGAACCTCCTTTTAACGGATAAATGGGGAAAAGCTTGATTTATCAAGGGAAGTGTGTCATTATTTGCGCAGCATAGAAAACACAATTACTACTTTACTGCAAAATGAGGTATAATTGTTGTGTAGGCATTAGCCGGAATTCCCTGCTACATCAATGAATATTGCTTTGTAACTGATAGG # Right flank : TCGGCGATAATGTGATGCCCGAGTTCGACAGTGACTAGGCAAACAAAATGCCTTTCGTCCCTTGATGCAAAAGTGACGAGAGACATTTGGGCACACTTTGGGCGTGTAGCTTAGGCGCGAGGATGGATGCCTAGGATCTTCGGAGGAGGCTCCAGCCCTAGAGCCGCAAAGAGTTGCGCTTGTTTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGAGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 52541-55497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCF01000054.1 Geobacillus kaustophilus strain Et2/3 LG51_054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 52541 37 100.0 35 ..................................... CAAGCTGAACATCGTCACGAAGTGCCCGGCTCGCA 52613 37 100.0 34 ..................................... GTTTAACCCAATCGCTTTTGCTAATGAAGGCAAA 52684 37 100.0 34 ..................................... GTGAACCCACCGCTCCGCTTCGGCGAGGTCATTC 52755 37 100.0 34 ..................................... TTGAGTTTATACGCAAGTTGTTTCAATCCCTTAA 52826 37 100.0 33 ..................................... CTGCAACGGTTCAAGCGCCTTTTTAGGCAGTCC 52896 37 100.0 34 ..................................... TCGCGCAGGCAGCAAATGACTCGGCGGCGAGCGT 52967 37 100.0 35 ..................................... ACACATATCGCCCATCCCTTCTCAATCCTCACCAC 53039 37 100.0 35 ..................................... ATGGTGTGTTCCCGCCTTCCTGCTCACGTCAGGAC 53111 37 100.0 34 ..................................... AGAAATATTGCGAATTAGGTTGGCCAAGCCGACA 53182 37 100.0 37 ..................................... TGCGCAAAATGAAATAGAGACGTTTGTCGATCTCACC 53256 37 100.0 35 ..................................... TGTTCCGGATGAGGAAAAGATGTCTTTTCTCATTC 53328 37 100.0 33 ..................................... ATGCCATCGACGACTCTTGCATTTTCCGGCTTC 53398 37 100.0 32 ..................................... AAGAATAGATAATTGAATTGCTGAACCACCGT 53467 37 100.0 35 ..................................... GATCATTTTGGCAGCGCGACCGTCGATGGGGAAGA 53539 37 100.0 33 ..................................... AAGGTTGTCAATGGCGTATTTTGCTGCATCCTC 53609 37 100.0 34 ..................................... TCGGTCACTGAATGCCCCAACTTGGACGCGATAC 53680 37 100.0 34 ..................................... TCCGAGATTTGATGCGGCAAAAAAAGGCGCTTGA 53751 37 100.0 34 ..................................... TTATTACAGCCGTCTCTTGAATCGCCATCCGGTC 53822 37 100.0 34 ..................................... TTATTACAGCCGTCTCTTGAATCGCCATCCGGTC 53893 37 100.0 34 ..................................... CTGCAACAAGTCGCATACGGCCACGTGCAAGGAA 53964 37 100.0 34 ..................................... AACTAGGCGGTTGCTAGGGGGCGGTCAATAGTGG 54035 37 100.0 35 ..................................... AATTGAAAGAATAGCCTCCATCATTGAACACCTCC 54107 37 100.0 36 ..................................... TCGATGCCTTCGTGACATATTTTTGAGGAACATCCC 54180 37 100.0 33 ..................................... AAGGTCTCCAACGATAATCGGAGCGAATTCTGC 54250 37 100.0 35 ..................................... CTTGTCTTGATACAAGATACCATCGGCGAATCCTT 54322 37 100.0 35 ..................................... AACACATGCACTATTTAAACGAGCTAATGAAGAAA 54394 37 100.0 34 ..................................... GAGATTATTGAGATGGAAAGAAAAGAAGCACTCA 54465 37 100.0 34 ..................................... ATATCATCGACATTTGTGCTTCCGGTACACTTGA 54536 37 100.0 33 ..................................... TTATTATCGATTCGTCCGTCGTCTAGGATTCGA 54606 37 100.0 35 ..................................... CGAAATGTGTCCTATTCAAAAAGCAACGGGGACCC 54678 37 100.0 35 ..................................... CAAAATTCACGCCATGTACACGATTGACGACTTTT 54750 37 100.0 33 ..................................... AACATCCCGGAAATCATGGTTGAAAACACGATG 54820 37 100.0 35 ..................................... ATTGCCGAACTTGCAAAACACATCCCGGGAATCAC 54892 37 100.0 33 ..................................... AAAATCCACTTGAAAACCCGCGCATCCAACAAT 54962 37 100.0 35 ..................................... CCGCATCTAAGACCGGCATACGATAAGCACGCCGC 55034 37 100.0 34 ..................................... CTCCGCCGCGATCCCCAACGCCGCGCATAGTGAG 55105 37 100.0 33 ..................................... TTAATCCGGGTACGGCAATGCAAGGGGTCCCGC 55175 37 100.0 34 ..................................... TGTACTTTTCGATGTTTTGTCCCACTTTCTTATA 55246 37 100.0 35 ..................................... CCGTAAATTTCCAGCTATCCTGTCATGGGCGGAAC 55318 37 100.0 34 ..................................... TTTAGGTGTTTCAGCCTGACGAGCCAACACTAAC 55389 37 100.0 35 ..................................... CCTTTCCCATTGCGCAAGCGCGGCGACAAGCGTGA 55461 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 42 37 100.0 34 GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Left flank : ATTATTGGATATTTTAGTGACATACGATGTGGAGACATTGGAACCCAGCGGCCAAAAACGATTGCGGAAAGTGGCGACCATTTGCCAAAATTTTGGCCAGCGGGTGCAAAAGTCGGTTTTCGAGTGCAACGTCAATCAGGCTCAATTGGAAGAGATGGAGCATCAATTATTGCGTGTCATTGATTTGGAAAAAGATAGTTTGCGGATATATATGTTGTACGGTGACCGGTCAAAGGCAGTTCGCGTCTATGGAAAAGATCATTACATCGATTATAATGATCCGATCATTTTGTAGAAATGAGGAACAGCAATATTACAACGTGCGAACATAAAGCAATGGCGGAAACCTAGGGGAGATCGCGATGAGAGGAAAAGCTTGCAATAATGCGGAAAATAGAAAATGGACCAGCGCATGTCCTATCTTTGATACAAGTAAAATGTACAAATTCGCGTTTCTATGTCTTGAAATCCGCTTAGCGCAAGACATCTAAACGCGGGCG # Right flank : TCGTCGATGAGTGCACGCACAATTGGGAAGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.90,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1049-82 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCF01000075.1 Geobacillus kaustophilus strain Et2/3 LG51_075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1048 37 100.0 34 ..................................... TCAACATGATTCTGAAAGTGTTGCATGTTCGCTC 977 37 100.0 34 ..................................... AGCAACTCGCCTCTCGGAAAGGGGGTGGCCGGGT 906 37 100.0 35 ..................................... AGCAACAGGCGAACCAAATTGCGCTGAAAGCTGAT 834 37 100.0 34 ..................................... ATCTTGAGCTGGAAAAATATCAATGGGCGATTTG 763 37 100.0 35 ..................................... TATACGAGCGCCTCAAAGAACAAATGGGCGTCACG 691 37 100.0 34 ..................................... TACTAGCTCCGCGATCATCTCCGCCGCCGCCCTC 620 37 100.0 35 ..................................... GGGCATACATAAAACGCTTTGTAGTGCGGCGTTCC 548 37 100.0 34 ..................................... CACTCGCACAAGAACAGACGGTCGACTCCACTTC 477 37 100.0 36 ..................................... GAAATATCGCAGTTTACCACAAAAACGAATGAATTT 404 37 100.0 34 ..................................... AGATGTTAATTGATCGTATATTGCGGCCTTTGAC 333 37 100.0 34 ..................................... TGACAAATCGTGATACGGATTTCGCAACTTCATC 262 37 100.0 36 ..................................... AAATTTTTATTCTAAAAACTCAATAACTACGAATGA 189 37 100.0 34 ..................................... ATTTGCAAGGCGGACGAAGATGAGAACGGCGAAG 118 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 100.0 35 GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Left flank : TAAATTTCCAGCTATCCTGTCATGGGCGGAA # Right flank : CATCTAACGATACCAGGCGTGTTGATTATCCAATAAAATCCAAAGGGTATAGAAAAAAGAGCACCTTTCCTGTAGAATGTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.30,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37909-37516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYCF01000076.1 Geobacillus kaustophilus strain Et2/3 LG51_076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 37908 37 100.0 33 ..................................... CTATCGTGATTTGTGCCGTCTCAAATGCACCTT 37838 37 100.0 36 ..................................... CCGACTTCTACATAACAAACTTTCGGGAGAATATCC 37765 37 100.0 33 ..................................... CGCTTCTCCTGTTCTTCCAACTCTCCTTGCCAT 37695 37 100.0 34 ..................................... GATTTCTTTCCATATGAACTTTTGACCGCCGATC 37624 37 100.0 35 ..................................... TTATATTATTAAAACCTCTGACCGTGGGTGGATTT 37552 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.5 34 GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Left flank : TGCTTTGTTTGAGTATGCCCAAATTTATGGAAGGCGTATGTATAATTTTGGATAATCAACACTCGTGTAACGATACATTAAAAAAATCGGCTATAT # Right flank : AAATAAACAAGCACGTTGCGAGCAAAACAAGTGTGTATCAAAACCAAAAGAGGAAACATCCGTTAGCCCTTGGCTGAGGAAGCCAGGGGCCATTTTTTGCCGAGCAAAGAAGGAATTTGCCGCTTGCTGTCGAATTAATTTTTATGAAAACAGTTGCTTCACCTTTTCCACATCTTCTTTAAACTTCTCATGTGTTTTCGCAAGCACTTCTTCAAAGACGCCGTTCATTCGTTGTTCCAGCACAGCGATTCCTTCCCCGGTAATGCCGCCTTTGACGCATACTTTTTCCTGCAACGTTGGCAATGTGTACAGATTCCGCTTGAGCAGTTCCCCAAGGCCGATGATCATATCGGTCGCCAGCATCGTCGCTTGTTCTTTCGTGATGGCGGTTTTGACCGTCGCGGCGTCGATGAAGCGCTGAAGCAAATAGCTGAAAAACGCCGGGCCGCAGCTTGAGATGTCGGAGGCGACGCGGGTGATGGCCTCGTCGATGTACACCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.30,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //