Array 1 35831-34765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040428.1 Jejubacter calystegiae strain KSNA2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35830 29 100.0 32 ............................. TCACGAGTCCCATACGAACGCGTCATGCGTGC 35769 29 100.0 32 ............................. TCTTTACTCCAGGCTGTGCGCCAGTTCATGAA 35708 29 100.0 32 ............................. GCGTTGAGCGGGATCTTCTTTGACCCAGGTTT 35647 29 100.0 32 ............................. GCCGCTGGTGTTAACTCGCTGGCTGGTAATAT 35586 29 100.0 32 ............................. GTTTCGCCAGAACGTTCAGGATCCGGGCGCAT 35525 29 100.0 32 ............................. GCCGGGATGATTCGCTAACCAACTTAAGGTCA 35464 29 100.0 32 ............................. GAGGACTGTGGTGTTATCAGCCCCCGGCGAAG 35403 29 100.0 32 ............................. ATGGCGCTCAGTCAGGGAACCACTGCGCAGAT 35342 29 100.0 32 ............................. GCACTGTGTGACATCGTGAATGGTAAGCGGCC 35281 29 100.0 32 ............................. GAAAGCAGGGAGGCAGAAAGTTTTACCTTGTT 35220 29 100.0 32 ............................. CCGCAAGGCCCAGCACTTTTACGGTTACCTTC 35159 29 100.0 32 ............................. GATTAAGCGCGGAGCTGATCGGGTATGTGCTG 35098 29 100.0 32 ............................. CGCGCCAGTTCACTGACCTGAAATTTGCGGGA 35037 29 100.0 32 ............................. ACGGATATCCCAGTGCAGAAGATTTCCCATGG 34976 29 100.0 32 ............................. CAGTTCAGTGCGCACGGCCAGCAGCAGGGTAA 34915 29 100.0 32 ............................. CGATGGACGGTCTCTCGATGATTATCGAGCAG 34854 29 100.0 32 ............................. ATTCCGTGGTCGTGGTTCATAGAGTCACCTCC 34793 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 ATGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGCGATTATCCCTGGGAAATGAGCATGGTGAGAGTTAGAAAAAGCTGGTGGGATAAGCGTCAGTCGGCTTTTTCTATGGCGACTCCAGAGGAGCTGGAACGCTGGCGCAAAGATCATCGAAGAGGACAGGGTATGGTGATTGTTCTTTCTTCCTGCGATGAGCCCTGTGGCTATTCCTGCCATACCGGGCTGGAGGGGAGTTTATAAGCGCTGGCGCTTCTGGATTCGGGTAATGATTTGGGGACCGGTCTCTGCTCAGGCAGAAGGTGGGAATGTTGTTATGGCTTGGGCGACGAATTCTGAATCGGGATTTGAATTCCAGACTTGGGGTGAAAACCGAAGGATTCCGGTAGATCTGGATGGCCTTCGGCTGGTTTCTTTCTTACCTGTTATTAATCAATAGGTTATCAATTTCGGAAGGTTGCTTAATTGTTGGTTAAAGGTTGGTAGAAAGATGCGACTTGAAAAAGCTCTTTAATAACAAGTATATATTTTTAGT # Right flank : TGGAGTCCCTGAAGGCAGGTTACGTAGCCAGCCTCTAAGCCTTCCCCTTCGCCAGCTCCTTCACCAGCGGGTAAAGCACGCTGACCACCTGGCGGCCGCGTTTTTCGATGCGGCCGGGCAGGTGCTTGTCCAGGTATTGCGGATTGTCGCGCTTAACGCTGTGCCATTTCAGGGCGTCGGCGGTGGCGGTATGGCGGGCGCTGATATTCAGTACCGGGATACCGGCCTGATCGAAAGGCGTGACGTCGTTCGGCGTATCGCTGCTCTGGAGTCCGGCGCTGGCGGGAATTCCCCTGCGGTGGGCCAGGGTCAGGGCGCGATCGCGGGTCAGCTTGCGTACGCTGCCGGGGGTGTTTTGGCCGCTGTTAAACCACAGTCGGTCGCCTGCCACCAGATTATCCAGGTTAATGACCAACAGGATATTTTGCTGCTGGTCCGGGCTCATGCGCTTTAACACATCCCTGATGCCCGGCTGCTCTTCATCACGGCCGCTGGTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41416-38902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040428.1 Jejubacter calystegiae strain KSNA2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41415 29 100.0 32 ............................. AACATTGTTAACTACTGGGATGAGTGCCAGAA 41354 29 100.0 32 ............................. GAGATACAACATGAACTACACACTTTTGGCTA 41293 29 100.0 33 ............................. CAGGTTCATGGGAGACGGGGCGACCAAAAACAT 41231 29 100.0 32 ............................. TTTGTCGTGACACGCTCTGCACAGCGGAATCA 41170 29 100.0 32 ............................. AAACGCTGCCAGCCTGCAAAATGACGCACGAT 41109 29 100.0 32 ............................. GTCATCGTAATACTCTTTTCAGACGCCGGTTA 41048 29 100.0 32 ............................. TGTGTGTGAGCCTGGATGCAATCTATGATGAA 40987 29 100.0 32 ............................. CTACCTTTTTCTGCCGCGCTTTTGGTAAGGGC 40926 29 100.0 32 ............................. AGACGCGGCAGACGCCAGGGCGCTGGCCCAGC 40865 29 100.0 32 ............................. GCCTGCCCTTTCGGCAACGTCACAATATTGGC 40804 29 100.0 32 ............................. GTTATAACGTCCTGCAGCAGTGGTTTGTAGGG 40743 29 100.0 32 ............................. TGCGTATAGCTTGTTGTCATCGAAATTCATCA 40682 29 100.0 32 ............................. AGCGCAGCCACTGGCACTCAGGCAGCAAATAA 40621 29 100.0 32 ............................. CCGAGAATCTCACTATGACCGAGTTCGTGCTC 40560 29 100.0 32 ............................. CCATCCTGAGTTGGTCTTCACAACACCAGCAT 40499 29 100.0 32 ............................. AGCATGGGTACCATTCCCTGTGGCTGCATATC 40438 29 100.0 32 ............................. CCAGACAGCCCGGCGATATCGATAATTAGTGA 40377 29 100.0 32 ............................. ACACCAGCGGATATCTGATATCTCTGGCGGCT 40316 29 100.0 32 ............................. CCTTGATCAGTTCCGGCGGGTAGCTCGCCATC 40255 29 100.0 32 ............................. GATCCAACGCCACAGAACGTCCAGCACCTCGC 40194 29 100.0 32 ............................. TTTCGGGAATGGTTCTCAGGGCGCCCGGGTAG 40133 29 100.0 32 ............................. ACGAAGGCATTCAACGCCAGATTTTGTCGAAC 40072 29 100.0 32 ............................. GTGGAACGCGAGGAATATACAACCACGCCGCA 40011 29 100.0 32 ............................. CAGGTTTTAGCATCTCCGATTGATGTCGCAAC 39950 29 100.0 32 ............................. CTATTCAGATTGATAACATGGTTGCGGGTGGC 39889 29 100.0 32 ............................. GGATATTTAACTCCATATGGTCTATCGCCACT 39828 29 100.0 32 ............................. AGGGCTAACCGATAGTTACATCAGGATTCAGG 39767 29 100.0 33 ............................. CACTAGAGTTATTGTTATCCGATAGCCGCGGGA 39705 29 100.0 32 ............................. CTAACGTGATGAACGTCGCTGATCGCATGAGC 39644 29 100.0 32 ............................. CGTGGGCGTCTGCACCCGCCCGACCGACAGAA 39583 29 100.0 32 ............................. CGAGCCCGGCTGATGCGTGACGGCGGAATGAG 39522 29 100.0 33 ............................. GGCGATATTCACGGCGGCGCTAAAGGGGCAGCG 39460 29 100.0 32 ............................. GCCCGCGCTAAGGCCATGGATTCTGCGGTCAG 39399 29 100.0 32 ............................. ACCAGCCGCGATACCCAGAACGTTCTGCGCAA 39338 29 100.0 32 ............................. CGGCCAGCGCCGCCAGCGGCTATGTCCGTTTT 39277 29 100.0 32 ............................. AACGCAGCGAGACCAGCACTGCCGTATGTGGC 39216 29 100.0 32 ............................. ACGATCTATAAGCTTTTCCGGCGGGAAAAAGC 39155 29 100.0 32 ............................. AAACTCGTCCTTTGCTGTTATCTGGCTGAAGG 39094 29 96.6 32 G............................ GGTTCGAGCCAGGTATGTTCGCTATCGGTCTG 39033 29 75.9 12 G.............CA...C.C...CG.. GAGATACATCTC T [39019] Deletion [38993] 38991 29 96.6 32 G............................ TATGTCAGCCAGCCGAAGCAGGCACCGTACAA 38930 29 86.2 0 G..................A......T.A | ========== ====== ====== ====== ============================= ================================= ================== 42 29 98.9 32 CTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGGCTGCGGGGGAAATTGAACCTCCGGCACCCGCGCCGGAAAGCGTTCCTCCTGCGATACCAGAGCCTTATTCGCTGGCGGATAGCGGGCATCGGGGACGCTAAGAATGAGTATGCTGGTGGTGGTGACTGAAAATGTGCCTCCCCGTTTGCGGGGACGCCTGGCTATCTGGCTGCTTGAAATCCGCGCAGGTGTCTATGTTGGCGATGCCTCTGCGCGTGTCCGTGAAATGATCTGGGAACAAATCTCGGTGTTAGCGGCAGAGGGAAATGTTGTGATGGCCTGGGCAACCAACAGTGAATCGGGTTTTGAGTTCCAGACTTACGGGGAAAACCGAAGGATTCCGGTAGATTTGGATGGCTTACGGCTGGTTTCTTTTTTACCTGTTAATAATCAGTAGGTTACATTTTATTGTGTGTTGGTGATTTGTTGGTAAAACGTTGGTGAAAAGTTTTATGGTGAAAATGTTCTTTAATAACAAGGATATGTTTTTAGT # Right flank : CTAAGAGAAAATATGACCCAGACAATCTTTTATATCGTAACGAGTTGATATTGCTCATAGTATTGTTAGCCAGGGGGATAGACTATTTCACCATCACGGATTCCAGGGGGGAAAGATGGATCTGTTTTATGGCTACTGGGGAAAGACCCGACAACGGAACGATAACGGCGGAGATGATTATCATCTGCTGGTCTGGCATTCGCTGGATGTGGCTGCCTGCGGTTACCAGATGGTGCAACAGAATATTTATGGTAGCGCAGATATCTTTGCACGCCTTGGTATTAGCGATCGCCATCAGGCAGCGGAGATGTTTGGCTGGCTGTTGTGCTGGCACGATATCGGTAAATTCGCCCGGGCGTTTCAGCGCCAATATCAGGCGCCAGAATTGGTGGCTGACAAGCCGGGTGTGGCATACAGCGGCCATCATACCGCGCTGGGCAGCTGGCTCTGGCAAGATAAATTTCGCGAGCGGGCTTCTGATTTTATCTCCAGCGGTTTGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2406219-2407956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040428.1 Jejubacter calystegiae strain KSNA2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2406219 29 100.0 32 ............................. CTCTTTGTCCCCCTGAATGCGCCGCAGCTTTT 2406280 29 100.0 32 ............................. CCACCAGGACTGTTCGCCCCCACCATGGTCAG 2406341 29 100.0 32 ............................. GCCGCTGGTGTTAACTCGCTGGCTGGTAATAT 2406402 29 100.0 32 ............................. GAATGCGCTTTCATGTTGTGTGCCGGTTACGG 2406463 29 100.0 32 ............................. GTTGCGACCAACATACCCCGCAGCGGAGCCAG 2406524 29 100.0 32 ............................. CGCAGCCCACATAAAATCCCATTCGTTACTTC 2406585 29 100.0 32 ............................. CAACCACTCTTAACAGATTAAACGGCCTTTTG 2406646 29 100.0 32 ............................. CAAGTTGGCGTACCTGGTGCCTCGCGATGGCT 2406707 29 100.0 32 ............................. GCTAGTGCTTCTTTTTCGTTATCCTTGTAGTT 2406768 29 100.0 32 ............................. CACTCACCGATTTCCTTTAACGGGGTCATGAT 2406829 29 100.0 32 ............................. ATTCTGACCTTTTTTTCACGTAAGTTGTTGTT 2406890 29 100.0 32 ............................. AACGCGTCCTCATCCTGCGTAAATAACCTGCT 2406951 29 100.0 32 ............................. CGGGGCTCCCAACGCGAATGGGTCGCTATCTA 2407012 29 100.0 32 ............................. AGATCGACGAAATATGCGCTGTTGATAACCTG 2407073 29 100.0 32 ............................. TAGTGCTCGATGCCCAGGAACTGGAAATGCTG 2407134 29 100.0 32 ............................. CGAAATTTTTAAAACGCTGCAGATGGTCCGCC 2407195 29 100.0 32 ............................. CTTCAGCCCACGAAGGGAGCCAGCCTGTTTGA 2407256 29 100.0 32 ............................. CTACAGCAAAACATACAGGCCGTTTACGCTGA 2407317 29 100.0 32 ............................. GGAGGCCCTGATTAGTTCAATTTTCCGTTTGG 2407378 29 100.0 32 ............................. CGTCTACGTGCTCAGGAATTCCAAAAACGTAG 2407439 29 96.6 33 ............................C GAATAGCGCCGCGACTGCGCCATCCTGCGCCAG 2407501 29 100.0 32 ............................. TTGAAAATGGAACTCGGCGCTCATCGCCAGGA 2407562 29 100.0 32 ............................. CGTCCACTGGCGGAGAATACGCTGAAACGAAT 2407623 29 100.0 32 ............................. GGCATTAGGCTGATAACTCGTTATGGTTCATG 2407684 29 100.0 32 ............................. GAAACTGGCGATGGCGAATAACACTGCAATGA 2407745 29 100.0 32 ............................. ATCGCTATAACCCGCTTTCTTGGCCTGTTCAG 2407806 29 100.0 32 ............................. TTGCTGCAGCCATCAAGGCAGATTCCAGCTTA 2407867 29 100.0 32 ............................. GGTGGGTGGGAGATCACCCCGGGGAAACGGCG 2407928 29 89.7 0 ..........................GAA | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGGAAACAGGCGCCGTTTACCTTTATCCTGCCGTTTAACCCGTCGGACGTGAAACCGAACGCTCGAATTCTGCTGAGCGCGGCTGTTACGGTGGATGATAAGCTGATGTTTATTACCGATACTATCCAGCCGGTGGTGAACAACGGCGTAACCAAAGCGGACATTACGCTGGTTCCGGTGCAACAAACGGCGGTGCCGGTGAAGCCGGGCCCCAATCCCGTGAACCAGGGCGGAATGATGTCGGGTTCGCAGCAGCAGGGGGCGGCTTCATCAACGCCGGCCCTGTACTGATTGCCGTTCACTGCTCTGCTAAGGCGCCTTCCAGGCGTCTTTTTTATGACACACGATCGGTGAATGGCAGATGGCCTGTGGCGACGAGGTAATGAATCTTTAATAATCAATGGGTTATTTTTTCTGTGCCACCATGATTTATGATGAAAATGGTGGTAGATTTTATCTGCTATAAAAAGCTCTTTAATAACAGATGGATACGTTTAGA # Right flank : AGTTCAATAGCGCCAGCGGTAACGCTGAAGATCGATCTCGCCGCGTCCGGAAACTTGCACCCCTTCGGCCAGCAGCGCCTGACGCTGACGCTGGAGATCGGGACCGGTCAGTGAAATCACGCCATGGCGATTCACCACCCGGTGCCAGGGCAGGCGGCTACCTTCGGGTAGTCTTTTTAGCACGCCACCCACCTGGCGTGCCGCTCGTGGGGAACCGGCCAGCTGCGCGACCTCGCCATAGGTGGTGACGCAACCTTCGGGAATAGCGGCGATAATCTGGTAGACCCGGCTGGCGAAGGTATCCTGAATCTCTTCCATTGCGTTGCTCCTGTCGTGGGGCCACCAGAATAAACAGCCAATGGGGGAGTGTGAAGAGCGGGTTGTGCAAGAATCAGGCATCCGGGCTGAGTCGGCTTGCAATTGCTCCAGCGTATGGGGATAATGCCCCGGCGCTTGTGGGGCTGGCCCCGCAAGTCCTCAATGGGGGCCCTGTTGGTTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3971931-3971482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040428.1 Jejubacter calystegiae strain KSNA2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3971930 28 100.0 32 ............................ TTCTGGTCAACCTGCCATCGGGTGCGAATCAG 3971870 28 100.0 32 ............................ AATCCGGGAATCACTGCCCGGGGAGTGGCTAA 3971810 28 100.0 33 ............................ CGGCACGCTTTACCTGCGTCATGTCGGCTTTCT 3971749 28 100.0 32 ............................ GCCCTCCCTCACCAAAAAGCTGATAAGACAAG 3971689 28 100.0 32 ............................ AACGTCTATTCGCAGGTCCAGGATATTTCCGC 3971629 28 100.0 32 ............................ GTAATCAAACGTCTGGACTTCGCTGGCAGTGG 3971569 28 100.0 32 ............................ TCAACGTATGGTCGGTTTCCAGCTGCGTTTGT 3971509 28 92.9 0 .......A................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTGTTTGGAGACCTGAGTGGCTGCAAACGCGCTAAAGGAGAATGCAGACGCAACAATGGCGGTGATTAAAGCTGTTTTTTTCATAATAAAGCATCCTTGTTGGGTATTGAATGGACGTTAAGACACCATATCGAGTGTAGCCCAGGCGTCGAAAAAATCTTGTTTCGAGCGAAAAAAATAGTAACAGACTGATTTATAAATTCATATATTTGTGTCGGTTGATTGCTCCTGGAATGTGGCGCAGATCAGAAATACGCACAATCTTATTATTTTTTTTATTTAGCCATGGTTATTTCTTCATCGATTTTTCATTTATGGTCGTCGACCATTTGCTACAGGACATGAGGCATAGTCGATAGCATAGCTTCAGCCCTTTTTTTGGGGGAACTTGTAACTTATTGATTTTAATATTGTGACTGTAAATGTCTGGAAAAAGGGTTTTTGGCGGAATACCACTTTTTTACTTTTAGAAACAGTCGGCTACTGTTATTTTTTATCA # Right flank : TGATGGTGTTTTACCGCCATGCTATCAGTAAATATTCTGACCTACGGCTGAGAAGGGCGTAGGTCACACTTTACGCCGGCATACTCTTCCTGATACAGGTCAGCAACGCCTGGGCGCCGGGGGAAAGGGGCGCATCGACCCGGGTCAGAATGCCAATGGGCTCGCCCGCGCCGTGGGTGGGTACCGGCAGGGCGTTCAGGGTACCCTGGCGTAGATCCTCTTTCACCGCGCCGGAAGGCACAAACCAGACGTACTGATAGTCCACCGTCAGCTGGCGCGACAGCGAAGCTGACAGCGTTTCGATGCAGGAGGCGGGCAGCTTACAGCCTTCACTGGCCAGCAGCGCTTCGGCATTCTGGCGTGGTACCGTGCCTTTGGGCGAAACCACCACCGGCCACTCCATTACCCGACTAAGTGTGACGTTGTCACGCAATAGTGGGTGATCGGGGCGCACCACCAGCTTTAGCGATTCCAGAAACAGCAGCTCATAGTTAAGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //