Array 1 21960-21792 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990369.1 Helicobacter canadensis MIT 98-5491 supercont2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21959 36 100.0 30 .................................... TTTCGCCCTTTTTTGTTAGAACTCAAGCAA 21893 36 100.0 30 .................................... TATAGAAACTTTGGGGCAAATTCCATAACA 21827 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Left flank : AGAAAACATCTAAAAAATAAAAAAGCTAAAAATTCATGGGAAATTTTTGATTGTTTTTACCTTAGGGATTTGGAAGATATTATTAGCTCTCATTGGGATATTTTTGCACCTATTTTTAAAGATAAAAAAATTATAAAGGGAAAGAATTGCCATGTTATGGCACAAAAGAACATCTACTAACTAAACTTAGTCAAATTAGACAGGCAAGAAATGAAATTTTTCATAATAAATCTACAAAAATGAAATTCCGCAAAGAATTAGAAATACTGCTTTTGCGTTTAGATTATTGTTTGGAAGATGTCATTGAGATTGGTGAGATTTCAACAGGCATTAATCTAAAATACAACTACAAGCAACAATATACAAATGAGTTGTAATTCACAAGCAAACCATTTATATTTGGAAAATTCTTTGTAATTTTAGCTTTTTTTACAAACTCGCCTAAGAGGCTATGCTGATATGCAAGAACACAAATTGAATTCGTCTTGATCGTTCCCTAT # Right flank : AGATACCTAAAAAACCAAGAAATTTAGGGATTTAAGTAGAAAAATTAGTAAAAAATATGCTAAAATCTTTCTAGAGAAATTTAAAAAGGGACTAAAATAAGTGGTTTTCGGTAAGCCACGCAGGATTAAAATTCCTTTTAAAACCGAATCTTTTAATCTTATTTTTTAGTGATAGGTATTAAAGATTCTACTTCAAAGAGATGATATAAATACTTTGACAAAACTACTTTTTAAGTAAAACAAACTTAGTGATTCTAAAGTAAAAAAATGAAAAGAAAGACAAGATTTTTGTAAAGTAAAGGTGTAGAATCTCATTTTGATATCTTTTATTATTTGTTATAGTCACCATTACAATATTTTATCTTATCTATTTTATTTTCTATTAAAAAGGCATATTATAGTAAGTCTTTTAAGAGAAACTTGTTTTTAAAAGCTTCCATAGTAATATGATAAAAAATAAACCCAATTACAAGCCATAGTTCCCACCATTTAAAAAAATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 316930-317163 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990370.1 Helicobacter canadensis MIT 98-5491 supercont2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 316930 36 100.0 30 .................................... AAAAACTGCTTTTAGAATGGCATTGCAAGG 316996 36 100.0 30 .................................... TTTAAATCCGATAGCAATGCATTAATTTAC 317062 36 100.0 30 .................................... TTTAAATCCGATAGCAATGCATTAATTTAC 317128 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Left flank : TTCTTTTGCATAAGAAGAAATAATATAAGCCCTAAGTGCGCCATATTCAATCAAAACTAACCCGCGACACTCATCTTCTCCACTAGCGATTCTCTGTCCTTTTGCGAAACTCTTAGAATAAACTCTCTTGCAATAAATCTCCCTATCTTCTTTGGAGACTTCCCATTTTTCCATTAATTCCAATATTGTTTGTTGCAAATTTTCCCTTTAGAGACTTTGAAATTCTATATTTTGTCAAAATTCGCCTTACAATTCACTAAACAGTTAAACAAAGACAAACTAATCAATTTCACATTCACAAACCAACCAAGCAAAAAGGACTTAGGCTATTAGTTTTATATGGATTTTAAATGAGTCTTTATCTAAAAAGCATCAAAAGATATAAAACTGCTATAAAGAATCTTTGAAGTTTCACTTGATAGAAGCAGAATCTTAAAAAATACAAATCTTAAATTTCTTTATGGTAAAATATTACAGAGCTTAGAGTAGAAAAAGTCTAT # Right flank : TTTATACCTAAAAAACCAAGAAATTTAGGGATTTAAGTAGAAAAATTAGTGAAAAATATGCTAAAATTTTTCTAAAGAAATTTAAAAAGGGACTAAAATAAGTGGTTTTCGGTAAGCCACGCAGGATTAAAATTCCTTTTAAAACCGAATCTTTTAAGCTTATTTTATTAGCAATAGCCATTAAATCAAAAATATTTTAATAGCTTTTGCATTCAAAGAATAAAATTAATCACTCTACAAACTACACAAAAATATCAAATGTGCAAAATCAACAAAGTTTTTATTACTTTTAAACAAATATAATCCTAATTGCTTTTTTCTTTTAAATTTTATGTTAATATCTAAAAAGACAGAAATTGCAAAACAAAAAAGGATTAATAATGAAAGTTTTGGGGTTTGATATTGGTATTAATTCCATTGGTTGGGCATTTGTAGAAAACAATGAACTAAAAGATTGCGGTGTTAGGCTATTCACTAAGGCAGAAAATCCAAAAACCAAA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 322140-321972 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990370.1 Helicobacter canadensis MIT 98-5491 supercont2.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 322139 36 100.0 30 .................................... TAAACATTGTTATAAGTAGGTCTATGAATG 322073 36 100.0 30 .................................... TAAAGATATTCTAAAACCTGCTATCAAGGA 322007 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Left flank : TTTTCCATTAGTAGCCACAGAAATTAAATCAATAGCAAAAGCATTGCTTAAAAGACCAGCAATTACAGATAAATACTAATTTTTTATTTAGTTTTTTATTATATTCCTTGTTTTACCAAAATTTATTTATAGATTGAATATTTTGTATGAATCAGTAACACATAATCTAAAATTGTAGCTAAATAAGTGTTTTGAAAACGAGCAACTCCTATTTTACGAATCTAGAGAGCCTTATTTTTTCTCAAAAAAGGCTTATCAATAGCGTTGAAATAGTCGTTTAAGGTTTTTCACATTAAAAAAGTTACCTTTAGCCATTTTTACACCTCTCAAATGCCCTAAAATACGACATCGATTTTTTTCTAAACAAGATATATTAAACAAGAATCTATATTAAACAAGGGAAAATGGTTTAAGGTTTAAATCCTAAAAAAGATGAATTTTTGCTATAATTATACTTAGGGCGAGGTTACTCTTTGTAGCTACAAATGCTAACGCTTTTG # Right flank : TTATACCTAAAAAACCAAGAAATTTAGGGATTTAAGTAGAAAAATTAGTGAAAAATATGCTAAAATTTTTCTAAAGAAATTTAAAAAGGGACTAAAATAAGTGGTTTTCGGTAAGCCACGCAGGATTAAAATTCCTTTTAAAACCGAATCTTTATTTTATGCTTTCTTTGGAATATTTATAATCTTGTGTATTTTCACTCCATTCAAAAAGTGTTAAATTCTTGCTATTATTTATCTGTTCATTAAAGGATGCTTCTCCCAAAAGTATTTGCATATTATCAAATTGCTTCTCTGTTATTATTAAAACCCTTATATTTCCACAAGGTGGTAAAATCTTTTCTATAGATTTTATGGTGCTTTTGGCAGACATTAGCCCTTTGCAGATTCTTACATAAACGCTAAATTGCATCATAAAAAAACCAAGCTTTATTAATGCGTTTCTAAATTTTGTAGCATTTTTTTGATCTTTTTTGCTTTTTGTTGGCATATCAAACATTAGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //