Array 1 251558-248966 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDZ01000015.1 Klebsiella pneumoniae strain K404 K404_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 251557 28 100.0 33 ............................ CAGTTGAAACTGACCCGGCACTAGAAACCATTC 251496 28 100.0 33 ............................ TCAGGATGACGGAGGAAAACCCGACTCAGGGTG 251435 28 100.0 34 ............................ TATTGTGGATGCGTGGAACCACTTCATTGACGCA 251373 28 100.0 33 ............................ TATACCGGTCAACTCTTACACATACGTGCGCGA 251312 28 100.0 33 ............................ TAAAGAGCATGACCCGACGTGGAAAATATGGGT 251251 28 100.0 33 ............................ CAAACACCAGGCCGCGCAGCTTATCGAAGTCCT 251190 28 100.0 34 ............................ TTTCATCGAGCCACAATCTTTGGCTTGGTGGATA 251128 28 100.0 33 ............................ TAATGTCACCAATAACAGCAGCGGAGCAACAGC 251067 28 100.0 33 ............................ CACACACATTACGATTCGGGTCGGAGACATATT 251006 28 100.0 33 ............................ CGCCTATATTCAGCAGCGAGTGGCGAACAATAA 250945 28 100.0 33 ............................ TAAGGTGGTGGCTGAGCGCTCTGATAAAGGCAG 250884 28 100.0 33 ............................ TGACAAGGCCACAGGTGAAAAGAAAGAGCAAAC 250823 28 100.0 33 ............................ TTGAAGAAGTAGTCACAACGTTGTTTTGCAGAG 250762 28 100.0 33 ............................ TAGGCCGCTTCCTGCCGTGAGCTGTTCACTGGT 250701 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 250640 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 250579 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 250518 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 250457 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 250396 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 250335 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 250274 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 250213 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 250152 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 250091 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 250030 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 249969 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 249908 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 249847 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 249786 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 249725 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 249664 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 249603 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 249542 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 249481 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 249420 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 249359 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 249298 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 249237 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 249176 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 249115 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 249054 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 248993 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 43 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260950-260311 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDZ01000015.1 Klebsiella pneumoniae strain K404 K404_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260949 28 96.4 33 .............A.............. TAGCTGAGGAAAGACGGACGTGGCGTGATGCAA 260888 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 260827 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 260766 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 260705 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 260644 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 260583 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 260522 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 260461 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [260452] 260399 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 260338 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.4 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //