Array 1 23774-24961 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCUS01000037.1 Escherichia coli strain VREC0413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23774 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 23835 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 23896 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 23957 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 24018 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 24079 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 24140 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 24201 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 24262 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 24323 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 24384 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 24445 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 24506 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 24567 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 24628 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 24689 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 24750 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 24811 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 24872 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 24933 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76902-75896 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCUS01000019.1 Escherichia coli strain VREC0413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76901 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 76840 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 76779 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 76718 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 76657 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 76596 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 76535 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 76474 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 76413 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 76352 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 76291 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 76230 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 76169 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 76107 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 76046 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 75985 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 75924 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //