Array 1 58676-59185 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVVI01000011.1 Enterobacter roggenkampii strain GN06520 GCID_ENTE_00303_NODE_19.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 58676 28 100.0 32 ............................ CTAACTTCCTCGTGCTCCAGATATTCCGTTGA 58736 28 100.0 32 ............................ TGGTGGAGTCTGCGGAGATACCAACCGCCCAC 58796 28 100.0 32 ............................ CGTATTGTGCCTGACGGATGGCTGGCAGTACC 58856 28 100.0 32 ............................ TGGATAGCGGTTTGCCTTGCAACGTCACCCTC 58916 28 100.0 34 ............................ CTGATTGGCTCCATCAACCTGGTGGCGCAATGGT 58978 28 96.4 32 ......C..................... TGCTCGAATGCTGCCAGGTCACGCTGCACTGC 59038 28 100.0 32 ............................ ATAGAGTTTTCAGGTTTTTGTGTCCTGTTACC 59098 28 100.0 32 ............................ TATCAAGTCAAATGGTTCGCCTCTGGTGCGAG 59158 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGGTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTAAGTTTTAAGTTGTTGATTTCAAAACGGTGAATTGTTGGTGGTGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCCAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAGCGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGAGACGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACTTCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 74090-75138 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVVI01000011.1 Enterobacter roggenkampii strain GN06520 GCID_ENTE_00303_NODE_19.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74090 28 100.0 32 ............................ GTAAACGCCGGCAAGCGTTACACAATCAGGAC 74150 28 100.0 32 ............................ CAGTAGAGCTTGCGAGAACTCCGGAGTTAAGT 74210 28 100.0 32 ............................ GTTAAGATAGAAAATCATATTGGTGCGCCCGT 74270 28 100.0 32 ............................ GGCAGACTCGCCAGCTCCACGGGGTAAAAACA 74330 28 100.0 32 ............................ TGTTACTGTAACCGGCGGAAGGGGGAGTGGAG 74390 28 100.0 32 ............................ ATTTCACGGCAGGCATTATCAGCAGGGGCATC 74450 28 100.0 32 ............................ ATGCCAACTTACTCTGTGCCTGGTTACATTGA 74510 28 100.0 32 ............................ CATCGCCCAGCATTCCGTGTATTTATTCGCCT 74570 28 100.0 32 ............................ TAAATGAGCGAGCGTCGGCCAGAAGAAGTCAT 74630 28 100.0 32 ............................ TTATCTCGGATATTCTTAGACCGAAAATTAAC 74690 28 100.0 32 ............................ AGGTAGAACGGGAGGAGGGTGTCGTCGGCGTG 74750 28 100.0 32 ............................ GTTCATCGTATTGAGAGCGAGATGCGCCAGCT 74810 28 100.0 32 ............................ ACTGTGAATTACCCTGGCGTTTTAGTGTGTAC 74870 28 100.0 33 ............................ ATCCATCACCAGGCGCTGTGAGCGTGTCAGTAA 74931 28 100.0 32 ............................ GTGATGGATATGGTGTTACGTTCACAGGCTTC 74991 28 100.0 32 ............................ CGCACTTATGGCGAGTGGTAAAGATTGAAAGG 75051 28 89.3 32 .........T.....A....G....... AATGAGCAACATCGACAAACAGGCGCTACACA 75111 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTCCCACAAACGCAGCCCGTATGTCGTTGCCTCGGGGCTTATCTGGAAGAGGTAAAATCCGGACTCACAGAATCTATGCGTGATTTTCAGGTGGTGGAATTTGAGGACAAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGATCCCGATATGCTGCCGCACCTTACAGGGCTACTCCATGACATTACGCATTCTATGGCCGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATTTAGTTTGTGGCGTCGGGGATAATCCCTGGACGCCACTGGCTTGACCCTTTTTTTTGATGATTGCGTAACCTTTTGATTTATATAATGCGAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTC # Right flank : AAAAACAACTCTCTAAAACATTCAGCTTACCTATTTAAAACTTAATACGATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCTAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATTCAGGTGAATGGCGGGCGTGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACACAAATGGCAATGCGGGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 84633-85081 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVVI01000011.1 Enterobacter roggenkampii strain GN06520 GCID_ENTE_00303_NODE_19.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 84633 28 100.0 32 ............................ CGTCAGCTTTCCGGCGGAGAGCTGCGCCGTCT 84693 28 100.0 32 ............................ GTGTTCTTGAAGTTGATGAAAATGGCGCAGTT 84753 28 100.0 32 ............................ CAGCGGTTTTCGCATAATAACCGCAGGGTCGA 84813 28 96.4 32 ....A....................... CCAGCAGCGTATCCGCTTCCTGCATTCACTAT 84873 28 92.9 33 ....A.....T................. GCATGAATCGCACTTCCAATGTGCGCCGATTTA 84934 28 92.9 32 ....A.................G..... AGTATCCACCGGCGACTTTACTGACGGCATCG 84994 28 85.7 31 ....A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [85019] 85054 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.4 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : GAAACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATCGGTGTTTTTGTGAGGGTGATGAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGTGTTTGTGTAATTTATTAATTTAAATGAGTTTTTTGGTGGGTAAAAAAGAGAGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAATGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //