Array 1 1397-458 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMX01000064.1 Flavobacterium columnare NBRC 100251 = ATCC 23463 WGS0041_contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1396 36 100.0 30 .................................... TTCATTTGTCTAAAAATCTCTATATTTTTA 1330 36 100.0 30 .................................... TATGAAATCAGGTTTAATATTAGACACTGT 1264 36 100.0 29 .................................... CTTCTCGTGCTTTCACTTTCACTTTCTTA 1199 36 100.0 30 .................................... TCACATTTACGGGACCAGCTGTCAGGGTCT 1133 36 100.0 30 .................................... TATTGATTGCGTCTCTTTTGTGTTCGTGTT 1067 36 100.0 29 .................................... TCACGTCGTTAGGTTGATTATTAATACAT 1002 36 100.0 30 .................................... GATGTTTTTAATTTGTTTTATTGTATATTT 936 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 870 36 100.0 30 .................................... TGAAATTTCTTTTACCGCCGTATCCACTTT 804 36 100.0 30 .................................... TCAATATGAGGCATGTTAATTCCAGTAAAT 738 36 100.0 30 .................................... TATAATACCCTGACGACCAAATCTTTTACA 672 36 100.0 29 .................................... CTGTCTTACAAAGCAATCCAGTACGTGGA 607 36 100.0 29 .................................... TTGCGCAAAATCTGTGATATTGTTTTTAC 542 36 100.0 13 .................................... CACACACACACAC Deletion [494] 493 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.0 29 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAAGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : GTTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAAACA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 9190-10264 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMX01000101.1 Flavobacterium columnare NBRC 100251 = ATCC 23463 WGS0041_contig_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 9190 36 97.2 30 ......A............................. ACTATGTTGGAAGAATTTCACGATAATGTG T,TATAA [9191,9199] 9262 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 9371 36 94.4 30 T.....A............................. CAAAGTTCGGTATTCGTAAAAAGAAGTAAC ATAAT [9380] 9442 36 100.0 29 .................................... AAGACTTATACAGTGCAATAGGATTTAAA 9507 36 100.0 30 .................................... CATATCAGTCATACTAACCGACTGCGGGGT 9573 36 100.0 29 .................................... TTCAACACCTTTCTTTATTCATTTTAAAA 9638 36 100.0 30 .................................... ATAGCTCCTCGCTGTTTCATTAAATACACT 9704 36 100.0 30 .................................... TAAAAAAACAAAAGAAACAGTAGATGTATT 9770 36 100.0 29 .................................... AAGAATTAAACAGAGATATAAAGAGACTA 9835 36 100.0 29 .................................... CGAATGTTTTTTACAACTGAAGCTGAACC 9900 36 100.0 30 .................................... TAATTAATGGGCAAAAACTTAAAATTCTGA 9966 36 100.0 30 .................................... AAAAGAAGCTAAAGCGATGTTAAGAGCATT 10032 36 100.0 30 .................................... AAAAACATTTTTATTGAAGGAGTAGCGGGA 10098 36 100.0 29 .................................... GCCTGTTTTTTTAAAATAATCGTGCCAGG 10163 36 100.0 30 .................................... GATATTCATAAGCATACTATCAATGAGCAT 10229 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 16 36 99.5 33 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : GAAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAAGATATTGAAATTAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGATTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : CGTTTATTCCGTATTTAGCAAAAATCCTAGGTTGTGGTTTGATTAAAGATTAGAAAAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2890-2133 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMX01000153.1 Flavobacterium columnare NBRC 100251 = ATCC 23463 WGS0041_contig_153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2889 36 100.0 30 .................................... AAATGAAAATTTATCTTTTAGATTTAACGT 2823 36 100.0 29 .................................... TTCGGAAAAAGAAAGAGGTGTTCCAGATA 2758 36 100.0 30 .................................... GAAAGAGTTATTACAATGCCTTTAAGAGTT 2692 36 100.0 30 .................................... AAGAAATGCAATTTATGTATTGATATGCTT 2626 36 100.0 29 .................................... TGCTTAACTTATTACCTGTGTATTATATA 2561 36 100.0 29 .................................... AAGAAGAAAGAGAAAAATGGGGTCTTATT 2496 36 100.0 29 .................................... GCGATAGAAAAGGCGGTAAATTAAATTGG 2431 36 100.0 30 .................................... TCCGGTTATTGGTAATATCAAAAAAACTAT 2365 36 100.0 30 .................................... CGAGCAAAATATTGATAATTACGAAACCAG 2299 36 100.0 30 .................................... TTAATTGATTACAGAAATGCTGGGCTTGAA 2233 36 100.0 29 .................................... ATAACAATATAACCTCTTGACTTTAAGTG 2168 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : | # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //