Array 1 120071-119743 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATM01000004.1 Escherichia sp. E2562 c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 120070 28 100.0 32 ............................ ATCTCGCCGTTAAAAATCATTCCCCGCTCTTT 120010 28 100.0 32 ............................ GCCTCGAACGGCGAGACGTCCGTTCCGACGGT 119950 28 100.0 32 ............................ GTGAGCGTAGACCAGCCAAAACGCAGCAGGCC 119890 28 100.0 32 ............................ CAGGTATGAGCCAGCCGACTCAAACCGCGTTG 119830 28 100.0 32 ............................ CGATGCGCGGCGCGGGGCTTGAGGGGGCAAGC 119770 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTCACCCCGCCAGGACGGGTCACATGCGAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTCAGAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCAGTTTGCGTGACGGAGATTATGATCGTATGTGTTCTGTTCGATAGTTTATCAAAAGCTATGTATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTACGACTGTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CACAACACTCCATCCTCCAATATTTATTCCCCGTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAGCAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 135503-134513 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATM01000004.1 Escherichia sp. E2562 c4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135502 28 100.0 32 ............................ CGTGGCCTATGCGTTTTTCTCTCTGTTAATGC 135442 28 100.0 32 ............................ AAGTTGCGCCATCTTCCTGATATCACTTTTGC 135382 28 100.0 33 ............................ GGTATCAAAATTACCGGAGTAATAACAGCTTAA 135321 28 100.0 32 ............................ GAAGCTGATATGGCCGGACTGAAGCAAATCAC 135261 28 100.0 32 ............................ CGCCAGACCGTCAAGCTAAGGCGTCTTTTTGC 135201 28 100.0 32 ............................ TCAGAGAGTAGTGTTTCTCGCCGTATGCTCTC 135141 28 100.0 32 ............................ GAATGCCGCGCTGCGTTTTTCGTCCAACGTGC 135081 28 100.0 32 ............................ CCACTAAAATTCTTCATCATCCCATCAAAATT 135021 28 100.0 32 ............................ GCCAACAACTCTGTGGTTACTACAGGAACTGA 134961 28 100.0 32 ............................ TTACGAACGGGAGTTAGAGTGGGGGTTAACGT 134901 28 100.0 32 ............................ GTTACGCGCTGACGAAATTATTATTTCCCCCG 134841 28 100.0 32 ............................ AGGACGGCAAATTTATTGTGAGGCCGTTACGC 134781 28 100.0 32 ............................ CGTACTCAGACCGAGCTGTGATTTCAGCTCGA 134721 28 100.0 32 ............................ GGCTGGAATCCGTTTTCACTGGAACCGACTAA 134661 28 100.0 32 ............................ AGAAACTGAACCGCCAGAAACTGAACGTCCAG 134601 28 100.0 32 ............................ TCTCAGATTACCGGGACATTGGCTGTTGTCGC 134541 28 92.9 0 ....................T...C... | C [134518] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCTCGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGACTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAAGTTCGGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAATGCTGCTGAAAGGTAAGAATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCCGCAACGTGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCGCAGAAATCAATGCTGTACTAATCCTAGCTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //