Array 1 471-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXET01000138.1 Flavobacterium psychrophilum isolate 19-SE055_S7_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 470 29 100.0 40 ............................. CCGATGTTAAACCAAAACAGCCAAAAAAAGCAAAATTTTC 401 29 96.6 40 ........................T.... CTGATATTAAACCAGAACAGCCTGCAAAAATACCCCTTCT 332 29 96.6 0 ....A........................ | ========== ====== ====== ====== ============================= ======================================== ================== 3 29 97.7 40 AATAGCAGTCACAGAATTAGGAATGGTAA # Left flank : AAACCGCGGCTGCCTGATAAACGGCTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAACATTACCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGACAATTTACTGTTCTTAAACTGCTACAGTCTGCAAAAGCACGCTCTT # Right flank : ATCGATGTTAGACCAGAACATTTTTCAAAAGCAGCATCTCCGATAGATGTAACGGTATTGTTAGGGATTGTAATTGATGTTAAATTAGAACAAAGCGCAAAAGCATCCTTTTCGATAGATCTAACAGAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGTAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGCAGTCACAGAATTAGGAATGGTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 181-682 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXET01000056.1 Flavobacterium psychrophilum isolate 19-SE055_S7_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 181 46 100.0 30 .............................................. CTAAATCTGTTCGTATATCGTCAAATGATA 257 46 100.0 30 .............................................. TGTTGTTTTTGTTATTTGTTATGCAAAACA 333 46 100.0 30 .............................................. AAAAAGATGCTAGGGAAAAAGCTAGAAAAG 409 46 100.0 30 .............................................. CGAGAGCTTATCGATTACGAAGCTAGCCCA 485 46 100.0 30 .............................................. TACAGAACACGAATAAAGATACAACCCTGC 561 46 100.0 30 .............................................. CATCTCATAAATCCGAAGGAACAAACCAAG 637 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 7 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTATTTTAGCTTATAATTACCAACGAGAAAAACTAGCATACGAGATTAGAGATGG # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //