Array 1 122581-123208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAF010000009.1 Dickeya chrysanthemi strain EC16 NODE_9_length_186974_cov_69.131158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 122581 28 100.0 32 ............................ ATATTCGTCAGTCAATTATCGACATCCTGACC 122641 28 100.0 32 ............................ GACAATCTGATAACGGCGCACCTCTCCACCGC 122701 28 100.0 32 ............................ ATCTGATTCCGCCGACGCACTGGTGACGGTTT 122761 28 100.0 32 ............................ ACGGTGATGTAGATCGGATTCGGCGCATCATC 122821 28 100.0 32 ............................ TGACCAGTGCCGAGCAGGAACGCCTGGAGACG 122881 28 100.0 32 ............................ AATTGACCATCGCGCAAGCGGTAACGGATTCG 122941 28 100.0 32 ............................ ATGCTGACGTTTGGGGGCAGGTTGCTGAGTCG 123001 28 100.0 32 ............................ GGGGTGTGGACTATCGGATATGGTTGGACGCA 123061 28 100.0 32 ............................ TCGCCTACTTCAAGAAGCGCATTCATTTCGAT 123121 28 100.0 32 ............................ TTGGAACCGTTAAGTATCAGGAGTTCTGGGTG 123181 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCCATCAGCGCGCAGCGACGTGTAAGGCTTGTAATCGCCGGTGGTACACACTTTCAGCACGCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGCCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTACACGCCTGTCTGACAAAAACGCCACTGTAGCACGCCGTTTCCACCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGACTTAAAAAAAGGGTTTCGCAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : AAGGGTGTCGGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGAAATAGTAGAGATACGCGATTGCCTATCCCGCACGAAACCGCTCACCGCCCCAACATAAATCAGGCCGCAGCAAAATCCTTGCTGTTTGCCAACAGCCCGAAAACACTATTCCGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGATGGCATAACCCGCGCCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAGCCCAGGCTTTTGAAGCGGGTTTCCTGATGCGCACGCTGCTTCGCCTGACGGAATTTCAAATGGGTAATGCTGATCATCGCCCAGTTGATCACCAGTGCAGACACCACCAACGCCATCAACAGTTCAAACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 129185-128197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAF010000009.1 Dickeya chrysanthemi strain EC16 NODE_9_length_186974_cov_69.131158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 129184 28 100.0 32 ............................ TGTGCGCAGCGCAGTGAAAACGCTCATACCGG 129124 28 100.0 32 ............................ TGATCGGCCTGCGACCGCAATCAATGAAATGC 129064 28 100.0 32 ............................ CGGTTGGCGCACATCCTGAAATGATTACTGGA 129004 28 100.0 32 ............................ TGGGAAATGAACTGAGTGAACAGGTTACCCAG 128944 28 100.0 32 ............................ GCCTGGCAGGCGTACGAAGTTCCAGACTGTGC 128884 28 100.0 32 ............................ TATCTCAGCGCCAGCGATGGCGCCTAACGGGC 128824 28 100.0 32 ............................ TCCAGCACGAAAGCTGATTGTGAATTCTAGCT 128764 28 100.0 32 ............................ CGTTACTATTGTCAGATGTCCCGTACCCCAGC 128704 28 100.0 32 ............................ TTCGCTTCGAGCCTGATTTATTGCTGCTGTAA 128644 28 100.0 32 ............................ AGCTCTTCGTCATACACCGGAACATCGCCGAC 128584 28 96.4 32 ...........A................ GCGCGTCTATCCGCGCCGCTGGTCGTAATGGT 128524 28 96.4 32 ...........A................ CGCTACACGATGATGCCATGGATCACGAACTG 128464 28 96.4 32 ...........A................ AAAACGTTCCCAGAAATGACTGTCTATCCATG 128404 28 96.4 32 ...........A................ TATTCAAACACCGGTATTGCTGCTGACCAGAA 128344 28 96.4 32 ...........A................ CAAGGCATCTACGCGAACACGAATGTTTCCAT 128284 28 96.4 31 ............A............... TTACGCGGAGAGCTGGTCGTAGCACCGCCGG 128225 27 78.6 0 A...........AC.........-..CG | GG [128202] ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.5 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGCGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGTTGCAGGAGAAACCAGTCGCCGGGGTGTTCTCCAGCTACGGCTTAAGCGCCATCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTTCCGGGAAAACGGCTATTTCTCTTTAACAATCAGGTGATAAGCGATTATTCGCTACA # Right flank : GGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAGCGACACGGTTTATCCCGCACGAAATGAACCACCGCCCTCTCATACATTCGACAAACGTATTTGTCAGCCATACCCCGGCTGTGTGTCAACAGCCTTATTCCCGCGCAGGAATAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 137889-139418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAF010000009.1 Dickeya chrysanthemi strain EC16 NODE_9_length_186974_cov_69.131158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137889 28 100.0 32 ............................ GGCGCGCAGCGTATGGCGTGCCATCCGGGTTT 137949 28 100.0 32 ............................ GACATTGAGCGTTATCTGTCTATCGACATCAA 138009 28 100.0 32 ............................ AGTGCGGGTTTCTTTTTGCCGGAGATTTTATG 138069 28 100.0 33 ............................ CCCAGATAACAAGGTGACAACCGATGATCCTCT 138130 28 100.0 32 ............................ GAGTATAAAAACCTCATTGATATCATCACGCA 138190 28 100.0 32 ............................ AGCAAGTATGCACGTCACAAACTGGCGAATGA 138250 28 100.0 32 ............................ GGTGAAACAGTCAGCGCCTTGTAATCGAGATC 138310 28 100.0 32 ............................ AGCGAGAGACTCTGCGGGCCGAAACACTACAA 138370 28 100.0 32 ............................ TGAACAAACGCGCACCCTTCAAGGCACTGAAT 138430 28 100.0 33 ............................ AAAATCTTTCGGGCAGACAGAAAAACTTTTGCC 138491 28 100.0 32 ............................ TGGGGTAATTCACCGAGATTGTATGACATTTA 138551 28 100.0 32 ............................ CCGCACTGCCTGTAGTGCCGGATGGATTGCAC 138611 28 100.0 32 ............................ GGAGCGTTGTTCCTGCTGTCAGATTGGCTATT 138671 28 100.0 32 ............................ AGCATTGAGCCGACATCCGTCGACGATAACGG 138731 28 100.0 32 ............................ ATGCCGTTGTCCAGCACGATAACGGCTTCACC 138791 28 100.0 32 ............................ AGACTCGGCGGGAACCCGCTCGACCCATGGCA 138851 28 100.0 32 ............................ TGAGTCAGTTTGGCGGCGGTTAAGGCGGCGGC 138911 28 100.0 32 ............................ GAAGTCACTGGAGTCTTTGCGGGTACCCGAAG 138971 28 100.0 32 ............................ CACTCGCGGCACTGGTAGGCTGGGTATTAAGG 139031 28 100.0 32 ............................ TGTCTCTAAAACTGTCACTAACCTTGACATGT 139091 28 100.0 32 ............................ GTCAATCCACCCCTGATAATTAGGCAGTAGTT 139151 28 100.0 32 ............................ GGTCGAGATTACCATGAGCACCAATATCTTAT 139211 28 100.0 32 ............................ TCTGAGTCTTGTTTATAATGACTATTCTTCTG 139271 28 100.0 32 ............................ ACCCTGGCCAACCCGATGAAACCGCAGTGGAA 139331 28 100.0 32 ............................ ACCATATCCAGCTGTGGTTGCATCGCGGAACT 139391 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGGGAAATACGGATACCCAAAATAATTCGAGTTGCAGGAAGGCGGCAACGCAGCGAATCCCCGGGAGCTTACCCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACACACCTGCAACTTGAAGTATGACGGGTATAATCTACTGGAAAGTAACGAGAATTAACCTATCACAGCCACAACGGGAAAGTGAATGGCGCCGAAAAGACTTTTCTTATTTTTATACCCTTTTTTTCAGCCGCTATTTTCGGCACTGAAAAATCAATCAGTTACCGACAGCCGAAAAAAAAGGGTCTGACGACGAAAATCGACAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACGGGCTACA # Right flank : AAAGCAGATGCTCAACACGCCAGTGTGTTGCCGGTAACGCGAATTATTTAGGTTATGCCGACTGATTTAAATTAAAACAGGGTTTCTTTTTATTACTTCGACCACAAATTCTACCTCCTTGGTTGACACTATTTTAAACCTTGACTACTACTTAACTATTAAGGCTAGATTGACGTCCACCCTTAACGGAAAAAGAAATGAATTGCACATTTTGTGCAACCAGAAATGGTCATCACCGGTAGCTATAACTAAATGCGAATAAAAAAACTGATACAAATAAATCTTTTGCATTTAATCCTATTCATTTCTCTTGCCAGTATGTTTGTTACGCTATTGAATAGCTATTTAACTTTTTATCACGTTCAAAAAAAACTACTGTTTGAACAAGCCACTAAAGTCAATGCCAGTTATTCAGCCAAACTCGCCATGACTGTGGATAATTTTTTTTCTGTTTCAGAAGAGCAATTATCTTATAGCGCCAGGTTGATCGTCAGTCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28730-27511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAF010000014.1 Dickeya chrysanthemi strain EC16 NODE_14_length_146191_cov_70.827149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 28729 32 96.9 34 A............................... TTTGAATATCGGAGATATCCAGCGCTGGATCGAC 28663 32 100.0 34 ................................ GCTATTGTTGAAGGTCGCCTGAACCTGACTGTCA 28597 32 100.0 33 ................................ AAGTGTCATAATTGCCAACAGATGAATGGCTGG 28532 32 100.0 32 ................................ TCAAAGGCGGTATGGTAGTCCACCCATTTACC 28468 32 100.0 35 ................................ AAACTCCAATACAACTGTGTGTACGGATACCGAAT 28401 32 100.0 33 ................................ ACGAAAGTCAGCTGCTCCCAGCGCTGTATTAAG 28336 32 100.0 33 ................................ ATTTAGAAGCAAAGCAGCTGGATTGCCTGATTT 28271 32 100.0 34 ................................ TGGTCCTTACCGGCATCAGCCGGCTTCTCTGGTT 28205 32 100.0 34 ................................ TGTCCAAGCGCGGTTGTCCCGCTCGCACGGGTGG 28139 32 96.9 35 ............A................... CGGTCTGTTTGATGATCAGCGGGCGATAACGAGTA 28072 32 100.0 34 ................................ ATTGAACGCGTCCGTGAAAAAGACAAGTTGCAGC 28006 32 100.0 34 ................................ TTGTGTAAACCTCTTGATTTGGGCACTTTTGATG 27940 32 100.0 34 ................................ TTTTTCAACGGCAGCGCCCGGCGCATTGAGTTCA 27874 32 100.0 34 ................................ GAGGTAAATAGCATAATAGACCCATTTGCAGGTA 27808 32 100.0 34 ................................ ACCAGCACCTGCAGGATCACGCGTAACTTTTGGC 27742 32 100.0 33 ................................ AGCGTAATTGCTGCGCCCTCGCTTGTATAAATC 27677 32 100.0 35 ................................ TTTTCGCGCGTCAGCAGATGCAGCGTTGAACCCAG 27610 32 96.9 37 .............T.................. ATGACGTTGTCAGACTCTGGAGATGTGAATATCAGCC 27541 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 98.5 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AGGCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACCCTGATAATCAGCAGAACACGCCGTCTAACGGTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACATCAGCGGCGGTCTGCGTTGTCGGCTCATAACCTGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTTGTCGATACTGGCCGCGAGCCCGTAAGTGGTAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGGCATCGCTCCGGCGCAGCGCTGCAAGTGTTGAAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGGCATCGCTCCGGCGCAGCGCTGCAAGTGTTGAAGTCGCGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCGGGCGCGTGGATTGAAACATTAATTCAGGGTTGTTGATTGGCAAATTGCACAT # Right flank : GATATGCTGATTCGTCGGTTAACGCGGCGACGGCGGTTCCGGTTCGAACAGCGGCAACGGTTTGCCGATGATATAACGGCGGCGCAAATGGGCGGATAACGCGTCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCATAACCGCATGTTCTCGGCATACACCAGCCCGATGCCGCCCGCGCCGACAAACCCCAGCACCGCGGCTGAGCGCACGTTCGACTCCATTTGGTACAGGCTGAGCGCCAGAAAGGTCGGGAATGATTGGGTGAAGATGCCGAAACGGTGTTTTTGCAGGCTGTTGGCGCCGACGGCGCTCAGCCCCCGGCTGGGTGAGCGTTCCACCGCTTCGTGCCCTTCGGCGTATAGCTTGCCGAGCAGGCCGGCATCCTGCATTAGAATCGCCAGCGCGCCGGACAACGGCCCCATACCCACCGCCCGCACGAAGATTAACCCCCATATCGCCATGTCGATGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 29225-28931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAF010000014.1 Dickeya chrysanthemi strain EC16 NODE_14_length_146191_cov_70.827149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 29224 32 100.0 33 ................................ CCTGATAATCAGCAGAACACGCCGTCTAACGGT 29159 32 100.0 34 ................................ ATCAGCGGCGGTCTGCGTTGTCGGCTCATAACCT 29093 32 100.0 33 ................................ TTGTCGATACTGGCCGCGAGCCCGTAAGTGGTA 29028 32 100.0 34 ................................ GGCATCGCTCCGGCGCAGCGCTGCAAGTGTTGAA 28962 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGATACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAAGACGCCAACGGCCCCCGTCGCCTACGGCAACTGGCCAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTATTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGTGATACGCTTATCGTGTAACACTGCGCCAACCTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAATCTTATGCGGTTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCCGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GGCATCGCTCCGGCGCAGCGCTGCAAGTGTTGAAGTCGCGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCGGGCGCGTGGATTGAAACATTAATTCAGGGTTGTTGATTGGCAAATTGCACATATCGCGCCCCACGCGGGCGCGTGGATTGAAACTTTGAATATCGGAGATATCCAGCGCTGGATCGACGTCGCGCCCCACGCGGGCGCGTGGATTGAAACGCTATTGTTGAAGGTCGCCTGAACCTGACTGTCAGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAGTGTCATAATTGCCAACAGATGAATGGCTGGGTCGCGCCCCACGCGGGCGCGTGGATTGAAACTCAAAGGCGGTATGGTAGTCCACCCATTTACCGTCGCGCCCCACGCGGGCGCGTGGATTGAAACAAACTC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //