Array 1 397407-398959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGZ01000001.1 Gardnerella vaginalis strain UMB0768 .16933_8_63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 397407 28 100.0 33 ............................ CATACTCAAAAAACACATCATTTAATGTGCAAA 397468 28 100.0 33 ............................ CTTATGGAACAAGCCATCACGCATCTTACTGCT 397529 28 100.0 33 ............................ TGTCGGTTGCGTCTAGAAGTTTAGAGGCTGCGA 397590 28 100.0 33 ............................ TTGATATTCTTTAAACTCTTTTAATTTTGCAAT 397651 28 100.0 33 ............................ CCGTGCGAGTGTTATTATCTTTTGCCGTATTTT 397712 28 100.0 33 ............................ CAATCCGCGAGCGCAATTTACCTGATGGGTATT 397773 28 100.0 33 ............................ TAATTATGACAGGTGACTATTTTCTACGATACG 397834 28 100.0 33 ............................ CCTTACCATCGCTATCCGTCCAAGGTGACCAAG 397895 28 100.0 33 ............................ CGTACTGGATTACTTGCGCCCAGTCGCCCGAGT 397956 28 100.0 33 ............................ CCTGCGAAGAGTCAAACACATACGCCAAACCAG 398017 28 100.0 33 ............................ TCTGTGCTATACCTATTTTTTGTATCCACTTAT 398078 28 100.0 33 ............................ TTAGAGCATGAAAATGGAGCTAGTAATGAACTT 398139 28 100.0 33 ............................ TATTTTCGTTGGCTCTAATAAAGACTTTGTATA 398200 28 100.0 33 ............................ TTCTCTGTTCAGCGCTGTACACGTTCCAATAGA 398261 28 100.0 33 ............................ CGAGCAAACATTTTTCATTGCTTGCATAGCAAA 398322 28 100.0 33 ............................ TATCAATTTAAGAGCGAAAAGAAAAGTTTTTAT 398383 28 100.0 33 ............................ CCGATGCGCAATGAGTGATTATGATTTTAGAGC 398444 28 100.0 33 ............................ CACTCTTGTAGATGCTGTGCTTGAGCGGCTTAT 398505 28 100.0 33 ............................ GCGTCGTGCCGCGGCGTGCGATAGTGTCATCGA 398566 28 100.0 33 ............................ TATTTTCCTTATTTTGAGCTAATAATAAATTTA 398627 28 100.0 33 ............................ TCGTCATCACTCCATCCTTAAGCACAGGCTCAA 398688 28 100.0 33 ............................ CTCAATGGATTGCTGCCAGATTAGAGCAGGCTA 398749 28 100.0 33 ............................ CCGTGCCTATATGTGCGTGGCAGTAGATTTTTA 398810 28 100.0 33 ............................ CTTATCGCTATTTTGCAGAAGAAAGGTACAAAT 398871 28 100.0 33 ............................ TCGTGGAGTTTTACGAATCCAGCTGGCGACTTG 398932 28 96.4 0 ..C......................... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 33 GTATTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGCCGCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //