Array 1 1044890-1044708 **** Predicted by CRISPRDetect 2.4 *** >NC_008344.1 Nitrosomonas eutropha C91, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1044889 37 100.0 34 ..................................... GCATTGCCAATTAATTTTTTTTTATTTACAAATT 1044818 37 100.0 37 ..................................... CCGACAATGATTGTGTTGGCGGCAAGCGTACTTACAC 1044744 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 36 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : GGTTATCTCCCTTTCCTGACCAGATAGTGATGCTGATTATTGTTACCTACGACGTTTCAACAGAAACCAAAGCTGGCCGCAAACGATTGCGACGAATCGCAAAAGTTTGCGAAAGCATCGGGCAGCGTGTGCAAAAATCCGTATTTGAATGCCGTATTGATTTGATGCAATATGAAGAACTGGAACGCCGCCTGCTGGCAGAAATAGACGAGCAGGAAGATAATCTGCGACTGTATCGGTTAACCGAACCAATTAAACTCCACGTAAAAGAATATGGAAATTTCAAGGCAGTTGATTTTGAAGGGCCACTCACCATCTGATACGCGCGAACCTGTAGCATCGGCCAAATACCGATCGGTTCGCGCCACATCTAACTACATGATACAGAATAGAAAAATAATTTACCCCTCCTTTTATCTGTTACATGCAGTCAAGGAAAATCTCATGTTCGCGCAAACTGCTCGAATTTTGATGATGTATCAAGAAGTTGTAACTGTACT # Right flank : ATGAGAATGATCCGGTGGAGCGCGCCGGGATTGAGTAGCGCCCAGTCGGGTGACCGGGCGCTACTCAATCCGTTGGAAGTGACTATACAACCTGGCGCGAGGTCAGCAGTAGCCCAGTTAAAAACCGCTTTGTGCGTAAAACCAGAGCTTTGATAGGCTTGTTTGGGTCACTATGCGCCTTATCATAGAAAAATCGGGCTTGGCTGAACCATCTTTCTAATCAGGAAAAATTATGCCACACTCATTCTTCTCCAAATTAGTGGATTCTATCTTTCACCAAAGTTATTTTTCATGCTAAAGTAGTAATCAATTACTTACTTTAAAGGTGTAGGCAGTGAATGAGCGTCCTCAATACTTGTCCGCTGAAGAGCGACGAGCAGCCACAGTGCAAGCAGTGCTCGATTTGGCTGCCGAGCAGAACCCGGCCGAGATCACAACCACAGCCATTGCTGACCGGATGGGTTTGACGCAGGGCGCGTTGTTTCGTCATTTCCCCACCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.10,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 2 2342638-2341826 **** Predicted by CRISPRDetect 2.4 *** >NC_008344.1 Nitrosomonas eutropha C91, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2342637 36 100.0 34 .................................... CTAAATGTAGGGCTAATATGAGAACAGCAGCAGC 2342567 36 100.0 36 .................................... GTCACGAGATTTGACGTACTTTTCACCTATCTCGTA 2342495 36 100.0 35 .................................... AGTCCTAGTTTCTTTACTTTGTTATTTATCGCATC 2342424 36 100.0 35 .................................... CACCTACAAATGCGTCATTCAAACATTCATATTTA 2342353 36 100.0 32 .................................... CCAATACCATTCTGATGCCGGCGCTCATATTC 2342285 36 100.0 35 .................................... ACAAGAAAAAAGAAGTGTTCAACATTAGAGATATT 2342214 36 100.0 35 .................................... GTTCACATCCAAACACTAATGCATTTGGATGAGAC 2342143 36 100.0 34 .................................... CGGATAGACTTCGACGAGCAAACACCTTTCCATT 2342073 36 100.0 35 .................................... GTCGCTGGCCTGTATGGGGTCGATCCGGTTATTTC 2342002 36 100.0 34 .................................... CGGATAGACTTCGACGAGCAAACACCTTTCCATT 2341932 36 100.0 35 .................................... CTAAGGTGATTTCCTCACCCATATCATCTTCCATA 2341861 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.8 35 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : TTGGTTACATACGCCATATCCTTCGCTGCTTTTTCAGTAATCTGATTAACGCGACAAGTTGGTGCCAGCTCGAACATATAAAAATTACTCCGGTAAGCAGAACGGAGTGCATTGTGTATTAGCTGCTGGCCGACAAGCTGACGGCAAGCTTGCCGGTCAGAGTACGTGTTGCCTTGATCAGAATGGAGATATACGATTTCATTTCGGTCGAAGACCGGTCACGCGAATATGGATGAAAAATGGCAATACTTTTACAAACTGAAAGGACAGAAAAAGCAGTAATATCTGCCTGTTCCCTTGGAAATTGCTGGTTGTTGGTGGCTGAAAACACTGCAGATGACAGATTGTGGCCCAGGGAAAAATAGCCACCAGCTGCCTGGTAAAATGAAGCGTTTTTGAAAGAAATTATTGTTTGGAGGAGACATCTTGCTGCATCCCGCTATTTTTCCTCTTTGCCCCGTGCAGTGGATTGATTATAAAGAGAAAAATGACAGCAATCA # Right flank : GAGTTGGTATGTAATTTCCCTGCCATCACGAGGGACGCAGTGATGTGGTAATCCAGTGTTGTCGTTACCACTTCGCTGGATTGCTTCACCCCTTGGATGTTCGCAAAGACGGCAAAGTCAGCTCACAAGCAGCGGCTCCTTAATGGCGCACCTTGCTTGTATAGCATGCCTGCACCAGCCTGGTGCGTCCGGCACCCCAGCCACTGATGGCTGCTCCCAGACACAGAGCGGTAAATAACCAGCCGCTGGCGGCATACCCGCCAGTGAGACTGTGCAGCATGCCAATCAGCAAGGGGCCCAGTGCCGCCAGCGTATAACCAACACTCTGCGCCATACTGGATAAGTGTGTTGCGATGTGAGCGTCGGGAGAACGCAGGACGATTATGGTCAGTGCGAGTGCAAACAAGCCACCCTGCCCGATTCCTTGCAAAATGCCGAATTCCCAGACTAATTCAATTGGGCCGAACAACATTCCCAGAAAGCCGATTGCAGCAGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 2357406-2358142 **** Predicted by CRISPRDetect 2.4 *** >NC_008344.1 Nitrosomonas eutropha C91, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2357406 36 100.0 34 .................................... AACTAAGAACATTGACACCAGCATCTGACAGGTC 2357476 36 100.0 35 .................................... CGTATGATGAGTAACCTTCTCCGCCTTCATTTACC 2357547 36 100.0 33 .................................... CTTCACCTGATTGGGGATTGGCGTACGCGTATG 2357616 36 100.0 35 .................................... CGTGAGGAAATCTTCCAATTCTTCTTGGTTGCAGG 2357687 36 100.0 34 .................................... TGATCTCGTGAGCGTGCTTGACGGTGGCGGCAAA 2357757 36 100.0 34 .................................... GTTTGGATCTTCCGCTTGCGCCCATTTGTACACG 2357827 36 100.0 33 .................................... GCTGGCCATCCTTGATTTTAAACTTTCCAAACA 2357896 36 100.0 36 .................................... CGCTGTCTTAAACAGCGTATTAATATAACTACTATA 2357968 36 100.0 34 .................................... GAACGTTTGTATCATTTGGTATTGGGTCGAGTGA 2358038 36 100.0 33 .................................... TTGTTTTGAGCCGGGTATATCGTGTACATAATT 2358107 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ==================================== ================== 11 36 99.7 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCCGCGACGGCTGGCGCGCTTGCATCGCTATCTGGTAAAACGTGCCGTACCGTTGCAATATTCTGTATTTTTGTTTAGCGGAGATGATCGCCAGCTTGAACACTGCATGCAGGGGGCGATCGAACTGATTGATGAAAAAGTGGATGATTTGCGTGTTTATCCGTTGCCGAGTCGTGGGCTGAAGGCTCGCATCGGTCAACCCGCCTTGCCAGAAGGCATCCAATGGAGTGGATTGCCCACTGCGTGGTAGCGTACAGCTTTTCTGAAGCGATCAATCGTCTGAAAAGAAAGCCAGATCAGTTACAGTTCGCTCTTGTAAACATGGCGGGATCGTTCAAAATATCAGAAAATAAACCAACCTCAGATATTTAAACTTTACCGATTATTGTATTAATGGAACAAATAACCAACTGACAGGAGACATCTTGCAGCTTCTTACCATTTTTCCTCTACACCCTTTTCAAGGTATTGATTGTAAAGAGAAAAATGACAGTAGTCA # Right flank : TTGGCATACAAGCCGGTATTTGTTTTCCTCGTCATCACGAAGCCGTCAGGCTATGGTGATCCACTACCACCGCTACCACTTCACTGGATTGCTTCACTCCTTGGGTGTGTGCAAAAGCAAGGGCAGTGAACTGGGTTGCTACGTCAGCCTGGCCACTACCTGCTTTCCGCTGCATTATGCTTGTGGGCGCAGTCGCAGTTAAAGGCTGGTTTGCTCACAATGGCACGTCAGCTCACCAAGACAAGACGCTGTATGCTTGGCTTCGCACGGTTCATTCCCCATACCCCCCCTGCACAACTGTAAAATTACAGAATTACGCAGAAGTCTTTTTGTAAAAAAGACTGTTATCTTGGACAAGGAGTTTTCGTAATGGATAAAGCAATATATAAAGAAAGGTTTCCGGATTTCTTTGCTGATGCGCCGGCTGTAACCCTACGCGATCCGCTGGCACAGTTTCTCGGCACAGCACGTGACGGGATCATGGAATACCGGTATGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //