Array 1 161752-163301 **** Predicted by CRISPRDetect 2.4 ***
>NZ_PYJU01000054.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 100ev NODE_8_length_198955_cov_10.0261, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
161752 29 100.0 32 ............................. CCGGTTAATTTGTTGTAGCCGTCGCGGGGCGG
161813 29 100.0 32 ............................. CCCGTGTGCCCTTTCCCCTTGCCGTAGTCCAA
161874 29 100.0 30 ............................. ACGGTACACACCATCCTCGTTGATGATGGT
161933 29 93.1 32 CA........................... GCCCCGATAGCGTCAACTATCAGGGCCTGCAA
161994 29 100.0 32 ............................. TGGGTGCGTCTGCGTGATTTTGCAGTGTACCC
162055 29 96.6 32 ............................T ATACGGTGCCGCCTTGCTGTGAATCCACGGGC
162116 29 100.0 32 ............................. TTTATACCGCCCTCGCCGTCTGCCGGAATATT
162177 29 100.0 32 ............................. GGTGCAGGGGCGGCGTATTTGCGCCTGCACCT
162238 29 100.0 32 ............................. TGACAACGGTGACAATAAAACAATCGCCAGTA
162299 29 100.0 32 ............................. GTTCTGTGTTCGTCTACGATTCAGAAAAATGG
162360 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTCCCATAAATCTG
162421 29 100.0 32 ............................. TGATCGTGATGAGTTGCCATGCGCGCAGGTTA
162482 29 100.0 32 ............................. CGTCCAGTACCCGTCCTCGTCGCGTTCTACAA
162543 29 100.0 32 ............................. GCACTCCAGCGCCACGGAATACAGGTCGGCCA
162604 29 100.0 32 ............................. AAAAAACCAATAGCACACGTAGCATTAGTAAA
162665 29 100.0 32 ............................. TAGCCAACGACTGATAGATGATCTCATAGAAA
162726 29 100.0 32 ............................. TGAGGGGGTTATGACAACCACCATAGTGATAG
162787 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC
162848 29 100.0 32 ............................. CGCGAACGCGCGCAGCAGCTGCCGCAGGCTGT
162909 29 100.0 32 ............................. GTCGCGTGAATCCGGCTAATCTGGATGATCCG
162970 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG
163031 29 96.6 31 ...........................T. AAAAAATGCGATCGGTACTCAACCCGGCCAC
163091 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC
163152 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT
163213 29 96.6 32 ...........................A. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
163274 28 86.2 0 ...............A.AA....-..... |
========== ====== ====== ====== ============================= ================================ ==================
26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTTTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.20
# Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 179424-181161 **** Predicted by CRISPRDetect 2.4 ***
>NZ_PYJU01000054.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 100ev NODE_8_length_198955_cov_10.0261, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
179424 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA
179485 29 100.0 32 ............................. GTCGATACAAACACAGGGTGTTTTAAAATTTG
179546 29 100.0 32 ............................. CTTGCAAAACTTCGAGAAGGGGACGTGGTTTT
179607 29 100.0 32 ............................. CTACTGCAGGGATGTTGGGATGTACGGAAAAA
179668 29 100.0 32 ............................. CCGTTGATTAATTTCTCAGTGTTGATGGAGGA
179729 29 100.0 32 ............................. GCGTCGGCCATTTCTCCCAGCTCCGGCACGCC
179790 29 100.0 32 ............................. AGGATTTATCGATATCTGCCAGCGGCGCAAAA
179851 29 100.0 32 ............................. GGGCTGCACCAGTTCCTGCGCGATAAAACGGA
179912 29 100.0 32 ............................. CTCGTCCTTTTTGATTGAGTTCTCGTCATATC
179973 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT
180034 29 100.0 32 ............................. AAAAGCTTCGACAAATCCAGCTAAAACACTAC
180095 29 100.0 32 ............................. TAGAATGTGCAACTACGCAAAATAGAAATGAC
180156 29 100.0 32 ............................. GCATTTGTCGCAGTAATATTCCTCACGACGAT
180217 29 100.0 32 ............................. CCCGCGAGGGATTTTTTTATGCCCGGAGTAAA
180278 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT
180339 29 100.0 32 ............................. TTTACGGTATTCGTTGTCAGCAATCCTGATCA
180400 29 100.0 32 ............................. CAGCTGCTTCGCACCTGCCGGGCTACGCCGAA
180461 29 100.0 32 ............................. CTTTCTTTAACGTCCAGTCATTCCTTGAGAAC
180522 29 100.0 32 ............................. CGTCCTGGTACGTCGGCGTGAACCCTGCCGCA
180583 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCGTCTGTGCCG
180644 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC
180705 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC
180766 29 100.0 32 ............................. TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC
180827 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC
180888 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG
180949 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA
181010 29 100.0 32 ............................. GTTACAGTATCATGTAAAACTGTATAAAAACA
181071 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
181132 29 96.6 0 A............................ | A [181158]
========== ====== ====== ====== ============================= ================================ ==================
29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//