Array 1 49530-48376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFAY010000011.1 Haladaptatus sp. DYF46 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 49529 30 100.0 36 .............................. AGATATTTTGAGAATGTCCCGACCATCGTTGATGGC 49463 30 100.0 35 .............................. CCTCTTGCCCGACTTCGACGAGCATCCCGACTCTA 49398 30 100.0 38 .............................. TTGATCTCCGGAAGGAGCAGGTGCTCAAGTTCGACACC 49330 30 100.0 35 .............................. GTGTTTATCGATACCGGCGACGAATACGACCAACG 49265 30 96.7 35 .................A............ GTCGCTAAGGTGACTCCTTTCGTCCGAACCCACGT 49200 30 100.0 36 .............................. CCCAGGTTCTTGAACGCCGTCACGAGCTCGAAGGAC 49134 30 100.0 36 .............................. TACCGTCCCGGAGGGTGGCAGGATGGCGATGAGCGA 49068 30 100.0 34 .............................. ATTGACAAGAATGACCTTGTCGAAGAGAACATCG 49004 30 100.0 36 .............................. GGCGGCTATGTCCTTGAGGTGCTTCCAGCAGCATTA 48938 30 96.7 37 ................A............. TGGATGAAACGACTCGGGTTTAGTCAGACGAAAGGCG 48871 30 96.7 36 ................A............. ACCGACGGGCGAATGAACTCCGGCCGGGTCTACGCT 48805 30 96.7 38 ................A............. TTCGATAACGACACCATTCCGAGATTCGTCATCAAGGT 48737 30 96.7 36 ................A............. CATGTTAGTCGTCCTCCTCGTAGTCGATGTTGACGC 48671 30 96.7 36 ................A............. GGGAACCCTGTGGCCCGGAACATGACCATCCGCGCA 48605 30 96.7 37 ................A............. ACCCCCTGATGGAGTTGTGACCCCGTCATCGTCAGTT 48538 30 96.7 36 ................A............. ATCGTGGACGGCATCTGCTCGTGCTCCTCGGTGACC 48472 30 93.3 37 ................T..C.......... TCGTTCATCGTTGATGGGAAGTACACATACGAGAAGG 48405 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.0 36 GTTACAGACGAACCGTGGTAGGGTTGAAGC # Left flank : CTGAGTCGAAACTCACCCCGATGCCGAATACGTCGTATTCGATGGAGCGAACTCCTGCCTATATGGAACAGGATGGAAACCATCGACGGACGACTGGGTTTGTCTCGTATGGGTACGCATCTACTGCCGAGCCGATTCCTGTCCAAGGAGTTTCTGCTACTGTAGTTGATGGGCGTACCGTCTGCTTTATTTAAGTGATCAGTTAGAGAGAAGACCTCCAACTCCGGATTTCTGTCTTCGAAGACAACATGATCGAAGGGTCTCGAATCAGTTCGAAGCAAGACGCGTAGCGCATTTGAACCCGACGAGTAGTGATCGTTTACCGAATGAGTTCTGAAAAATACATTGATCGAGAGCTCAGTGGTGATGGCTCCATGATGACGCTCGCTTTGTTTAACTCAACCATCGACCCCCTGGGGGGTTGTGGGCTATTGCGGGTCGACGGAAACGATCAAGTGTGAACAGGCAGAAGAACCAGTGAGTGTCCATTATTGGGCATG # Right flank : TGTCACATAGCGAAATCCGAAGAGACTTACGGCAGGGGTGACCTCCTCGTGGTCTTGTTCTCGAGAATAGCAAACGCATAGCAGCTCAGTTTGATATTCTCCGGAAAGAAAGAAAGAACGGTATTGCGACCAGCAGAAACCGCTGATAATGACTCGCGAGCAGTAACGACTCTCACCCTGGTCGATTTACTAGCTGGCTGCGCTCATCCCAATCATCAGTATTATACTCCGTTTCTTGTGCCCACGACGGACGAATACCTGTCCACTGTTTCGTATCTTCTGGTTGTGGTGTGAACGACCAGGTGGAACTCCGGGATTTCTCGCTTTCAGATACCATTTTCCAACCCAAAATTTTCCGATGGATACGGGGATGGAATCAGCAGGATTCGAGGGTCTCGCGGCGACTCTCGTAGATTCTTATTATGAGATACGCACAGATTGATTCGGGGCTCCCGGGTGTGTTCCACTTCCGCTTACAATCTTAAGTGGAAGTGGATGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTGGTAGGGTTGAAGC # Alternate repeat : GTTACAGACGAACCGTAGTAGGGTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 58355-58976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFAY010000011.1 Haladaptatus sp. DYF46 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 58355 30 100.0 38 .............................. ATATGGTGCGACGAGGTGGCTCACTACGAGCACACCGA 58423 30 100.0 36 .............................. ACGCGGCCTTAGTGCTTCCGGTCGTACAGCCTCCGA 58489 30 100.0 36 .............................. TTCAGCCCGCTTTTCCAGTTCTTCTTTGTCAAGTTC 58555 30 100.0 36 .............................. GACCTGATTGCCGGTGTCCGGATCAGAACCCCACAG 58621 30 100.0 35 .............................. ATCATGATCATCTCGATGGTGATGGCGATAAAATC 58686 30 100.0 34 .............................. GACAGTAGCGGAATCTACGAAATCGAGTACAACA 58750 30 100.0 38 .............................. AATCCATTCATCTCCATTATCGTAATACAATGCACCTC 58818 30 100.0 36 .............................. TATCGCACCGAAGACTCTATCGACGATGTTCCGCAC 58884 30 93.3 33 ......................A......A ACCCGCAAATCACACGCTCGAACCCCAAGAACT 58947 30 76.7 0 ...........CT...CCCT.A........ | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 97.0 36 GTTACAGACGAACCGTAGTAGGGTTGAAGC # Left flank : TGTCCACAAGCGAGAGCGGTCGAAAGATCGAGACGACAAACTCGCGAAGAAAGTCGATCTCGCTGCTGGAGAGGATCTTCGACACGCAAGTTTGATTCGGCAAGACTATGAAACGATAGAAATTCTGATCCCATCTGAGGTAGAACAAGCGTATCTGAATCGGTATCACGAACTCAAAGAGCAACGAGAGTTTGAGAAAGCAGATGCCGTATTTTCTGCACTTAAGCAAGCTCTTGTGACGATCCCTGTAACAAAGCGGACGCAGCCGATTCTCGATCGTCTTTCGTTTGAAGAAGAGAGGACATTCCATGTACTCTGTTCAGCAGACGCATACACGCTCATCCACGGGCTCGGGATCATGCCCACTGCACTCGGTGAGTAATATCCAATTGGGTGGATGTTCCCGTCGACCCCCGGGGGTTTGGAGGTTATTGCGGGTCGACGGAAACACCCAAGTGTAAACGGCAAGAAGCAGTACTGTGTGCCCACTATTGGGTATG # Right flank : CGAGAAACAGCAACCCATCTCGGGACACCACGAAGGTATTCCATCCGTGTTGTGTCTGGCTCCTCCACCTCTTCTGCAACGAATGCAAGGACATCCTCAGCGCGACGAAGCGTGATCTGACTCCATATATCGAAATAGGATTTACTCGTGTTTTCAGTGGAAATGGTGGGGTCAAGTTACTGGATATCATTCGATGGGAAGTTCAGCAATCTACCGTCCGAGGAAGCTTCTTTTTTCATGTTTCTATATAAACGTGCAACCAAAATAGCCACCAACCCGTGAAACGCCCGAAATCAGCTGATCCAACATCTCGATAGCGGCGTCCCCAATCTCTATATTGCACGAAAACCATGACTAACACGCAATGAGGACGGAACGGAACAAAGACGGGACGTTCAACGTTTGGCTCAGTCGGGAGGAATACCGCGCGATCCCCCGCGCCGCAGACTCGTTCGAACACGAGATCGCCATCCGCTTGATGGGCGACTGCGGGCTTCGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTAGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //