Array 1 115-2482 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPKI01000023.1 Halomonas sp. DQ26W DQ-26W_scaffold23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115 27 85.7 32 A.A...-A.................... ATGTCCAGCTTGCCGTACACCCTGCACACCAA 174 28 100.0 33 ............................ TCACCACAGTGTCACCAAAATCATGGATAACCA 235 28 100.0 32 ............................ TCCACATAATGGCCCCAACCAGCGCAGAACGG 295 28 100.0 32 ............................ TTGATAGCGGGCATGGCGCTGCGGGAGAGCTT 355 28 100.0 32 ............................ AGGGCAAGCGCTGTGCGGTGTTCTGTGTGAGC 415 28 100.0 32 ............................ CAGGAGCCACCCCATGGCACGCAGCTATGTAA 475 28 100.0 32 ............................ ATGATGCTGGCATAGAGATGGAGGATGCGAGA 535 28 100.0 32 ............................ GCGATGGACGCGGTGGTAGATGGTGGTCATTG 595 28 100.0 32 ............................ AACCAGTTGATCACCATGCCGGTCGCCATCAG 655 28 100.0 32 ............................ ATGACAGCGCGGATGAGGCGGGCGCATCGCTG 715 28 100.0 32 ............................ AGGGGCTAGACGATGCGTAAGTGGTTCGCCAT 775 28 100.0 32 ............................ AGGCCAGCAAGCCGGCTGCCGACCACCCGTGG 835 28 100.0 32 ............................ TGCACAATATGCGCATGAGTGGGAGGTCGTTA 895 28 100.0 32 ............................ AGCACGCCGTGCGCGCTGACCCCGCTGGGGCT 955 28 100.0 32 ............................ GTTCGCGGCTAGCGGCAGGCAGGTCGCTTGAA 1015 28 100.0 32 ............................ GCCTATGTCGCGCGAACAGTGCGGAAGGATGA 1075 28 100.0 32 ............................ TGCCGGTACGCAAGAAGCGGAGGGCAGAGACA 1135 28 100.0 32 ............................ TACGACCTGGGCGCCAAGCCCGAACCATCCGA 1195 28 100.0 32 ............................ AGCTCCACAACCCGCTCCGCCAGCATATCTCT 1255 28 100.0 32 ............................ ACGACACCAGCCACGTCGATGCGCTGATGACC 1315 28 100.0 32 ............................ TACGACCTGGGCGCCAAGCCCGAACCATCCGA 1375 28 100.0 32 ............................ GCCACCCTGCCGTAGCAGGTTGACCATCTCAG 1435 28 100.0 32 ............................ ATGAAGCGCGGCGTGGCCATGCAGGCGGCTAA 1495 28 100.0 32 ............................ AAGCTGGCCCGCCAGCTAGACAGCACCATCGG 1555 28 100.0 32 ............................ GATGAGCCCACCAGCTACGGCGCTCAGCTTGA 1615 28 100.0 32 ............................ CAAGGACGCATCATAAGCTCCTGGGTATAGTA 1675 28 100.0 32 ............................ TCGCGTGCTTTGTTTTGCGCTTTGCTGATACG 1735 28 100.0 32 ............................ TTCAAGACCTTCGCTGCCGACGACCTGGTGGT 1795 28 100.0 32 ............................ CTTGCCGCCGTTGCCCGCCTGCCTGGCGTTAT 1855 28 100.0 32 ............................ ACTCGCCACGCGGCAGGGCGGGCAAGAAAAAC 1915 28 100.0 32 ............................ ATTAGAACTGCTCCTCATCTTGCGGTGTGTCT 1975 28 100.0 32 ............................ GCCGTGCGCATCGGTGATGAGGTCATCCGCTA 2035 28 100.0 32 ............................ CACCAAGACGGTCACGGCCTTCCAGTCGGGGC 2095 28 100.0 32 ............................ AGGTCCTCCAGCACATTCTCGACGCCCAGGAT 2155 28 100.0 32 ............................ ACCTCCATCGAGCGGTAGCGGAATGCGCCCGT 2215 28 100.0 32 ............................ GGGAGATCCAAGCATCAGTAGATTCGGGCTGC 2275 28 100.0 32 ............................ GGATTGTTGACGCGCTGATGCCGCTCTCTCGG 2335 28 100.0 32 ............................ GTGGCGCGGCTCCGAGGTAATCGGGCATCACG 2395 28 100.0 32 ............................ ACGGTAATGAGGGATTCCGGCGTCTCGATCCC 2455 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.6 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGTGGATTCCGGGGAAGACGCCGAAATCGGTCACGATGAAACGGAATGGGCGGTCACGATGGCCCGGAACAGGCGGTCACGATAGAACGGAACGGTCGGTCACGATGACCCGGAA # Right flank : AGCAAGGCCTGGCAACACCGCGGTCGCGAGCTAAAGCTACCTCCAACAACGTTCTTTTCTTATGTAGATGGAAGGCGGCCAGGGGCGTTCCGTTTACGCGCCGTGTCATGGCCGTGGGGTGCGGCGGTGGGGAGCGTTGCTGTTGGTGTTCTTCGCCAGGTCGGGCAACACCGGGGTCGCGAGCTGAAGCTACCTCCAACAGCGTACCTTTCTTATGTAGATGGTAGGCGGCAGGGGCGTTCCGTTTACGGGCCGTGTCATGGCCGTGGGGTGCGTCGGTGAGGAGCGCTGCTGTTGGTGTTCATCGCCAGGCTTGGCAACACCGCGGTCGCGAGCTAAAGCTACCTCCAACAACGTTCTTTTCTTATGTAGATGGAAGGCGGCAGGGGCGTTCTGTTTACGCGCCGTGTCATGGCCGTGGGGTGCGGCGGTGGGGAGCGCTGCTGTTGGTGTTCTCTCCAAGGTTGGCAACACCGCGGTCGCGAGCTAAAGCTACCTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 167821-174510 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPKI01000004.1 Halomonas sp. DQ26W DQ-26W_scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167821 28 100.0 32 ............................ AGCACTCGCAGCAGAAGCGCGGCGAATCAAAT 167881 28 100.0 32 ............................ ATCCGGTAGCAGGCGGCAATCCTCCAGCAGAG 167941 28 100.0 32 ............................ GCGAAGCGCTGGTAGTTCTCACGGCCGGTAAG 168001 28 100.0 32 ............................ TCAAGATCCACCAACAGCACCGCCACCTTGCG 168061 28 100.0 32 ............................ ATGTCCTCTTTCACGCCGTAGCCGATATGCAC 168121 28 100.0 32 ............................ ATGTCGGAGCTGGTCGAGCGCGCCCCGCCCTG 168181 28 100.0 32 ............................ TTCGATGACGCTATCGAGTTCTTCGGCGTTGA 168241 28 100.0 32 ............................ TCATGTGGATCGTCGCTATGAGGCCGCATATC 168301 28 100.0 32 ............................ TCGAACTCATCGACGCCAACAACGTCTTGTGC 168361 28 100.0 32 ............................ CATGCCGTCGCCGCCCCCGTCGCCCATCTCCA 168421 28 100.0 32 ............................ TGTTGGCGTTCGAGGGCGGTGAGTTTCATGTC 168481 28 100.0 32 ............................ ACTACCCGGACAGCGAGCTGGAGCTCTTGCAC 168541 28 100.0 32 ............................ AGCTCCCACACCTGGACGACAGCCCAGCTCCC 168601 28 100.0 32 ............................ ATACACGAGGGTCACAAGCCCATGAAAAGAGA 168661 28 100.0 32 ............................ ACTGTGCATATAGTGGCCCGACTGGCGCATGC 168721 28 100.0 32 ............................ GGCGTCCTCTACCGCTGGCACAGGGAAGACAT 168781 28 100.0 32 ............................ TATGCAAGATAGCCGTTTTCGTCGAATTCGTA 168841 28 100.0 32 ............................ ATCGCCGCGTCTTGGATCGAATACCTGAAAAA 168901 28 100.0 32 ............................ TGGACGACAGCCCAGCTCCCACACCTGGACGA 168961 28 100.0 32 ............................ CCCTCCGCACCGCTGAGGATAAGGCGGTGGAG 169021 28 100.0 32 ............................ GTCAGGCGCGGCTCGTCCTCGTACAGCGCCGC 169081 28 100.0 32 ............................ CCAGCGTAACCGCGCACGCGAAGCCGCACGTC 169141 28 100.0 32 ............................ TGAAGGCCCACCCCGCCGCCGTCCACGTCCGC 169201 28 100.0 32 ............................ TTCGGGGGAGGCGTAAGCCTCGGTGTCAGCGA 169261 28 100.0 32 ............................ AGGCGTGGCGATAAGATGGAGCTTGGCGCCGA 169321 28 100.0 32 ............................ CGGAGGTCCAGGCGCTGTGGGATCGCTGGTCA 169381 28 100.0 32 ............................ TGTCATGGCCCGCATAAGGCGCAGCGCCTGGG 169441 28 100.0 32 ............................ AGCTACGGTGGGGGCGACGTCTCTTGCTGTGT 169501 28 100.0 32 ............................ TGCAGTAGTTCCTTGCTTGATTTCATCGTTCC 169561 28 100.0 32 ............................ AGTCTGGGTGCCTGGTGGGCACGCGATACATA 169621 28 100.0 32 ............................ ATTCGAGAGAGTGGCCATCGGGAAGGGTTCGT 169681 28 100.0 32 ............................ ACGACAGCGCCTAGCGTGTGGTGGAAGCGGCC 169741 28 100.0 32 ............................ AATGGAAAAATTCGGCGCCGGCCAGATCCCTG 169801 28 100.0 32 ............................ GTCATGGGCTATACCTCGCGATAATTCGCCAT 169861 28 100.0 32 ............................ AGTCCTCGATGTTGGGCCGGCTGATCTTGTCG 169921 28 100.0 32 ............................ TCGAAGCCGCCGACCGCGAAGGCCTGGGCGAC 169981 28 100.0 33 ............................ CTGATGCGCCTCACTCTGCCCTGGCCTCCCAGC 170042 28 100.0 32 ............................ TGAGCGATACCGGCGCTGCAAACCAATATCTC 170102 28 100.0 32 ............................ TCCTTGACTTCCACATCCTGGCGGCGCTCCGG 170162 28 100.0 32 ............................ AGATACGCCTCCGAGCGAAAGCGCTTGTCTTT 170222 28 100.0 32 ............................ TCGCCGATGGCAGTGGCCGGCGCATGCCCATC 170282 28 100.0 32 ............................ TCATATCCTCGGCTTTGCCACTCGGCGGCGGC 170342 28 100.0 32 ............................ ACATGTGGTAAGCGCGACGCTGGCCGATGCCA 170402 28 100.0 32 ............................ ACTACCTCGAGGACGACGAGGAGGTGTCGTTC 170462 28 100.0 32 ............................ CGCGCCGAAGAGACGTTCGAGCAGACCGGCAG 170522 28 96.4 32 ............T............... TGGAGATGATCCAGCGCCACGAAGGCTTGCGC 170582 28 100.0 32 ............................ TCCACAGCTCGGCGGGCTTCACTCGTTTAGGC 170642 28 100.0 32 ............................ TGGGTCTTGATGCCCGACTCGAAGGCCATTCC 170702 28 100.0 32 ............................ TGGGCCTTTGACTCATTCCCCCGCCTTATTCT 170762 28 100.0 32 ............................ TTCGTGCGCCTGTCGCCGATGGAGGTGGATGG 170822 28 100.0 32 ............................ CGGCCAATGCGCCGATGACCTCCAGTCAGCTC 170882 28 100.0 32 ............................ TTGGTGGCCCATATCCTCGAACATGCGCTTTT 170942 28 100.0 31 ............................ CCGGGGGCTCGCAGCTCGACAGGATCGACGG 171001 28 100.0 32 ............................ AAAGATGCCTCGGCAGTAGTCTTGCGCACCGC 171061 28 100.0 32 ............................ ACTAGAGCGGCAGGAACTCAGCGAGAGCTAGC 171121 28 100.0 32 ............................ TATTCAATGAGGTGCATATGACAACCAAGACC 171181 28 100.0 32 ............................ CATGTACACAGCCCGCCAAGCGCGGGCTTTTT 171241 28 100.0 32 ............................ GCTTCAATAAGGGCTTTAGCTGTTGCGTCAAG 171301 28 100.0 32 ............................ ACATCCTCAAAGGCGATAACGAGAGGCGACGT 171361 28 100.0 32 ............................ TGACAGCCGGCCGCATCATCTAGACCTCAATG 171421 28 100.0 32 ............................ CATCGGTGCAGCCATGGGTATCCAGCAGCCTC 171481 28 100.0 32 ............................ TATGAACCGCGTTCCCGAATCCAAGCATTGGC 171541 28 100.0 32 ............................ ACCTGCCTGAAGCAGTAGACAAAGCGAGATAT 171601 28 100.0 32 ............................ TCAGGGCGCTCGTAGTTACGCAGGTCGCGGAT 171661 28 96.4 32 ...............T............ AAGGGTGCCCAGCCGGAGTGGGAAGGCGAGGC 171721 28 100.0 32 ............................ TGACCAGCCCCGCTGCTGCCTCGACGTGAGCC 171781 28 100.0 32 ............................ ATCTGCCCATCGACAATCGCGCCGATGATGAC 171841 28 100.0 32 ............................ TGGCGCTCTCTCGCCAGTCCTCCAGTTGCTCC 171901 28 100.0 32 ............................ GGCTCAGGCTGGCAGCCGGAACAGCAACTCGC 171961 28 100.0 32 ............................ CGCAAGAGCCGACAGTGCTGTTTCGTATGGCG 172021 28 100.0 32 ............................ AATTACTATAGCTGACAGTGCAAATACATCTC 172081 28 100.0 32 ............................ TGGTCGAGATAGCCGAGATCGGCCAGTGCCTG 172141 28 100.0 32 ............................ GTTGGGCATCGTGCCGTCGTTGCGGGCGATGA 172201 28 100.0 32 ............................ TAGTCGTGTCGATGGTCATGGATGACCTCCTC 172261 28 100.0 32 ............................ GGGGTGATAGGTGCTGGATCATGAATGACCAT 172321 28 100.0 32 ............................ AAAAGCAAGGCGCATAAAGACAAGCGCTTTCG 172381 28 100.0 33 ............................ TGGAAGGTGGGCAAGTGGCTGCGCGGCGAGCAT 172442 28 100.0 32 ............................ TGCCCCATGGGTAGGGTAACGGCATGGCTCGT 172502 28 100.0 32 ............................ ATCGGCTACATCCTCAAGGATTGGGACTTCGA 172562 28 100.0 32 ............................ TAATCCAGTGAAGGGGCGACTGCTGCGGGAGC 172622 28 100.0 32 ............................ AGCTTGTCGATGCCAGACCGGCTTCTGCGGTC 172682 28 100.0 32 ............................ CGATGAGCTGCTGGAAAAGGCGGCAGACATCA 172742 28 100.0 32 ............................ ATGTGCTCGTTGGCCGACCCGGTGTCGCTGAG 172802 28 100.0 32 ............................ GACCAGCGTATCCTCGGCAATATCCATATCCC 172862 28 100.0 32 ............................ TGGCAAAGAACGGCAAGCCCTGCGACCTCGTC 172922 28 96.4 32 A........................... GAGATGCGGGAAGACGAGAACGGGCTGTTCGT 172982 28 100.0 33 ............................ AAGACGGGCTACGCCACCCGAGCCGCCCTGTTA 173043 28 100.0 32 ............................ TGGCCTTCACGTCAATAGCCAGTTTCCTGGCG 173103 28 100.0 32 ............................ TTATCTGCGCTTTCATGCAGGCCGAGCCACTC 173163 28 100.0 32 ............................ ACCGGGGTTCTGCATACCGACCAAGTATTGAC 173223 28 100.0 32 ............................ TTAGATCCCCATCTTCTTGCAAAGACTGGCGA 173283 28 100.0 32 ............................ CGCAGCGAGATTGAATCCCTGGAGAGGGGGCT 173343 28 100.0 32 ............................ ATGCGGCGTATCTCGGAGTAGACGGGGGTGTA 173403 28 100.0 32 ............................ AAGAATGATCGACGCTCGCGACCATCACGATC 173463 28 100.0 32 ............................ AGTTGTACTCGACGATCTTCACGCCATGCCAC 173523 28 100.0 32 ............................ TGATTACTGGTAACATGATTTGTCGGAGATTT 173583 28 100.0 32 ............................ ACGCAGAGCCGATCTGCGACCACTTTTCGCGA 173643 28 100.0 32 ............................ TTGCGGATGGCTTTTGATTCGATGCGGACCTG 173703 28 100.0 32 ............................ CCACGCAACGACACTGCGCGGCCTCATAGCGA 173763 28 100.0 32 ............................ TTGTTGGCCAAGGCTTCCTTGGCGGGGATGTA 173823 28 100.0 32 ............................ TGTGCTTGCACACGCAGCACGGGGCGTTCAGG 173883 28 100.0 32 ............................ CGTGCAACATAAAATGGTTGCGATAGCGTAGG 173943 28 100.0 32 ............................ TAGCATCATCCATGCTATCAAAAACACCAAGC 174003 28 100.0 32 ............................ CAAGGGCTGGGGACGTGGGCCCGCCTGACGAG 174063 28 100.0 32 ............................ TCCATGATGCGCTCGGCTACGACGTAGTGGTT 174123 28 100.0 32 ............................ AGCACGGCATCATCGTCGACAAGCTCGAAGTC 174183 28 100.0 32 ............................ TGGCAGACCTATGAGCGGTGGCGCCCTACGTC 174243 28 100.0 32 ............................ AATTAAAATGCCTGTCTCGCACCCTCGGATAA 174303 28 100.0 32 ............................ AGACGCCTTTTTGCCGTTGGGCAGCAGGGTGC 174363 28 100.0 32 ............................ TGGCCCATCGACTCTTCGCTGCCCTCGACCTC 174423 28 100.0 32 ............................ AGAGCAGCGGGCGATGTCGAGTGTTAGCGTTT 174483 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 112 28 99.9 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : TCGGCTTGAGCAGTTGATGGCGATTTCATGGCTCACCGGCATGCGCGATCACGTAATGGTCGAAGCCATTCAGCCAGTACCTGCTGAAGTGAAGCACCGTGTCGTCCGGCGTCGACAGTTCAATACCGGAAGTCCTAGCCGGGCGAAGCGTTATGCCCAACGGCACGGGGTTGAAATTGAAGAGGCCCAGCGCTTGATGGAAACGCCTGCCGCGCGGCAGATCGCCCTGCCTTTCGTGCAGGTCAGCAGCCGCTCCAGTGGGCAGCGTTTCGCGCTATTCATCGAGCATGACCAACTACAGTCGCAGCCTGTCACTGGCTGCTTCAATCATTACGGGTTGAGCAATGAGGCAACGGTGCCCTGGTTCTGACCCCTTTTTAGGAGGGCGGCATTAGGTTCTTAAAAATCAAGTTGTTGGCGACGCCTCTCTGAAAAGGGAGGCGTTGTTCTATCAAGCCATTGCTCTTTAACAATCAATCGCTTAACTTGAATAGGTTCTA # Right flank : TCGTACTCGCCGCCCCATGGCCGGCGCCCATCGTGCGCTGCTGCGTATTCCGGCGAACGTGACCGCTCATTCCGGCGATCGTGACCGATTTGCTCACCGGTCTCTCGCTGGCTCTGGTTTTGTAAGCTGACCGGTCACGATGGGTCAACTTCTGTTTGTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //