Array 1 127719-127177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045806.1 Gordonia pseudoamarae strain BEN371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 127718 37 100.0 38 ..................................... CAGACGTAGCGGAACATCACCGTCGAATTTGAGTTCGA 127643 37 100.0 32 ..................................... TGTATCGATTTCTTTTCCGTCGGCATCACGTG 127574 37 100.0 37 ..................................... CCGAGTTGGCGCGCCAGATTTTCGAGTTGCTGCTGCA 127500 37 100.0 33 ..................................... AGTCTGCGGGTCACTGACGTATTGCAGATTGAT 127430 37 100.0 42 ..................................... TTGAACACTTGTATGACACGAGCATCGATTTCTTCCCCGTCG 127351 37 100.0 32 ..................................... GGTGTCACGGGTGATGGTGATCTTGTGTTTTC 127282 37 100.0 32 ..................................... ACAGTCACAGTGACATCCACCTTCAAGACCCC 127213 37 97.3 0 ...............................C..... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 99.7 35 ATCAAGAGCCATGTCTCGCTGAACAGCGAATTGAAAC # Left flank : GCGAACAGTCATGAACCCCGACGAGCAGTGGACCGGCCTGTCGTGGCGGTAACCGTTCTCGTCGCCTACGATGTCACCCAGGACCGGCGACGCGCCCGACTCGCCGCACTCCTCCAATCGTGGGGTGACCGCATCCAGTACTCGGTGTTCATCTGCCGGATCGGCACCGAACAACTCGGTCCCCTCACCGACGAAATCACCCGCATCGTCGACCTCGACGAAGACTCCATCTTCATCGTCCGCCAATGCAAAACGTGCTGGTCAGACATCGCCACACTCGGTCAAGGCGAACCCCCACGAACCGACCTCTGCTGGGAGGCGTTCTGACCGCGGAGGATGGTGCGCGGTCCGCCACACCCCCCGAGGTGTGTGCATTCGCTCTGACATGCGAAAACACGCTAATTAGGACCGAATATGTCCCCATTCGAACCAGCCCCTCGCAGGGGTGTGTGCAAACCCGCCGCATCGTGGCTGGTCAGACCCGCCAATTGCCTGGTACC # Right flank : AGCTTGCTCGGTGGAGTAACCCGTGAGTTGGCCCACGAACTAAATATTTATGTCCTGTTCAATCGAGAGTCGAGACAAGAACAATACTTGAATACCTCCGTCGTCATCGAGTTTCAGGTAATATTCTTTGGGACGCGAAATTGGGTTGCACTTGTTGACGACGGCGATGGTCCACGGACCGTGACGGTGGCGTGCGAGTAGTGCCCCCATAGAGTGGTGTAGCACCGGCGTGCGGGATCGCGTTCGACCTCGCTGCCGCGGTCGCGTCCGGTGGCCAGCGCCTGGCCGACATCAATCGTGCCCCGACCGATCCGGGAGTGTTCGGGCCGGTAGCCTCGGACCCAACGGTGTCGCGGCTGGTCTCGACGCCGGCCGCCGATACACCCGCAGCACTGTCGGCGATCACCACCGCACGGTCCGCGGACCGCGCACGGTGCTGAATCCGGGCCGGCGCCAAGGTGCCCGAGCACGCCCGAGACGCACGTCATCGGCCGATCGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCAAGAGCCATGTCTCGCTGAACAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 4905201-4904640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045806.1 Gordonia pseudoamarae strain BEN371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4905200 29 100.0 32 ............................. CCGAGAGCGCGCAAGGTGTGGCCCAGGAACAG 4905139 29 100.0 32 ............................. CCGGCTTAGTGGGGTGCGGATGCTTGAATGCC 4905078 29 100.0 32 ............................. GAATGGGGGTGGCTCGACGAGCTTCCCGCTGA 4905017 29 96.6 32 ............................G TGGCCGAAGTCCTCGTCACCGCCCAGGCAGTC 4904956 29 100.0 32 ............................. GAGTGGTGCTCAGCGACCGCGCACCGGATCGT 4904895 29 100.0 32 ............................. GTGTCACTCATGATTCCCCCAATTCGACTGGC 4904834 29 79.3 15 ......................CAGA.GG ATCAACCGTCGTCGA Deletion [4904791] 4904790 29 93.1 32 ..........T.................G GACACCGGGGACAACAAGACCAAGGAGGCGAC 4904729 29 100.0 32 ............................. ACCGGGGAAATGACGTTAGCCCATAGCCATGT 4904668 29 89.7 0 ..........................TGA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 30 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : ACCGGAAATGACCGCAACACTCCAGCCTGGTCGGGCACCAACTGGCCCGGGAACCACAAATCGCATTGCACCTGCTCACCCGGACGATGGACCAGACGGTCACACGGATCCGCGGGCGCATACTCGGGGCGGATACGTGCCACATTCTCGGCGAACCACGACCGGCCACCGGACCAGCCGACCCGTTCGGCGATCACCGTGGCCGGCATCGTCGGAAACCGAGTCAACAGTTCGCGAACAGCAGGCTCGATCTGTGCCCACCCCGACGACCGCGGACGCGGACGCTCGTAGCGCAGCGGCGCATCAGAGCGCACCGCCTTGGCCACCGTATTGCGGGACAACCCCAACTGCCGGGCGATCGCGGCTTGAGACAACCCCTCCGACCGGTGTAACTGACGAATCAACGCCCAGTCCTCCACAGTGATCACTCTCCAATCATTGGATGGTGCTCACTTTTCGACCGTACTCACCTGCTCACTTTTGGACCGGAGCCGACAAAA # Right flank : ACCTCCCCAGTTTGAGTGGACACCTGTGATAGCGGGACGAAGGGTCCTGCTGGGAGGATGTCAGTATGTCCAGGACGCGTCGGTCGTTTACGCCTGAGTTCAAGGCGGAGGCTGCTCGTCGGGTGATTGACGGGGGCCGGCCGTCAGCGAGGTCGCACGTGAACTCAACCTGCATGAGAGTTTGTTGGGCAAATGGGTTCGCGCCGAACGGATGCGCGATGGTGTCGCCGACGAGGTGTGCAGCGCCCCACCCGATCGAGACTTGTCGGCTGGTGAGCGCGCGGAATTGACACGGCTGCGTGCCGAGCTCGCCGAGAAGGACCGCGACATCGCGTTCCTGAAAAAGTATCGGCGTACTTTGCGGCACAGCAACATCGGTGAGCAAGTTCGAGCTCATCGCCGCGGAGTGCGCCGACCACGAGATCACGGAACTGACTGACTTGCTGGGTGTTTCACGATCTGGCTACTACGCGTGGGCGGATCGGCAATGCCGCACCGAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4908257-4907374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045806.1 Gordonia pseudoamarae strain BEN371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4908256 29 96.6 32 ............................T ACGTGCACGACCCGAATGATCGGCAGTGCCGC 4908195 29 96.6 32 ............................T GCTTCGGCATCACCACCATCGCCGTGTGGATA 4908134 29 100.0 32 ............................. TGTATACCGAGTACGGGATTGAAAGTATAGGC 4908073 29 100.0 32 ............................. TCGTCAACGTCGATACCCTCCGGTGCCGGCAT 4908012 29 93.1 32 ............T...............C GCGCCAAGCACGCACAAGACGGCGTCATGCAA 4907951 29 100.0 32 ............................. GCGTGGTCGGGGTGGATAGAGACCATATCCCT 4907890 29 100.0 32 ............................. ATTTCCGAAATGCAGCTCGAACCGGCAGGGTT 4907829 29 96.6 32 ............................C TTGTCTAGCTAGGTTCCGTCGCCCACTACGTC 4907768 29 96.6 32 ............................C GGAAGTTCGACTCATCGACCGTGTTCCCATGG 4907707 29 96.6 32 ............................T GTGAAACGGTCCGTAGATTCAACGGTGACTGA 4907646 29 96.6 32 ............................C CTAGCCGAAGTTGGACCGCCCCCGGACTCCCT 4907585 29 96.6 32 ............................C GCTTCAAGCGCGCACAGGGCCGCGTCATTCAA 4907524 29 100.0 32 ............................. TCGGGACCGGTGTAGTCCCACACTGCCGAGCG 4907463 29 100.0 32 ............................. TCAGTCGATGAGATCAAGCGCGCCAACAAGGT 4907402 29 89.7 0 ..........................TGT | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.3 32 GTGCTCCCCGCGCGAGCGGGGATGATCCG # Left flank : CACAAGTGCTCCCCGCGCGAGCGGGGATGATCCTTGAGGCGGCGTGTCTTCGCGTCGTCGTCAAGATTCGAGCCGTCCACGTCAATCGCCCGGCATCGCAGGACCGAGGACGTGCCAGACGCTCCATATTTCATCACGCGGCACCGTGATGACGAGGTCACTGGGCTGTGGTCGGAACTCAAAGCGCCACCACGGCCATGTGACACCATTCGCATCGACAAAGACCCCTGGCGCAAACTGTGCGGCCGGAGTGTCATCGGACCCGAATACGTGCGTAGCCTTGACGGTCATCTCGGGAATGTCGTCGGCGTAGGGATACTCGACCATCACGCACCGCCGTTGAGGCCGAGTCCGGCGCGCTCGGCGGTGTCGTCTCCATGCACCGCGCCGACGCCCGCCTCGCCGAGCTTGGCGATGATTCGTTGAGCGTCTTCGGCCGAGACGTGGGAGGAGATCGTCACGTACGCCACGTCGTCCAACGTAACACCGCCGTGTATCTG # Right flank : CAGCTCCGGTCGAAAAGTGCGCTGCTGTGTCCGGTCGAAAAGTGAGCAGGTTACGGGTTCGAGTTTGCCTGACGGTCGGCGTCGACGGAAGGCAGTGACTCGATTGCGGTGTGTTTGATGCGGTAGCTGGTGCCTTTGAGGGCGATGACGTCGGCGTGGTGAACGATCCGATCGATCATGGCCGAGGCGATGGTGGCTTCACCGAACACTTCTCCCCACCGGGAGAACGGCAGGTTGGAGGTCAGAATGATCGACGACTTCTCGTATCGGCTGGAGACGAGTTGGAAGAACAGGTTGGCAGCTTCGGCATCGAAAGGGATGTAGCCGACTTCGTCGATCACGATCAGTCCGATCCGGCTGATCCTCTTGAGTTCTGTGTCGAGTCGCCCGAGTCGGTGGGCCTCGGCCAGCCGGGTGATCCACGCTGTTGCCGAGGCAAACCCGACACGATAGCCGGTATGGGCGGCAGCGACGGCCAGCGCCGTCGCGAGATGGGTTTT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4909484-4908723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045806.1 Gordonia pseudoamarae strain BEN371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4909483 29 100.0 32 ............................. AATGATCCGCATGTTCAGCCGTTCGCGGCGTT 4909422 29 100.0 32 ............................. ATGCGTTTGCTGTAGTGCCCGTCGGGCATGGA 4909361 29 100.0 32 ............................. GAGCCCTGGTACCCGAATACGGACAGCCCGTC 4909300 29 100.0 32 ............................. AACTCACCTGCCCACAGCGCCGAAGCGGGCAG 4909239 29 100.0 32 ............................. TCAACCATTGAAATGCTCAACAACATGATGGA 4909178 29 96.6 32 ............................G TGATGAGTGGCAACAAGTTTGAGTTGACCGGC 4909117 29 100.0 32 ............................. GTTACGGCCGCGCGGAATTGCGCCACAGCAGT 4909056 29 100.0 32 ............................. ACGCTTGACGATGCCCGTGCCGCAATCCGTGA 4908995 29 100.0 32 ............................. CTGACCGTGGCATTCGCTCCCGATATGGACGC 4908934 29 96.6 32 ............................G TCGACACCGCTGCCGGTGGCCGACGTGTAGAG 4908873 29 96.6 32 ............................G TCCTCACCCTCGAACTCGGGTGCGGAATCCGC 4908812 29 100.0 32 ............................. GTTCCGTAAAGCAACGCCGAAAACAGTCACAA 4908751 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.0 32 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : AGTCGATGTGGCCAGCGGTCAAGGCCATGCTGCACAGCGTCTATGACCAACCCACTGCTGGTGCGGTGAACGCCCAGTTCGACCGGCTGCTCGAATACACCGAAGACCGCCTACCCGAAGTGGCCGAACACCTCGGTGACGCCCGTGAAGACCTGCTGGCATTCGCCGCGTTTCCTGATGACGTGTGGCGCCAGATCTGGTCCAACAACCCCACAGAACGACTCAACCGCGAGATCCGGCGCCGCACCGACGTCGTAGGCATCTTCCCGAACCGCGATGCCATCGTCCGTCTCATTGGCGCAGTGCTCGCCGAGCAGACCGACGAATGGGCCGAAGGCCGCCGCTACCTCGGCCTCGAAGTGCTCAGCCGCTGCCGGCTGACCGTCACCGACACCGACCACACGCCGGAGGTGAACACCGACCCGCTGATCCAACTACCTGTCTGACCACCTACGAAGGACCACAATCAGCTACACCACTACGCGGGACTTGACCCACGC # Right flank : TGAGGCGGCGTGTCTTCGCGTCGTCGTCAAGATTCGAGCCGTCCACGTCAATCGCCCGGCATCGCAGGACCGAGGACGTGCCAGACGCTCCATATTTCATCACGCGGCACCGTGATGACGAGGTCACTGGGCTGTGGTCGGAACTCAAAGCGCCACCACGGCCATGTGACACCATTCGCATCGACAAAGACCCCTGGCGCAAACTGTGCGGCCGGAGTGTCATCGGACCCGAATACGTGCGTAGCCTTGACGGTCATCTCGGGAATGTCGTCGGCGTAGGGATACTCGACCATCACGCACCGCCGTTGAGGCCGAGTCCGGCGCGCTCGGCGGTGTCGTCTCCATGCACCGCGCCGACGCCCGCCTCGCCGAGCTTGGCGATGATTCGTTGAGCGTCTTCGGCCGAGACGTGGGAGGAGATCGTCACGTACGCCACGTCGTCCAACGTAACACCGCCGTGTATCTGGTGCTCCCCGCGCGAGCGGGGATGATCCTACGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4911099-4910948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045806.1 Gordonia pseudoamarae strain BEN371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4911098 29 96.6 32 ............................G TGGTATGACACCCATGTTGAGGAGATCACTAC 4911037 29 100.0 32 ............................. ACCGAGCGGCAGTGTCGCGACAGCCGACGAGA 4910976 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : TGTCCATCCGGCGGGTCGAGACCCCGGCCAGGTAGCAGTCGGCCACGACGGTGATCAGCGCCGACTCGGCGCGCTTGCGGCGTTCGAGCAACCACTCGGGAAAATAGGTGCCAGAGCGCAGCTTCGGCACGGCGACGTCGATCGTGCCCACACGGGTATCGAGAGGCCGGTGCCGGTATCCGTTCCGGTGATTGATGCGGTCTTCGGACCGGCGGCCCCACTCGGCGCCGCACACAGCGTCGGCATCGGCGGAGAGCAGTGCGTTGATCATCGTCTGCAGCAGCTCACGCATCAGATCGGGCGAGGCCTCAGCCAGGGCTTGGCCAAGCAAGCCAGCAGGGTCGACAATGTGGGGTGCGGTCATCGTGATGACTCCGTTCGAGGATTCTGTGGAAGGTTGACTCGAAGGATCACACGGTGACCGCTTCCCTGCCCGACAGCTACACGCTGCCGCCACGGTCCTGGTCACCGAGTTACACCACTCTATGGGGCACTACTGA # Right flank : AGCGGCAGGTGCGCCGTCCGACACAGTAGTGCCCCATAGAGTGGTGTAACTCGGTGACCAGGACCGTGGCCGGCAGCGTGTAGCTGTCGGGCAGGGAAGCGGTCACCGTGTGATCCTTCGAGTCAACCTTCCACAGAATCCTCGAACGGAGTCATCACGATGACCGCACCCCACATTGTCGACCCTGCTGGCTTGCTTGGCCAAGCCCTGGCTGAGGCCTCGCCCGATCTGATGCGTGAGCTGCTGCAGACGATGATCAACGCACTGCTCTCCGCCGATGCCGACGCTGTGTGCGGCGCCGAGTGGGGCCGCCGGTCCGAAGACCGCATCAATCACCGGAACGGATACCGGCACCGGCCTCTCGATACCCGTGTGGGCACGATCGACGTCGCCGTGCCGAAGCTGCGCTCTGGCACCTATTTTCCCGAGTGGTTGCTCGAACGCCGCAAGCGCGCCGAGTCGGCGCTGATCACCGTCGTGGCCGACTGCTACCTGGCCGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4913396-4912573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045806.1 Gordonia pseudoamarae strain BEN371 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4913395 29 96.6 32 ............................G GTTGCGGAGTCGGTGCTTGCCCGCGAGATTGG 4913334 29 100.0 33 ............................. AGGGACGACTGTCAAACTGTTCGCAGTTCGTAC 4913272 29 100.0 32 ............................. ACGTAGAAGGGCATCAGAAGCGATGAGCAACG 4913211 29 100.0 32 ............................. TCGGCCACTTCGGCCGGCGTTGCAAGGTCATC 4913150 29 100.0 32 ............................. GTCAAGACCCTGAGCACCTGAAGGTCCGCGGC 4913089 29 100.0 32 ............................. AACCGCGTCATACTCGGCGCTGGCGGAGCAGA 4913028 29 96.6 32 ............................G GTGGCCGAGCAGCTGCGGTCGGCCGCCGCGGC 4912967 29 100.0 32 ............................. AGGCACCAGGTGGTGCCGGCGGCCATGTCCGC 4912906 29 96.6 32 ............................G TATCCGTGGGGGGCCAGGACCATGCCGGCGGC 4912845 29 100.0 32 ............................. CCGATTGACCGGATGACCGGTCACCACCCTGC 4912784 29 100.0 32 ............................. AGGCAATAATGTGAGCCGCGTCACACTATGGG 4912723 29 96.6 32 ............................G TGGAATCCGAGTGGTTGGCCGAGGGCATCACC 4912662 29 96.6 32 ............................G GCGTGCCCGGAACCCAGGACTACAGCCTCGGC 4912601 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : CGACGACGAAAACTTTGCTGATGTGATCGAACTATGGGATGACCGACAGCAGAACGTCGCCGGTGGCCGAAACTTTGCGCCGGAGGATCTGGAGCCACCATGGTAGTCGTCGTTCTGACCAATTGTCCGGCGAAGCTGCGAGGACACCTGACACGATGGCTGCTTGAGATCAGCGCAGGGGTCTACGTCGGTCACGTCCCGGCCCGCGTTAGAGATCTTCTGTGGAATCAAGTTGTCGAGTACGTCAAGGATGGTAAGGCGCTCATGGTGCATAGCACGGTTGGTGAACAGAGGCTCGCGTTCCGTACGCATCAGCACGAGTGGGAGCCCGTCGACTACGACGGGGTTCTACTGATGCGTAGGCCGGCGGACAATTCAACTGTTCGCACACGGCGGGCACGTCGCGGATGGAGCACTGCGTCTCAGCGGCGTAGGTGGAGGTAACCGCTCAACTGCATCTGATAGCAGCGGTCCGCTACTATAATTGCTGGTTACCAAGT # Right flank : CGGTAGCCCCGGCCGCAAGGCGTAAGCGCGGAGTGCTCGGTCAAGTCCCGCGTAGTGGTGTAGCTGATTGTGGTCCTTCGTAGGTGGTCAGACAGGTAGTTGGATCAGCGGGTCGGTGTTCACCTCCGGCGTGTGGTCGGTGTCGGTGACGGTCAGCCGGCAGCGGCTGAGCACTTCGAGGCCGAGGTAGCGGCGGCCTTCGGCCCATTCGTCGGTCTGCTCGGCGAGCACTGCGCCAATGAGACGGACGATGGCATCGCGGTTCGGGAAGATGCCTACGACGTCGGTGCGGCGCCGGATCTCGCGGTTGAGTCGTTCTGTGGGGTTGTTGGACCAGATCTGGCGCCACACGTCATCAGGAAACGCGGCGAATGCCAGCAGGTCTTCACGGGCGTCACCGAGGTGTTCGGCCACTTCGGGTAGGCGGTCTTCGGTGTATTCGAGCAGCCGGTCGAACTGGGCGTTCACCGCACCAGCAGTGGGTTGGTCATAGACGCTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //