Array 1 2643850-2644658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028103.1 Fusobacterium varium ATCC 27725 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2643850 29 100.0 37 ............................. TGGTTCTGGTATAAACTTAGTAAGACAGTTTAATAAT 2643916 29 100.0 36 ............................. AATGCTTTAGTTCCTACATTAAAAGCAAAACTAACA 2643981 29 100.0 37 ............................. TAAAAAAGCTTCTTTTAAAAGCTCTTGTTGTTTTCCT 2644047 29 100.0 36 ............................. AAAATATTTTGATAAATTTAAAAATTAGTGTAAATA 2644112 29 100.0 35 ............................. TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT 2644176 29 100.0 35 ............................. TCTAATAAAAGTGAAAAAATAGATGAATTGTTTCT 2644240 29 100.0 36 ............................. TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA 2644305 29 100.0 36 ............................. TCTTTATATTTTTGCACTTAAAATGCACTTAAAAAA 2644370 29 100.0 36 ............................. TTTAAAGATGTTCCAGCCATACTTCCTTTTATTCCA 2644435 29 100.0 36 ............................. TTAAAATTTTAAGTTTATATAGAACCTATAGTCATT 2644500 29 100.0 37 ............................. TTGTATTCCTCATAAACTTTATCAAAATGTTCACCTG 2644566 29 100.0 35 ............................. ATATTTAAAAAATAGCTCTCTCTCCTCTTATCAAA 2644630 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 100.0 36 GTTGAATAGTAACTTGGTAGTTTTTAAAT # Left flank : ATGTGGCTGGGAAGTTTTATTGCTAAGTATATTTATATGAGAATAAAGTTTTTTATAAATAGAATAGGAAGTAAAGGAGAGCAAAAAGAATATAAGATTATAAAAATGATTATAGATCAGAAAAGATATTTTAAAAAACCTGGAAGCAAATATTATATTAATTTTTATTATTTAATTGCTGATGTAAATGGAGAAGAGGTAAAATTCCTTATAGAAAAGGAGTTTTATGATAAGTATTTGGGAAAAAAGAGTATGAATATTAACATAAAAAAAGGATCACTTGGAATTTTTTATGGAATAAATTTAGTAGATTTAGAAACTAAATAAATTTTCCAAGTAAAAAATAGTACAATTTTTTCTAAGCTAGATTTCAAAGTAAATTGAGAAAGAAAAAGTTGTTTGATAAAAATTTTGATGAACTTGGAAAAATAAAGATAAAATTTTGGTAAAATTATGGTTTAAAGATGAAAAAATAAAAAATGAAGTTTAGTTTGATGAGG # Right flank : TAGCAAAGTCGAGAGTCTTTATATGATTGATTTTACAGTTGAATAGTAACTTATAATAAAAATTTTAAAATGATAGGAGATGATAATCTAAATAAAAAAATTCTTTTAAAAAATTAAAAATTTTAAATTAATGACTATTATTTATTAAAAAATGAGGTATAATTAATATTAAGTATTAAAAAGGAGGGATGAAATGGAAAGTTGGGTTTTAGAATTAAAAGTTTTTTTATTGGAAGATATAGAATCACATAGTGCTATAGAAAAAATAGCAGCTCTCATAGATTCTACTTTTGATAAGAGTGAATATTGGAAAAAATATCATAAAGATAAAAAAGTAAAAGAATATTGTTTTAATTCTTTCTATCCGGTAAAAGTCAATGCCCAAAAATACAATGCTGGAGAAATATATACAGTTCAGATACGAACTATCTCTAAGGAATTGAAAGAGCATTTTATGAAATATTTGAAAGACAATATAACAAAAGAATTAAAAGGGCTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACTTGGTAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2653767-2655350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028103.1 Fusobacterium varium ATCC 27725 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2653767 29 100.0 35 ............................. TTGAACAATAGAAGTACTGATCTTCCTAATTTCTA 2653831 29 100.0 36 ............................. GGGTTATGTACTACTAAGTCAGGAGCAATGGAAGGT 2653896 29 100.0 36 ............................. GGCATATCCTCTATCTTATTTAGTTTATCTAACTTA 2653961 29 100.0 36 ............................. AGGTATTCTAATAAAGAAGTTAGAACATTTAGATAT 2654026 29 100.0 36 ............................. AGAAAAAATATTATCAGTTCCAGATAAGATGTTTAG 2654091 29 100.0 36 ............................. AAAATATACTGAGCCACATTCAATATTTTTTCCATA 2654156 29 100.0 36 ............................. TTTTTAGGTGTTGCAGGGTATAGAGGTGTAAATGTA 2654221 29 100.0 36 ............................. TGAAATTTAAAGTAAAAATTAAAGAAACTCAATTAG 2654286 29 100.0 36 ............................. ATTTGAAAATCATTATGAAAATGTAAGTCATGAAAA 2654351 29 100.0 37 ............................. TAAAAATATAACTTATAGTCCAGAAGCTTATTTACTA 2654417 29 100.0 37 ............................. TCTCCCTGTTCTATAAGAATATTTTTTCTTATGTCCA 2654483 29 100.0 35 ............................. TATGTAAATTCATATTTTTTTAAAGATGCATGGAT 2654547 29 100.0 36 ............................. AAAAGGAGAAATAAAGCTAAGAAAAAAAAGAACAGA 2654612 29 100.0 36 ............................. TACAGCTTTCTAGCCATTATTATTTCTTTGTATGCT 2654677 29 100.0 35 ............................. TTTTGAAATTTTAGGTTCATTTCTTCTGTAGTCAA 2654741 29 100.0 35 ............................. ATTCAGATATAAAAGTACCAGCTCTGAAAGTTTGA 2654805 29 100.0 35 ............................. TTTTACCCCCTTAACTTTAAAAATGCAATTAATTT 2654869 29 100.0 36 ............................. CCATTAATAAAATCCATTACTGCACTATCTATTTTA 2654934 29 100.0 36 ............................. ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC 2654999 29 100.0 36 ............................. ATTCTTATTTTGTCTAATATTTTATATCCTGTAATC 2655064 29 100.0 35 ............................. GGAATTAATAAAACAAAATGGTTCATGTGCAGGTG 2655128 29 100.0 36 ............................. AAAAGTATTATTTTTTCTAACTTCATTTTTCAAATT 2655193 29 100.0 36 ............................. ACCAACTTATAAAATTATATTTCTTGCTAGGAAAAA 2655258 29 100.0 35 ............................. CATATATAACTACTGCTACTGCTATTTGTTACAAA 2655322 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.9 36 GTTGAATAGTAACTTAGAAGTTTTTAAAT # Left flank : GAAAATAAGGAATTTATTCCATTTTATATGAAGGAAAAGATGTAAATGAAAGGTAAAAACTATAACTATGTATTTCTTTTTTACGATATAAATGAAAAAAGAGTAAATAAAGTTTTTAAAATTTGTAAGAAGTATTTAAGTCACCACCAAAGATCTGTATTTCGTGGAGAAATAACACCTAGCAATTTAATAAAAATGCGATTAGAATTAAAAGATGTTATTGACAAAAAGGAAGATTTTATAAGCATTGTAAAATTGATAAGTGAGCATTATTTCGATGAAGAGATAATAGGAACACCTTGGAAAGATGACGAAAATATATTTATATGATTTCCAAGTCCAAAAGCTAATAATTTTATCAAATAATTATTTTAAAAGGGATTGAGAAGAAAAAATTTATTTGATAAAAATTCTAGTAAGCTTGGAAAAATAGAAAGAAAATCCTGATAAAATCATAGTTGAAGATATTAATTAATAATAACGAGCTTGATTTGATGAGT # Right flank : TAGAAAATATTATATCGTTGCACATGTGCAATGATATGATAGAATATAAATTTATTAACTAAATATAAAAAACAGGCTAAGAATTTTTCAGCCTGTTGTTATGATATTAGCAGTTCCTAAAAATTGATTTTTAAAGAATAAGTATAAAATATCAGTATCTAAAGGATTGTATTTAACAATAACTTTTTTTCCTTCCAATGTGGTTAAAAAATTATTTGTATAGATAAAATTATTAAATCTTAAAGAAGACTTACTTATTTTTCTGCTGGCTTCCTGAAGAAAGACATCAAATTCACGAACGTTTGAAATATTTTCTACCATTCCATATTTGAGTGTAAAGTCATATTTTTGATTATCTAAATAGATATATGAATCAAGAAAACTTTTCAAATTCTGATATGAAAGATTTTTATTATTTTGGTAATAAAATTTTTCTATATCTTCTTCTAGAAAAGAGATAAACTTTTTAATTTCTTCATTCTCACTAAAATATTCAGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACTTAGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 2896356-2897543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028103.1 Fusobacterium varium ATCC 27725 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2896356 29 100.0 36 ............................. TGGGCCACATACTTGTAGAGGTGTAAGGAAGTCTAT 2896421 29 100.0 36 ............................. TATAGTCCACAGAATTAAAAATCATTTCGTTAATGT 2896486 29 100.0 36 ............................. GGTGTAAAAATAATTTTTAAAGGAGATAATAAATGA 2896551 29 100.0 35 ............................. ATATAGCTCACTTAAATCAGTTGCTATACTTAACT 2896615 29 100.0 34 ............................. AGTTTCTCATACTTATCTCTTAATATATTGCCTG 2896678 29 100.0 34 ............................. CAGTAGTATAACTATATTCATAAATACATTCATA 2896741 29 100.0 36 ............................. ATTAAAAGAAATTCTAAAATTGAATCTAACACTGCT 2896806 29 100.0 36 ............................. GACACAGGACTTAAAAGTATTAGAAAGACTAAGAAA 2896871 29 100.0 35 ............................. TATAAGTTAATTCAGTATCTCTTTTCTTGACCAAT 2896935 29 100.0 35 ............................. TCTACTGCTCCTGTCATACTGTAAAACGATAAATA 2896999 29 100.0 36 ............................. TTATATATATAATCCTTTAGGTCCTTTATATTTAGT 2897064 29 100.0 36 ............................. ACACTTTTAAGAACCTTTAACATTTCAGCATTTTCT 2897129 29 100.0 36 ............................. TATAATAACTCCTTATATTTCAGCTTTTTTCGGAGT 2897194 29 100.0 36 ............................. CATCTAAACCAGCTTAAAACTATAAGAGGTATTCCT 2897259 29 100.0 35 ............................. ATACAAAGTAGTATTTGAATAGAAATATTATATAA 2897323 29 100.0 35 ............................. GCAAATCCTACACATAAAAAAATGTGTAGGGTTTT 2897387 29 100.0 36 ............................. AATAATTGAAAATGCAGATAATGGAAGAGATGTAGT 2897452 29 100.0 34 ............................. ACCTCTAGTTGATTCGATATATCAATTGCTCCAA 2897515 29 79.3 0 A.......TC....GAT............ | ========== ====== ====== ====== ============================= ==================================== ================== 19 29 98.9 35 CTTGAATAGTAACTTGGAAGTTTTTAAAT # Left flank : GAATTGTATTCTCCCTTTTCTCTCATCTCTCTAAAAGTAGTTATTCCTATTATTGGTTTCAATTATTTTTCCTCCTCAACATCTCTTTGTTCTATTACATTCTACTATATAATATACTCTCTAGCGAAAGTTTTTACAATACAGAATTGAAAAATAATCTCAATATATATTTTCACATATAGCTCAATTTTGAAATATTTCATATTATTTTAATAAAAACAAACAAATTTTTCTAAACTTTTTAAATTTTTATTAATATAGTTAGGCAATTACAATATAAGAATTTTGTTATATAAAAAATAAATTACTTGTATATTCCTACAACATTATAATTTTTATTTTCCAAGTTAAAAATTGTATTTTTTACAATAGCATTCTTTAAGATTATTTATTTCAACATCAGTAATTTATAGTATATTTGTTGGAATTTTTTTACTTAATATGTTATAATTTGTACATTAGCAAGCAATAAAATATTAAGAAAGTTTAAATTTATGACC # Right flank : TATACTTTTCCATCAAATTCTTTCTCAGCAGTAAGATTGAATCTCAACTCATAAGTTTTCTCCCTTTTTCAAATAAAAAAGAGAAGAACTGGATATTAGCTCATGACATTTTGCTATATCTTCAACTTCTCTAAAATTTCAAATTCTTATTTTATTACATTCTTAATGTTAATTATTTATTATTAATTACTTATCGAATAAAATATCAAGCTCCATTAATAAGTCATTATATCTTTTTAATTCATGATTTTTTACTGGAATTAATAGATTATAAATACAATGCTGAAACACATCTGCATCTTTTAGTAATTCATCATATTCTGAATCTATCCTTTCCTTATTACTATGGTTGTGAATGGCTGTACAGATTATATCAATTTCTGTAGAAGTTGCCACCTGTAATTTTCTAATATTTTACGAGCCATAATTGCTCCTTTTTGTCCATGATCTTTTGAATATTCAAATTTATAAGTGTATATATCATGTAACATTCCAGCCAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAATAGTAACTTGGAAGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //