Array 1 6194573-6189780 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VIGB01000003.1 Kitasatospora acidiphila strain MMS16-CNU292 contig.1, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ===================================================================================================================================== ==================
6194572 29 100.0 32 ............................. TTCTCGAACTGGTCGCCGAGCCGGACGTTCTT
6194511 29 100.0 32 ............................. GCGGGAGCGACCCGCGGCACGGTGGCCTGATG
6194450 29 100.0 32 ............................. GGCGCGGTCACCGTCGGCCTGCTGTTCCTGAT
6194389 29 96.6 32 ............................T TCGGGGCCGCCGTGCGGGCCGCCGGCATCCCC
6194328 29 100.0 32 ............................. GACTTGCTGCCCATTTCTCTCCCCTTGGAAGG
6194267 29 100.0 32 ............................. CTCGGCCCCAGGCTCATGCTGCTGCAGCCCGT
6194206 29 96.6 32 ............................T CAGTGCCGCCGATGTTGACGCTTCCGCCGTCC
6194145 29 100.0 32 ............................. GAGGTCAGGCTGATCGGCCAGGGCGCCGGCAA
6194084 29 96.6 32 ............................T GGGGCCGAGCGAGTCGACCAGGCTGGTGGTGA
6194023 29 100.0 32 ............................. CTGACCCGGCGCCTGTGCGCGCGCCTCCCAGA
6193962 29 100.0 32 ............................. TACCTCGACCTCCGGTCCGTCGGCGCCGCCCC
6193901 29 100.0 32 ............................. GTGCCGGCAGCCACCCGGGACGCGCTCTCGAT
6193840 29 100.0 32 ............................. TCCACCGCCCAGTTCCACGGCGCCGACCCGGT
6193779 29 96.6 32 ............................G GTGTCGGGCGGCTCAGTCACTGGCGAGCAGAA
6193718 29 100.0 32 ............................. GTGCCGGCAGCCACCCGGGACGCGCTCTCGAT
6193657 29 100.0 32 ............................. TCCACCGCCCAGTTCCACGGCGCCGACCCGGT
6193596 29 96.6 32 ............................G GTGTCGGGCGGCTCAGTCACTGGCGAGCAGAA
6193535 29 96.6 32 ............................T GAGGGTGGCACGGCGCATGGAACCTCCTTGAT
6193474 29 100.0 32 ............................. CATTTCAGCGCCGCCCTCACGCCACCCGAAGA
6193413 29 100.0 32 ............................. CAGTCGTAACAGACGGCGCCGCGCACCGCGGT
6193352 29 96.6 32 ............................A GCAGCCCGCGCCGCCCAGCTCGGCCTCCTCGC
6193291 29 100.0 32 ............................. GAGCGCAAGGCCGTGGTCCAGCAGGCTGGCAC
6193230 29 100.0 32 ............................. GACAAGGGTCCCAGCATGCTTGCATGCTGGGA
6193169 28 96.6 32 .....................-....... ATTGGATCGCCGACCTGGTCGACCCCGAAGCC
6193109 29 100.0 32 ............................. GCGGCACCGGCACCCGCATCCACCACCAGCGG
6193048 29 100.0 32 ............................. CAGGGCAAGTGCTGCCGGCGCGCACCGCGCCC
6192987 29 96.6 32 ............................T CGTTGCCCTGCCGCACTGGAACGACGCCCAGG
6192926 29 100.0 31 ............................. CGGGTACCCCGCTTTCCCCGGCCGCCCAGAA
6192865 29 96.6 32 ............................G TCGAGGTCGGGGGCCAAGGCGACCAGCAGCAG
6192804 29 100.0 32 ............................. GCCGGCTGGGAGCCCACACGATGACCGCCACT
6192743 29 96.6 32 ............................G AACCGGCCGCCGCCGGCTGCCGCTTCAACTCC
6192682 29 100.0 31 ............................. CGGGAGCACGGCTCGCGCTGCAGGCGCAGCG
6192622 29 100.0 32 ............................. CCGTTGCACCGCATGTCGGTTGCGCTCATGCA
6192561 29 100.0 32 ............................. ACATCTGGTCCCAGTGGCTAGGCAAGCACACC
6192500 29 100.0 32 ............................. CTCCGCAGCTTCGCTCTCCACGGCCCGGCGGT
6192439 29 100.0 32 ............................. CCGCCTGGCTGCCCCCCGCCCTCCTCGCCGTC
6192378 29 96.6 32 ............................G GTCCGGCCGCCGGTCGCCCCGCCCGGGAGGTT
6192317 29 100.0 32 ............................. GCCGCAGGGCCCATCCCCCTGATGGGGGACGG
6192256 29 100.0 32 ............................. CTCTCCGCCAGCCAGCGCAGCGTCCTGGAATG
6192195 29 96.6 32 ............................G ATCACCGCCCGCCCCGTCGCCGCCGAGATGAC
6192134 29 100.0 32 ............................. TTCACGGCCAGGTCGTGCAGCATCGCGTGGAG
6192073 28 96.6 32 .....................-....... GGCTGAAGCCCGGGCATCTCACCTCCCGGGCT
6192013 29 100.0 32 ............................. GTCTCCTCAGTGGTGGAGCGGACGTGCTGCAC
6191952 29 100.0 32 ............................. CGGCCCCGGCCGATCCCGAGCCGCGAACCGCC
6191891 29 100.0 32 ............................. TCATGGACCTGTACTACGCCATGAAGTACGTG
6191830 29 96.6 32 ............................A ACGACGAAAGTCATTGTCGTCATCCAGCAGAA
6191769 28 93.1 32 .....................-......T GCATCGACCATCGACTGTGTGGTGACGACGGA
6191709 29 100.0 32 ............................. CCGCGACTAGTACGGCCATTGGGTTGCACCTT
6191648 29 96.6 32 ............................T GGCCATAGCGGGCGGCGATGCCTGAGTAGGTG
6191587 29 100.0 32 ............................. TGGGGGCGGACGCGGATGCGAGTGCTGATCTT
6191526 28 93.1 32 ........-...................G GCCAAGCGCGCGGTGTACCAGAAGCTCGGCCA
6191466 29 96.6 32 ............................G CGCCGGGCCGAGCACACCACCGCCCACGACGC
6191405 29 100.0 32 ............................. CCGCATCCCAAGTCGAGGAACTGCCGCATCCC
6191344 29 96.6 32 ............................G GGGTGCTGTATGACGCGCTGTCTCTCGGCAAG
6191283 29 96.6 32 ...............A............. CCCGTCCGGACTTTCTGCCGGCCGCCGCCCGG
6191222 29 100.0 31 ............................. CCTTTGAGGAGGGCGACGGCCTGCCGCCGCT
6191161 29 100.0 33 ............................. GCCGTTCGGTGAACACCCCCGCCCCTACCCCGG
6191099 29 100.0 32 ............................. GCGTCCGGGATCCTGTGCTGCCCGCGCCCCAA
6191038 29 96.6 32 ............................G CTGATTCGGGCCGCCAAGCGTGCCGGGTGGGA
6190977 29 96.6 32 ............................G GCCGAGACCGTCAAGGCGCTGGAGAAGGCGCA
6190916 29 96.6 32 ............................G GCCGGCCTTCCCCGCCCGGCGGCGGCGGCCAC
6190855 29 96.6 32 ..................C.......... GCCGAGAAGGGGCCGGCCTCGTCGACCAGCGA
6190794 29 100.0 32 ............................. CGCACGATTGAAGGCGATCCGGGCCAGCGCGG
6190733 29 100.0 133 ............................. GGCAGCGTGGGCACCGAGACGCTCCTCGGTTAGTCGGCCCCGCGCTCGCGGTGGTCCCCCACCGAGGCCCGTTGCACCACCCCGCTCGCGGGGGTGGTCCCCCACCGAGGCCCGTTGCACCACCCGAACACCC
6190571 29 100.0 31 ............................. CGTACTGGTGCGGAATCAGGAAAGCGACGGA
6190510 29 96.6 32 ............................A CTCACCACCGCAGGTCGGCAAGGGTGGCGAAA
6190449 29 100.0 32 ............................. GCGCACTCGCCGAGTCCATCGCTCGGCAGGAC
6190388 29 100.0 32 ............................. GCCCGGCCCCTGGCGTGGACCGGCCGCGCATC
6190327 29 96.6 32 ............................T CGTGGCGGGCTGCCGTGACTGCACCACTTGCA
6190266 29 96.6 32 ............................G ATGGGCGGGAGCTGCTGGTCGTCCCAGGCGTA
6190205 29 100.0 32 ............................. TTCGGCGGGCTGGCCATGGTCGCGGCTGGCAC
6190144 29 100.0 32 ............................. GGGCAGACCATCGACCAGCAGCTGGTGCGGTT
6190083 28 93.1 33 ...........C.............-... GGCATACCCGGCCGTCGACTCCAGCGGCATGGT
6190022 29 96.6 31 ............................T CGTTGGGCCCAGCATCGCCAGTTTGCACAGG
6189962 28 96.6 32 .....................-....... GGGCTGCTTGTCACTGCTTCAACGGCTGGCAC
6189902 28 96.6 66 .........................-... TGCCGACTTCCAGCGGCACACGAACTGCCAGTGGTCGGCCCCGCGAGCGCCAAGCACCGCATCGAG
6189808 29 96.6 0 .....................A....... |
========== ====== ====== ====== ============================= ===================================================================================================================================== ==================
77 29 98.4 34 GTCGGCCCCGCGCTCGCGGGGGTGGTCCC
# Left flank : CGACGTCAAGACCCTCCTCACGCCTGAAGGGAGCGACCTCCCCGACGCGGAGGTCAACGAACTCTGGGACGAGCACCTGGGTGCTGTCCCCGGAGGCGTCAACTGGGCAGCCTCCGCACCGCGGATCGACCCAGGCATGGGCGACGAACACATCGCCGTCATCGGCCCCGAGTTCGAGCAGAACCCTCCGGAGGCCTGACCACATGACCGTGATCATCCTCATCGCCGCCCCCGAGGGCCTCCGAGGGCACCTCACCCGCTGGATGGTCGAGGTCAACGCGGGCGTCTTCGTCGGCTCCCCCAGCCGTCGCATCCGCGACCGCATCTGGGACCTCCTCACCACTCGCATCGGCAACGGCCAAGCCGTTCTCGTCGAACCCGCCAACAACGAACAAGGCTGGACCGTCAGAACCGCCGGCAAAGACCGCTGGCACCCCGTCGACTACGACGGACTGATTCTCTCCGCCCGCCTGCGCCGATAGCACCGCAGGTCACGAAGT
# Right flank : CGATGTGCGAGGGCCCGCCTCGTCAACGGGGATCAGACCGATGCAGCCATCAGCACGAAACCTGGCATACAGGGATTGCGACTGTACGATCACTAGCCCGGCACATGGCAGTCATCAAATCACCCGCCCTGCCCAGCTTTGCCCTGCGCTAGTGCCGCTTCAGACAACCTTCGCCCTGTTGTGACGCGTCGTCCGGTTGCTGTGCCGGGCGGTACCGGACCGTCAGAATGATCACGTGGCTGAACGCGTGCAGGTCCGTGAGATCGATGATGCCGAAGGTAGACGGCTGCTGCGGATCGTCCGCCGGGGCACTGGTTCGGTGGTGACCTGGCGGCGGGCTCAGATGGTGCTGCTGTCCGCCCAGCGCATGCCCGTGGCGAAGATCGCCGAGGTCACGTTCACCAGCGCGGATCGGGTTCGCGACGTGATCCACAACTTCAACGCCGACGGCTTCGACTCCCTGTACCCGAAATACAAGGGCGGACGGCCGAGGACGTTCA
# Questionable array : NO Score: 5.92
# Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.88,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTGGTCCC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.37,5.28 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 6205104-6206962 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VIGB01000003.1 Kitasatospora acidiphila strain MMS16-CNU292 contig.1, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
6205104 29 100.0 32 ............................. CCGGTCACCCCCGACACCCTGGCGGACCTGGT
6205165 29 96.6 32 ............................A GCGTGCCGACGGTGCATGTCGATGCTGTCGCG
6205226 29 100.0 32 ............................. TCGACAGCGACTCGGGGACGTTGTTCACGCTG
6205287 29 96.6 32 ............................G ATGATCGGCCAGTTTGCCTCAGGTGTTACGTG
6205348 29 100.0 32 ............................. TCGGCGAAGTGCGCGCGGTACGGCTCAAGATC
6205409 29 96.6 32 ............................T GCCGTGGGGAATCCACTGGCCGACTTCCGCCG
6205470 29 100.0 32 ............................. GCGCTGGCCTGCTGGCAGGCGCTCGACGACGA
6205531 29 96.6 32 ............................T TGGCGAGGAGCGCGAGCCAAGCCTCAAGACCG
6205592 29 100.0 32 ............................. TCGGCCGGTGGTTGCGTGGACGGGTGGGAGAG
6205653 29 96.6 32 ............................T CACCCCGGCCGGCCCACCGCCACCGCCGGCAG
6205714 29 96.6 32 ............................T CACCCCGGCCGGCCCACCGCCACCGCCGGCAG
6205775 29 100.0 33 ............................. GTGCGCACCTGCGCGTCGTCGGCCTCGGGCTCG
6205837 29 100.0 32 ............................. CGCGTCCGTGGCCCGTGCGAGGAGCACCAGCA
6205898 29 100.0 32 ............................. GCGCATCATTGTCGGTCAGCAGGAGCGCACTT
6205959 29 96.6 32 ............................G TGCCGGCCGCGACCATGGCCAGCCCGCCGAAG
6206020 29 100.0 32 ............................. CCGAGGTTGGCGGTTTCCGCTCCTGCGTGTCT
6206081 29 100.0 32 ............................. GGGCCGTGGCCACGCCCGAGCGAGACGACGAC
6206142 29 96.6 32 ............................T TTCGGGCGGCTTTCGGGGTCTGGGCGCGCCGG
6206203 29 100.0 32 ............................. CGGCCCCCGGACACCATCCGGGGGCCGCTTCG
6206264 29 100.0 32 ............................. GCGCATCATTGTCGGTCAGCAGGAGCGCACTT
6206325 29 96.6 32 ............................G TGCCGGCCGCGACCATGGCCAGCCCGCCGAAG
6206386 29 100.0 32 ............................. CCGAGGTTGGCGGTTTCCGCTCCTGCGTGTCT
6206447 29 100.0 32 ............................. GGGCCGTGGCCACGCCCGAGCGAGACGACGAC
6206508 29 96.6 32 ............................T TTCGGGCGGCTTTCGGGGTCTGGGCGCGCCGG
6206569 29 100.0 32 ............................. CGGCCCCCGGACACCATCCGGGGGCCGCTTCG
6206630 29 100.0 32 ............................. GACGCCGAAGGCCGCCGCCCGGCCGACATCCA
6206691 29 100.0 32 ............................. CGGGGCGGCGACCGGGTGCGGGCGGCATCGAG
6206752 29 100.0 32 ............................. GGGAGGCGGGACGGAAGCACGCGCCGGAGGCA
6206813 29 100.0 32 ............................. AGCACTACCGCTCCCGACACGGCATCGCTGTC
6206874 29 100.0 32 ............................. ATCAACGGCCTCACCGACCTGTTCGCCGTGTC
6206935 28 72.4 0 ...............-T.TCA.C....AT |
========== ====== ====== ====== ============================= ================================= ==================
31 29 98.0 32 GTCGGCCCCGCGCTCGCGGGGATGGTCCC
# Left flank : CCGGCCCGCCAGCTAACTCGTCCAGCCGCCAGCGCGTCACGGGCGCCAGGTACCGATCCCACACCAACTCGGCCACCGCGGCGGTGTCCAGCATGTGCGACAAGAGAAGGTTCGTCACCCCACCAGCCCGCCCGGCCGACTTCCCCCACAACGCCGCTACGGCTGCCAGCACCCCGGGCTCGTAACGCCCCCACCAGTCGTCCACCCCGCACACCGCCCCATGCTCGATTCCGTGTGAAGCTGCAGCCACGTTAGGTGACGCATCTGACAAGCTGGGTGCAAGGTACTTAGAACTGGCGGCAACTGAATGGAAGTCAGGTATCCGATGGTCGAACATGTTAGTGTGCGCGGCGCTGAATTCAGTCAGAGCGGCCGGCGACGGACGCCTTGAGACGCCGGGGCGCGTGGGGTTGCCAGAGCAGTGGCGGGGAGGCGGCAGCTTGGCCCTCGAACCGAATGAGTCTGTGGCGGCGACGCGGTAAAGCCGCAGCTCAAGAAGT
# Right flank : TTGAGATGCCCAGGTAGGTGGCCGTCGGAGGCCCAGGCTGGTGGCCATCAGAAACCCAGGCGTGTGGCCAGTGGTGTTCCTGCGGGTGGGGTCAGTTCAAGGGGACCACTCCCTTCCCGGCGAGGGCCTCGGCGAGGCGATGCGAGTCGCCGGTGGTGGTCACGAGGTGAGCGTGGTGCATGAGGCGGTCGGTGCTCGCGCCCGCGAGAGTCTTCGGCATGATCGTGTCGAATCCCGAGGGGTGAATGTTGCTGGTCACCGCGATGGACCGGCGTTCGTAGGCGGCGTCGATGATCCGGTAGAACGCCTCGGCGGCGTCTTCGCCGACGGGCAGGAGGCCGATGTCGTCGATGACGATGAGGTCCGCGCGGCAGATCCGGGCGACGGTCCGTGCGGTCGACCCGTCGACCTTCGACTTCCCGATCGCGGCACTCAGCGTCTCCAGGGTGAACCAGGACACCCGCAGGTCCTTCTCGATCGCGGCCTGGGCCAGGCCCTCG
# Questionable array : NO Score: 6.16
# Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGGTCCC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.28,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 3 6209557-6210928 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VIGB01000003.1 Kitasatospora acidiphila strain MMS16-CNU292 contig.1, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
6209557 29 82.8 32 .C..C.GT.A................... CGCCCCGTCCGACACTGCTCCTGATGCGCAGT
6209618 29 100.0 32 ............................. GCGGTTTAGGGCAGCTGGAGTTCAGCCGGCAG
6209679 29 100.0 32 ............................. GACACCCGGCTCGGCCAGCAGCTCCCCGCGGC
6209740 29 100.0 33 ............................. TGCTGAAGGTGGGGGTCAACTGCGGGCGATGCA
6209802 29 96.6 32 ............................T ATTTGCGGCCTCGTCCAGCACGGCGCGCATCG
6209863 29 100.0 32 ............................. TTCGGCGGCCTGGTGTCGCAGCCGCTGTCGTC
6209924 29 96.6 32 ............................G CCGCCCATGAAGGACCGCCCCCCGCCCGCGCC
6209985 29 100.0 32 ............................. CTGCTGGCGTGGGGGTTCGTCCTCGCCGCGCT
6210046 29 100.0 32 ............................. ATGAACGTGTTCGAGAAGCCCGCCGAGGAGAC
6210107 29 96.6 32 ............................G TCTCCTGCGCTGCTTGGCATCTGGGCGAGACT
6210168 29 96.6 32 ............................T CAGCAGGAGGTGACACGCCGTGAGCGTGCTCG
6210229 29 100.0 32 ............................. CTGCCGACCTGGGGCACCGCGTTCGCACCATG
6210290 29 100.0 32 ............................. GTCAACGGCGGTGGTCGCTGGCTGGGTTGATG
6210351 29 96.6 32 ............................T CAGCAGGAGGTGACACGCCGTGAGCGTGCTCG
6210412 29 96.6 32 ............................G TCGAAGCCGCCTTCGGCGTCCGCTTCGTAGTG
6210473 29 100.0 32 ............................. CGGCTCGTCCTGCTGGTTGCCGTACCTGCGGT
6210534 29 96.6 33 ............................T CCGCGACTACCCGACGCTCCCCCAACTGCCAGA
6210596 29 89.7 32 A......G....................T CGGGAGCCGCCCGCCGCACCGCCAGCAGCCCG
6210657 29 100.0 32 ............................. CTCGGCATCGAGATCGACTACACCGTCACCTC
6210718 29 93.1 32 ...A....T.................... AGCTGGATACTCGTGGGGGTCACCGCGCCGCC
6210779 29 93.1 32 ...A...T..................... TGCACGGTGGCGCTGTTGAATTGGTGGTCCCG
6210840 29 89.7 32 ....CT......................G CTGTCCACCTGGGCCTCGCCCGGTCGTGGCTG
6210901 28 79.3 0 A..A.............C....-....TT |
========== ====== ====== ====== ============================= ================================= ==================
23 29 95.8 32 GTCGGCCCCGCGCTCGCGGGGATGGTCCC
# Left flank : CGCCTTCCACGCACTCTTCGCCGCGTTCACCGCCCGCCTCGTCGAGCGCGCGCTGCCCCGGTAGCCCATCTTCACGAGCTTCTCGTGGACCACATCGGCGCGGATCGTCGCCTTCGACTGCTCGACCCACTCCTCGACCTTCTCCAGGAACGCGTCGATCATCTTCGGCCGCGGCTCTCGCTCATAGGGATTGCGCCCGCTGTCGCGGGCCTCGACATACCTCTTGACCGTCTTCGGGTCGTGCCCCGCCAAGGTCGCCGCCGACCAGACCGTCCCGGTCAGGTCGTACGCCTCAAGGATTTCCATAATCTCCGTGTCAGACTTCGTCACAGGACCTCTCCGGCCGGTAGCTGATGCATGCAAACACCAGCAAACGGGCGGAGGGGTCTCCTCCAGTTAAGGAAGCGATCAGGAACACCACTGGTCAGACGGCCATCCACCTGGAATTCCGGTGGCCATCAGCCTGGACTCAGCTGGCCGCACACCTGGACTTTGCCACG
# Right flank : TTTGGGCTGGCTGGGGATGACGTGCAGCGCAGATGTTGAGCCCTGGTGATAGCCGGACTTGGCCCGATTGCGGCGGTGGGGACCGTACCCGTTGGGAACGGAAATCCCCGTGCTCGGCTTCGCGAGTAGATGGAGCGCCCATGTCAGCGTCTGACTGCCGTTCCGTCGCACCACAGAGCCTCACTCAGTGGAAACGTCAGGTAAACGGCAGGACGGTGCAACCCAATGCGGGGTGGTGCAGCACAAAACAGCTATCGCCCCTCTGACCTGCAACGCAGCGCAACCCGGTGCAGGCCAAAACGCAGTAGGGCGGGCGGGTTGATGACTCATAATCCCTGGGTCGTGGGTTCGAGTCCCACCCGCCCTACTCCGAACGCAGGTCCGGGCCCCGAGAAGGGGTTCCTGGCCAGGCGACACGCCTGGGGAGCCCGACCGAAACTGTAGGGCACGACGCGCCCGCGGCACGGTGCGCAACGCCGAGATTCACCCTACGGCGGACA
# Questionable array : NO Score: 5.70
# Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGGTCCC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [5-13] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.28,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//