Array 1 1864363-1865445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039139.1 Haloferax mediterranei ATCC 33500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1864363 30 100.0 36 .............................. TCCCGAGGAGTCGTCCGCGTCGACGCGGATGAGTTG 1864429 30 100.0 35 .............................. GTGCATCGCCGAGCGGTCGTTCGGGTCCATCTTGT 1864494 30 100.0 34 .............................. TGATGATGGGTCCATCACCACCCACCCCCTGCGT 1864558 30 100.0 35 .............................. AAGAACCATTGACTGGAACGCAACGACGCATCCTC 1864623 30 100.0 37 .............................. TGGGGATGTCTCGGACAATCTCTGACCGTGTGATAAA 1864690 30 100.0 37 .............................. TGACTGGAGAGCGTGCAACGGCCTATAAGATAGACCT 1864757 30 100.0 35 .............................. TCAACTGTCCCCTTGTCCGCTTCGTCGCCTGAGCG 1864822 30 100.0 36 .............................. GTACTTCTCTCCATCTTCGAGATTAGTGACGTTCAG 1864888 30 100.0 36 .............................. GTACTAAAGTGTGGCACGGAAAACACGAACAGCCCT 1864954 30 100.0 34 .............................. CCATCGTGGGTTGATTCGATACTCGACCGCAACG 1865018 30 100.0 35 .............................. TCGACTTGCGAGATAATGTCGTCTTGCTCGGTGGT 1865083 30 100.0 35 .............................. AAATATGATACCACCGAACCCGTTTGTAGCGCCCA 1865148 30 100.0 37 .............................. GTTGGTGCCCGCGCGGTTGGCGTAGGCAAGGTTCGTG 1865215 30 100.0 36 .............................. TGAGGTCTTCCCTAACTTCTGCATTGGTGTGTCCCG 1865281 30 100.0 37 .............................. AAACTCCTCGGCGTCGACACCGAGCGCACGATCGACG 1865348 30 100.0 38 .............................. CGTTTCCTCATCGAGGACTATTAAATCTCCTGACGAAT 1865416 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GGGTTATTGTCAAGCGTGTTGATAACGAACTTGTTGACCGTGTCGATATCGGCGTCACCGACGGCTTCCAACCCGTTCCGCAGGTCACCACTGTAAGCGCGAATCTTGGTTGCTATGAGGAACGCTGTTTCTAAGCACAGTTCTGGTTCGGTCGCTGCACAGTCCTCCATTATAATTGAGACGTGCGAGAGGGACTGGTAGGAGAGTGAATCAACGATACTCTGCACTTCAGTCAGTTTTTCTGAACACGACAGAGAGTCATCCACTTCGAGGTCTACGACGTGCCAGACGGGAAGTTCATTGTCCTCGGCCATGACTGGTAGTATAGTTGCCTATCTGATAGCTCTACTCCGAGAAAACCCGAATCTCGGAAGTCCGTTACGTGGGTCCTGACCTGAATTTCCGTCGACCCCCGGGGGGGTTGAGGGTTATTGGGGGTCGACGGAAACTGTTGAGTGTGAGCAGTGTGTAGGAGACTGTATGCCCTCAGATTGGGCATG # Right flank : CTTGCATCTCTTCCAGACTCTCCTCTATGCTCCGGTTACAGACGAACCCTTTCTCGTGAGGACTTCCGAAAATAGTCGATTCTCGGAGGTACCCTGACGGGCGACATCAGTGAATCCTTCGTGGACCGATGGACATCATCACCCAAGTAACGAGGATAATCACAAGGATGGGAAGCACGTCAACACCGGCCATCCACCACGGATTGACTGTTCGCGTCACGGTGACCGTCTCCTGATGAAACCAAACGTGTCTCGGTGGCGATGTTGAGAACCAAGAGACGCCGAGTGTGATCGAAACGACGACTGTGAGCACTGCGACTGGCTTCGATACGTGCTTGATAGCACCGAGCAACTTGCCACTCATAGTCGCTTCCTCCTACCTCGTGGTTCGTCGAGGCCGTCGCCATTCTCCCGAACGTGCATCCAGCCGAGCGCAGTTCGGAGGTAGTCAATATGGATGGCCATCTCACGATGAGTGCGTCCGGGGGACTCATCGGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1893996-1895338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039139.1 Haloferax mediterranei ATCC 33500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1893996 30 100.0 34 .............................. GAACAGGATGGCGAACGCGGTGTCTGCGCCAGTT 1894060 30 100.0 35 .............................. CACGACAATCAAGTCTGGTTGCATGGCGACACGGA 1894125 30 100.0 37 .............................. CTGTGGCCTCCAGCGGCCGTCAGACAGTCGCATCCGA 1894192 30 100.0 36 .............................. AAGAAGCCGCTCGCCGTCCTCGATGACGGGCGGGCG 1894258 30 100.0 36 .............................. GACAAGACTCGCGACGAAGCCGAGTCGAAACGCCGC 1894324 30 100.0 36 .............................. CTCTTTATCCCTCCTGCCCGAATGTCTACGAATATC 1894390 30 100.0 36 .............................. GAACCCACTGGTGAAGAAAAAGTTGTAGAGACCCTA 1894456 30 100.0 37 .............................. ACGACAATCAAGTCTGGTTACATGGCGACACGGATGG 1894523 30 100.0 36 .............................. TTCCACAACGTCGGGGAGGGCGAAATTAGCCAAGCA 1894589 30 100.0 35 .............................. TCCCGCTGGGGATGTCGGGAGTGCCGGGCGAGCCA 1894654 30 100.0 34 .............................. CCCGGCCCGTTGCCCCCCACGGCAATCGTCTGCT 1894718 30 100.0 34 .............................. CGTCTGTGTTATTCTGTGCGTCTGCCGCGACAAC 1894782 30 100.0 35 .............................. ATTGCCTGTCCCCGTCGTGTAATCAACTCGGAATC 1894847 30 100.0 35 .............................. GAGATGTGCGACCGCGGCGAAATGAGCAGTTCGTG 1894912 30 100.0 37 .............................. GCGACATGGGGACCGTCGAGAACGCGCTCTATGGGGA 1894979 30 100.0 37 .............................. CGAGGGTCCCGGTGTCGAGAGGACCGGGACGGACGGA 1895046 30 100.0 38 .............................. TCGGTAATCTGGGAGGCGTCAGTCTCGGCCGAGTAATC 1895114 30 100.0 36 .............................. CTCGCCATCGCCGCGAACTCGGTCCTCCTCGGGGTG 1895180 30 100.0 35 .............................. AAGCCTTGAGAGTGTCTGTTGGTATGATGAATGTT 1895245 30 100.0 34 .............................. AAGTAGACCGCGCTCAGTTACGACAGCTGCTCGA 1895309 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : GACCCAAGCCATAGCAGATTAAAATAATTCGAGTACTGTCCGTTCCAGATGTTGATGGTAAGTGAATATTCCCAACCACTCCTCTGCCAATGGCTTCTTTTTCCTGGACGCCTTCACTAGTCACATTCGTCCTTCCTGCTTGACCACCACCGAGAGCTACCAACACGACCCCGATAATTGCGGTCAGGACGAGATATAACCCAGAGTGTGTCGTTAGATAGATAGCACCGACAGTAATGATTCCCGCGAGAATCGTATAGATGAGGACTGTTACTGCGACTACTCGCTTGTCCATGTCATAAGTAGAACGACAGTTAGTTTAATTTTTATCATTTTGAGGAATTGGTGTATCGCGCGTCCCGGTGTTCTCGGAAGTCCGTTACGTGGGTCTTGACCTGAATTTCCGTCGACCCCCCGGGGGGTTGGGGGTATTGGGGGTCGACGGAAACTGTTGAGTGGGAGTAGTGTGTAGGAGGCTGTATACCCTCGAATCGGGCATG # Right flank : CACGATGATCTCGCCAGTCTGCAGCGTTACATTGGGTTACAAACGAATCTTTTCTCGTGAGGACTTCCGAAACTAACCTCTTCCCGGAACTAGTCGAAGGTCAAACAGTAACTACAGGGCGTGAGTGTATCAACTCGCCGCTATTCAACGACCTCGAATGGCGCGGCGAGTGCGATGCCTGCATCATGTTCGGAGAACCCCCAGTAAATGAATCGGTACGTGGCTGGTGTGTGTGCCGTACACCGTTGGAACGGACCTGAAAATTCGTTAGCGCTAAGTGTCATTTCCCATCGGAATTCTTCACCAGGCTCCAGCACTCGCTGAGACGGTGACCACTCATATTCTTCGGGCACACCGATGGTATTCCGCCACGTGTCGTCAGAGCTTAACCGCTGAATCATATAGCGCGGTTTCCCAAGTGTGGTGAGTGGGTCAGTGGACTCGTTTGTGAGTGTCGCCACGAATTGCTCACCTGGCGAAATAGATTGTGGCACCGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2737079-2738717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039139.1 Haloferax mediterranei ATCC 33500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 2737079 30 100.0 54 .............................. CACGTCAGGTCGTGTGCCTTGCGCGTTGCGTTGACTTCCGAGCGCACGCTCTTG 2737163 30 100.0 34 .............................. GGACCCAAAACCCCAATCGAAGACGCGACAGTCG 2737227 30 100.0 36 .............................. GTGTACGAGGTCGCCCACGACCGTGCCGTCGATGGT 2737293 30 100.0 36 .............................. CACGGATGGACGGCTAAGACGTAGTCGCCTTCGACA 2737359 30 100.0 36 .............................. GCGGACGGTGGTTCGGAATGACTGACTCTGCTAAAT 2737425 30 100.0 35 .............................. GGAGGTACAAAACGAGTCACAAAATCTAACGTCGG 2737490 30 100.0 37 .............................. GGGGAGTGGGAGGTGTCGCAGACCCGACGGCCCGCCG 2737557 30 100.0 36 .............................. TTCGACGCGAAGGTCGTACACCTGCCCGATTTGGAC 2737623 30 100.0 35 .............................. GAAGATTATTGAGGGAGTAACGTATGAACCATCTA 2737688 30 100.0 38 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGTC 2737756 30 100.0 38 .............................. GACCAGACCCATGTACTCCGCAGACCCGGCCTTCGCGT 2737824 30 100.0 35 .............................. CGCGAATGCAACAATCGGCGTTGCATGCATGACGT 2737889 30 100.0 37 .............................. TTGACGAGGGGACAATCCATGAAATCCATGTGAAATT 2737956 30 100.0 36 .............................. ACGGTCTCGAAATGTTGCCCGACCGGAACGCATATC 2738022 30 100.0 37 .............................. CGGTCCTCCGGCAGATTGGGGAGATTTATCCAGAGGT 2738089 30 100.0 38 .............................. ACACGGCATGGGGGGAAGGATTTGGGGGGGTTGTGAGA 2738157 30 100.0 34 .............................. GTCTGGAAGCTGGCCATGTTGTTCTACAACGCTT 2738221 30 100.0 36 .............................. TACGTTGGGGCAGACCCCAATTCCGGAGGGTCGCAG 2738287 30 100.0 34 .............................. CGTGACAGTCTTCGGGCCGGTCGACGACCAGGGC 2738351 30 100.0 35 .............................. TTCTGGACGCACCTTCTTCACGTCGTAAACCCCGG 2738416 30 100.0 34 .............................. AGCAGTCAAATACCGAACTCGCGCTTGAAAATCT 2738480 30 100.0 35 .............................. GCGGAAATCGTAGTCGAACCCACGCCCGACGACGA 2738545 30 100.0 36 .............................. GTGGACGGGGACGAGTCTATCACCATCGACAGCACC 2738611 30 100.0 47 .............................. GGGCGCGCCAGTGAATTTCGTCGTCATGTTACATTCAAGAGCAACAG 2738688 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================== ================== 25 30 100.0 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ATCACAGCGTACCACCGATATCTAAACGAAGCGGCTGCACTCCACTACAACGATGGGATGTTCGACGAGTTCCTCCGATACGGCGACCAAGACAACTACGCTGGTCCCGATGCCCTTTCGAGATGGTACCGGCGGAACCTCCGGATGATTCACAACATCTGGCGGGCCGTGGACGAAGACACTAACCGTGTTTGCTTCGTCGTCGGCTCCGGACACGTCCATATTCTCCGGCAACTCCTCACCGAGTTCCCGCAGTTCTGCCCCGTGAGTCCGCTTCCGTATCTGCCCCGTGGTGAGTAAGCGGGTGTTGAAGATGGTGACGAGTGGATAGTAGTTGACTCGGGAGGTTAGGTGTGGTTGGTGGGTTCGAAGGGGGTGTCCGGATTGGCCGGATAGGCATTTCCGTCGACCCCCCGGGGGGTTGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGCGAACCGCCTGTAGAGTACTTGTGGCACTCAAATCGGCCATG # Right flank : CTCTGGGTCGACCGGCATCAACAGCTCGGTCTACGGTTACAGACGAACGCCTCTGTTTAAATCCTCAGTAATTGATACAAACTGTGTGCTGAATATAGAGGGTGCATTCAGCAACTCCACGACTGGCTGTAGGAGACTCTGATGGAGAAGCACGACTGATCGTGCTGAAATCGGAGTAGGATACCAACCTCGGGTTATTTCAGGACGTGATACATTGCGAAACTGGGAATGCGGGTATTCAGATGGGTGGTTAACCGATACAGACAACTCGAAAATATGGCGTCACACCCTGCAGTAGCTGGAGGACCTGAGATTGCAGTTGACCTGACTATCGTACTGGGTCTTTGGTGCCTCTGGGTACTGATAAGTAGGGGTGTAGGTGCGGCTTTAGATTTCACTCCACTCATACTCATCCCACTTGGTACCGCTATTGCGTTTCTGCTCATTGATACAGTAGTTAGTCGGGTATTTTGACAGAGGCACGATGCAAACAGTGGACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 263339-261859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039140.1 Haloferax mediterranei ATCC 33500 plasmid pHME505, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 263338 30 100.0 35 .............................. ATCCGGTCCCAGTAGAGCGCGTAGACGCCGAGGGC 263273 30 100.0 37 .............................. CTTTGTCGGCGAGGACGAGCGCGCCGGCTTCGAGCGT 263206 30 100.0 35 .............................. GAGCTTGTCGAAGACGATTGGGTCGCTCACACTCC 263141 30 100.0 34 .............................. CGACAATATTCGACCAATTGGACATATGCATCCT 263077 30 100.0 37 .............................. GCCCGTTTAACTAATAATGTCATGGTTCGGAAAGCGG 263010 30 100.0 36 .............................. TCGACACGACAACACGACTCGATTCGCCGTACGACG 262944 30 100.0 36 .............................. TACACCGGACCCGAACTCGACGTGCACGTGAAGCCC 262878 30 100.0 36 .............................. TCTACCAACTGGTTGGGTGCTGCTCGGATATCTCTC 262812 30 100.0 34 .............................. GACCGGGACCCGTGATGCTCGACAAGGTTGTAGT 262748 30 100.0 36 .............................. ACGCTCGGTCCCGGCGAGACGGCGACGTTCGCGCCG 262682 30 100.0 36 .............................. TAAACGCATCTAATGAGTTATCAGACTCGTGGACTG 262616 30 100.0 39 .............................. ACCTCATAGCGCGGGTCCGCCCGTCTGGGTTGGCGTCTG 262547 30 100.0 38 .............................. CTTGACAACGGCTTTGACGGTCGGACAATGACCTATCC 262479 30 100.0 37 .............................. TGTCGTGACTGCGCCCACGTCATCACTATCGGTGATT 262412 30 100.0 34 .............................. CTCAAGAGGTGGCTCTAATGGGAATCAAGCAGTT 262348 30 100.0 38 .............................. AGCGTCGACGACGTGCTCGACCGACTGGAGTCTGACCC 262280 30 100.0 36 .............................. CGCGCACGGCATCCACGTCGACGAGCGGGACGCCCG 262214 30 100.0 38 .............................. ACGTCCTCGGTAGGATGTTTCGCCGCGAGACTCTGCAA 262146 30 100.0 34 .............................. GGGAACCGTTGAGGTCCTCGTCGATGATGCGAGC 262082 30 100.0 34 .............................. ATCGACCGGAACACGCGAACCACGCTCGGCGAGC 262018 30 100.0 35 .............................. ACTCCAACGAGTTCATTAATCCCGATGGGGAGGAG 261953 30 100.0 35 .............................. TTACAGACGATTCGGTCGACAGAACCCTATCGCCC 261888 30 80.0 0 ..........C.....T.CG..A.....T. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.1 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CTCGAACAGACCGTGGAGCATCCCCGACTGAATCGGAAGGTGAGCTATCAGTATCTCCTCAGAATTGAAGCGTACAAACTGAAAAAGCACCTCCTTACGGGAGAGGAATATGTACCCTTCAAGCGGTGGTGGTAACCCGTGGTGTACATTATCGTCGTGTACGACATGCGGGCCGACCGAACGCGATTGATGCTCAACTTCCTCAGAAAATACCTCACGCACGTACAGAACTCCGTCTTCGAGGGCGAGGTCACGGAGGGTGATCTGGAAACGATTCGGAACCATACGCAAACGTTACTGAACCCGGACGAATCGACGATTATCTACCGAATCGGGTCTGAGAAATACGTCGACCGAACTGTTATCGGAGAGGACCCAACTGACGAGTCACGGTTTCTGTAGCAGTCGACCCCCCGGGGGGTAGAGGGGTATTGGAGGTCGACGGAAACACTTGAGTGGGAACCGTCCGTAGAGCACTTGTGGCGCTTAAATCGGCCATG # Right flank : CCGATTCCAAATGTGACAGGAGGAAATTCAGACCCATCGGTAAACTTTAAATTCCGTAGTCTGAATACTCTTCCAGTACATCTATCGTATAGAGTTTCGTTCTAAAAAACGACAGCCGGTCCAGATGGGTGTTTACTCCCCTTCTTTGACTTCGTAGATCTCGTCGGCGGTAAAGCCGTGCGCTTCCCGGTGGACTTTCTCGCCTGCCTCTTTGTTCGGCGCTTCAAAGAGGCAGAAGACCGCACCTTCGTCCTCGTCCAGCCAATACTTCTTGTAGTTCACCCCGTACTTGTCTTGAATTTCGAGGTCTTGCCTGTGCGCCTTAACTGCCTCCTCAGCGGTGAGCCCCTCTATGTCCCTGTGAACGTCCATGAATAATGGCATGGTTGTTGTAGTGTAGCACGTCTCACACCATAAATACACATTAATAATTGTATGAATGTAGTCACAGATATGACTGAGTTCATAATCCTACCACGGATTTGATGGCGGGCAGGTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 273483-274173 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039140.1 Haloferax mediterranei ATCC 33500 plasmid pHME505, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 273483 30 100.0 35 .............................. AGTCACATGGGAATCCGGGCGCGACGGTCTCAACT 273548 30 100.0 37 .............................. CGGAACCGAGGGACGCCTCGGCACGCCCCCTGAGAAT 273615 30 100.0 35 .............................. AGGTCTCCCCCATCAACCGAGAGTGTTACGTCGGT 273680 30 100.0 35 .............................. CCGAACCGGGTGCCAGCTCATTTTGGAACACCCCC 273745 30 100.0 35 .............................. CTGCTCCCCATCGGGATTAATGAACTCGTTGGAGT 273810 30 100.0 36 .............................. TTCTTTATTCCGCCGCTCCGAACGTCCACGAATATC 273876 30 100.0 38 .............................. ATCCCGCCGAGAAGGTGGCAGGCGCGCAAGAACGCCTG 273944 30 100.0 36 .............................. CGACTGCCGGAGGACGTGAACGAGATCGTCCATGCA 274010 30 100.0 36 .............................. GACATCGTCGAGTCGCCTCTTGAGACCGCCGCTCAG 274076 30 96.7 38 .................G............ GTCGCGAACACGTGGCACGTCGTGCCAATCACGGCCGG 274144 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.4 36 GTTACAGACGAACCCTAATTGGGTTGAAGC # Left flank : GAGAGCCGTTTGTTCGTTTCATGGTGGTCCATGCGTAGCTAACCAAAAGCCATAGATGCGTAGACAGCAAATCCGGCTATGGTTGCTGCCCTACACTTGGCAGTGGCTTATTTGTCACGCCCTGCCCTCTTGCACAAGTTTGGGGCGTGACTCAGCTACGCACCAGTGACAACTATTCGCATTCTCTTAACTCTTACTAGCGTGTTGTATGAAATTGTATCAGTAGATCGGGAGCCAAACATGGCCAGAGAAACCACATAGAGCAACAAATCAAATGATATCCAGAATGTGATTCCAATACTCAATCCTTGAATGAACACCAGCCAAGTAGTACTCAAATGAAAGAATAACCAACTCAATTGGTCAGAGAAGACCGTTCGAGTTGGAAGCTCGCTTTCGCTTCCGTCGACCCCCCGGGGGTTCGGGGGTTATTGGAGGTCGACGGAAACTGTTGAGTGGGAGCAGTGTGTAGGGGGCTGTATGCCCCTGAATTGGGCATG # Right flank : CGAGACCAAGGTCACGGACAGTGACGTTAGTCGTCGTTACAAAAGAACCACTATCGACAGGAACAGCAGCGAGAGCGCCCCCACTAGGAAATACCCAGTAGCGTCAAGTACACTCAACACAGCGATTGCTAACGCGATATAAGCCGGGTTCCGGGAAACACAGTATTACTAACCGGAACCAACACCGTCGCTCGAAATCCCTCAAAACGCCGACCGAAACCGACGACCGGAGTCGTCAGTTAGCCAGCGGGACCTGCATCTCGCGTTCGGCTTCGTCGTCCGCGTCCACAGTTCCCTCGGCGAAGACGACGCCGTGGGCACCTTCTCGTTCTTTGGCGCTCGCCGCGACGCGGACGAACGTCGCGTTGTCGCGCGCGGCGGAAATCGTGTGGCCGCCGCAGTAGCTGATTCCGGAGCGAACGCCGCCGAGGAACTCCTCGACGAGCGGTTCGACCGAACCTTTGTAGGGCGTGAGAGCTTCGACGCCCTCGCCGGTTGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAATTGGGTTGAAGC # Alternate repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //