Array 1 435-826 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000102.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 435 26 100.0 35 .......................... CCGCGGTCAGCAATCAAAAGATATTTATGACACGC 496 26 100.0 35 .......................... CCGTCCGTTTGCCCGTGAATTTAGTAGCGGGCTTT 557 26 100.0 35 .......................... CCGATGTCAATTGTAGCTAACCTTGCAGGAATTAA 618 26 100.0 35 .......................... CCGTACGCACCCTTCGATCGGTTTAACCCCTGCCC 679 26 100.0 35 .......................... CCGACCCATGATTTTTCATCAAAATCAAATCTCCC 740 26 100.0 35 .......................... CCGCGAGGTGGAATTCATACATCCTGTTGTTGGTT 801 26 96.2 0 ...................C...... | ========== ====== ====== ====== ========================== =================================== ================== 7 26 99.5 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACCGAGCCTTACCTCCGTGATTTTGCCTTAGACGTGGTGGACGAAGCGCACGAACATGTCAAAAGCAACTGGCAACTAGAAAAAGAAGAGCGCATTAAACCGTTATTCTGTATTAAACAATCGATAATAATTCAGAGGATAATAAACCTTGTATGATCGTAATTGTGTAAAAAACACACCATAAATAAGTAGGGAAAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGAG # Right flank : ACTGAATATGTAACTTGTTCTCCTAAACTAACATTGCTAAAAAAATAGGCATTGATTCTACAGTCAAAAAACTTTGCCATAAATATAGAATCGGTACCTCAATTTTTCTATAAATGGCGAGAAAATACAGTGAAATGAAAACATCAGAAATCAAACTTTTAAAAGAGTAAGAAACAAAATCGAAAGTTTAATATGTTTATATTTTTCAGCTAATTATTGATATGTAAACTATTGACATAGTGACGAAACTGTATTTCCAAGGCAATTAAGTATATAATACCTTGCAAATTCAATTAATGATTATTACTAAACTTATACTTTTATGAAATCTTCAATTATCAGTAAGTTAGAAGCTCTACAAGAGCGTTATGAAGAGGTTCAAGCATTATTGTCTGACGCATCAGTTATCGCCGATCAAAATCGTTTTCGTTCTCTTTCTAAAGAATATTCACAATTAACCGATGTCGTTAAATGTTTTACTGGCTGGAAACGGACGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66862-66469 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000110.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 66861 26 100.0 35 .......................... CCGAAAATTTAACGGGTAAAGATTTATTGTGCGGT 66800 26 100.0 35 .......................... CCGAATATCAATCATGCGGTTAGGCTATCTATATA 66739 26 100.0 35 .......................... CCGGGATGAATAAAACCCAAATAAAGCCTGTAAAA 66678 26 100.0 35 .......................... CCGTTATAGGAAGTGGACACAATGGTACTATGTGT 66617 26 100.0 35 .......................... CCGCAGCTCATCGGCATATTGAAAATGAGTTAAAT 66556 26 100.0 36 .......................... CCGTAATTAGGTATATTATGAGTCAAAACCACAAAC 66494 26 92.3 0 T..........T.............. | ========== ====== ====== ====== ========================== ==================================== ================== 7 26 98.9 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CTAATTGAAGAAGTACTATCTGCAGGGGGGATTGAACCACCCCTTCCACCTGATGACATACAACCCCCTACCATCCCCGAACCACAATCACTTGCTGATAGTGGTTTTAGGAGTTACTAACTATGAGTATGTGCGTTGTGGTTACCGAAAATGTGCCACCTCGATTAAGAGGTCGTTTAGCTGTATGGTTATTAGAAATTAGAGCTGGTGTTTATATTGGTGATGTACCTCGCCCCATTCGGGAAATGATATGGCAGCAAATCATTGAACTAGCTGAAGAAGGCAATGTTGTCCTTGCGTGGGCAACAAATACCGAATCTGGATTTGATTTCCAAACTTATGGTACAAATAGAAGAGTTCCGGTAGATCTGGATGGGTTAAGATTAGTTTCTTTTTTACCTGTTTAAAATCAATAGGTTAAATTTTTTTAAAATTTTCAAAAACCTGGTAGAATTTATTCATTGCTATAACTCTAAATAAAACAAATAGCTACATTTAGA # Right flank : TTCTAAACAACATTAGTTAAAGTTGCTCTAAAATGGCAACGATTTGACCTTGCAAACCTTAAAATTTTTAGTGCGGTTTTAGGTGTTTGAAATATTAATGCTATTTCTTTCTTCAATGCTTGAAATGCCTGAAATTAAAACCGCACAAAACATCGTTAGAGGTTGTCGTTTTGCTATTCTTAATAATAAACAAACCGTTGTTATTAATAGTCATGTCAGCAAAGGGACATTATCTATTTTAGTTTTTAGTTATTTTATGACCAAAATTAATGCCTATTCTTTCAATGAAGTAATAGGTAAAAATGCTAATCAATAATGTTATCAACATGGATACAAGGCTATTTAATAAAAAGTTTCCGCTTTTCATTATTACGCCGTTTATTAGAAATAAAACAAGCCCATGTATTAGATAAAAACTGTAGCTTAATTTACCTAATGTTATGAAGATTTTTGATTTGAGTAGTCCAAATACACTATTGTTGCTTGCAATGAGAATAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17164-17305 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000027.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 17164 26 96.2 35 A......................... CCGAGGTGATAAGGTTCAATTCTTGTCCATTAACC 17225 26 100.0 29 .......................... CCGTAGACAAATTGTAATACCTCAAATAA 17280 26 84.6 0 .A...................TGT.. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 93.6 32 GCGTTCCCTGTATACACAGGGATAAA # Left flank : ATAGCAAATTGGTTTGTACCGGTGGTAAATTTCAAAAAATTTGATATAATGCCGATTTTTTAAGCCCAAGGAATTTAACGGCGATGAAATATTGTACTTTGTGTCAAAGAAATGTAATACCAAAAAGAAAAATTGGAACGGGAACGCTTATTGGTATTATTTTTACAGGCTTTATTTGGGTTTTATTTATCCCTTTTTACAAAAAAAGATGCCCACTATGCCACGGAGATAGACTAGTTAAACCTGAGAAGGTTTTGCAAAATTCAAATAATCATCAAGCAATTCAGAATCCGAATATATCCGTTTCTGATGAATTGAAAAAATTAAATGATCTAAAAGAAAGCGGCGTTTTATCGCAGGAGGAGTTTGAAAAACAAAAAATAAAATTACTGAATTAATGATTAGATGCCGGTTTTCGAACCCCTGACGCCCAACAAATAATAGTTGACTCTGTTTGTATCTTAGTATATCTTCAAATTACCTACCCAGCATGGGTGGAT # Right flank : ACCCCCCTCTTTCGAGGGGGTTTTATTTAACGGGCTTTATTTTGCGTCGCCAATTCATTAATGGCTGCCGCTGCCAAAAAATTACTCCGATCCCTATAAACCGAGTTCGGCGCTTTAACTGCGTTATCTATTCTATCGATCAGAATATCTGGCAATGTGATATTAATTCTTTTTTGTTTACCAACAAATGATGATAAATCAACGTCAATAATTACCCATGTATCGCAATGAGAATATTCGTCGTTATTTTTATATGAAACATGATCGTTGTGAATATCGTTAACATCATAATCACCTGATTCAATCATATCCTGAACAGTTAACAAAATAGCCTCAGTTGCCATTGCTGGGATGTCGTGTTCTTTGTCGGCGGCAGAATAACAACTATATTTTTCATTGCATAACGCAGGCACGACAATGCCGTAAGCGGTATCGCTATCGTTCGGGGTTTCAATGCCAAGAGTAAAAAACATAATACCTCCAAAAGTTGGCGGGCTATA # Questionable array : NO Score: 3.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44266-44413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000028.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 44266 26 100.0 35 .......................... CCGCTACCGCCTATGCCAGTCAATCTTGCCAATCA 44327 26 100.0 35 .......................... CCGACAGAAAAATACGAGATCGCTAAAGTCAAAAT 44388 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== =================================== ================== 3 26 96.2 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TATAAGTAAACTAATACAAGTTAGAATATTCCTAAAATTTGCAAACATACCACTACTAATCTCTAAATATTGATCGTTATAGGCATAGGAAGATTTTATTGGTTTGAAGTTATTATTGACGGATTCTTGAGTATAGTCTTTGGGCTTCTTTTGGCGTCATATTATCGCTAGTATAGCCCATTTTCAATTTTTTGTGGGGTTTGGGGTTTTTAAGCCTTGAGAGTACAAAGACTATTTATCCGCATAATGTTAAAAATATCGAAAATTATAACATAAAACTGGGTAAAATTAATATTTGTTTTTATTTAGGGAGATGTAATTTTCGTATCTTGATGAATTTATATTAAAAATAGAGTCATTTTGGTAGGGCGACATAAATTGAATTGAGCTTGTTTTTTATTTTTTAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : CCCTTTATCTTAATGCTAAAACCCTAACCCCAGTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAAGTTTAATTAAATATTGCAAATTATGTAAAAATCGTGTAATTTTATGCCTGATTTTAGTTATCATTATTGATTATTAAAATTACCGATAAAAATAGGTAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTAAAGGAAAAAAAATGGTAAAACATTTAGATAAAATCGTCGAACAAGCAGGACAAGCAGGGAAAGACTTGCTTAGCCAATTAACAAATAAAGTTAGCCACAACCGTTACACACTAACCATTGATGAACTCAGCGCTCCTATATCGGTGTTAAACGTCAAAGGCGAAGAGGCCTTAAACCAGCTGTGGCATTACACCATTACTTTTACCAGCGCCAATAAAACCCTATCTACCGATGCTTTTTT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28601-29115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000056.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 28601 26 100.0 36 .......................... CCGGGAATATTGAATTCTTGCATTTGATGAGTTTTC 28663 26 100.0 35 .......................... CCGCCCTTTTTGTAGTTTGTGAAAACATTTGAACC 28724 26 100.0 35 .......................... CCGCCCAGAATTGGTCAATGATGCGTTAAAACTAC 28785 26 100.0 35 .......................... CCGGTTTTATAGAATTAGACAATTTTGATGTTGTT 28846 26 100.0 35 .......................... CCGCGGAAAATGTATCAGAAATAGCGTGGCGAAAA 28907 26 100.0 35 .......................... CCGGATTTAAATCCATGTACTCACTACTAAAAAAT 28968 26 100.0 35 .......................... CCGAGTTGCTCAACAAGTAAAAAAATTAACTTATC 29029 26 100.0 35 .......................... CCGAGGTGATAAGATTTAATTCTTATTCATTAACT 29090 26 96.2 0 .C........................ | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 99.6 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TCCCAAATCACCTGTTGATTGCGAACGGCGATCTTCAATATTATCACTCTCTCTTTGGTCTCTCCAACGCATAGTAATTATCTCATCAGTTTTGGTAAGTTTATTTTAAAGGATAATAGAAAAGGATACTAGGTTAAAGTTTCTACAATTTTGGTGTGATTTTGATTTTATGCGTATTACGTTTTGAGCATAAAAATTATTGTTAGTCTAAAGATTAACCCTTACGAAAGTAAAACCGATTCCTTATTAAAAGGTCAGAAACTATAACCATAAAAAAATCGGTAAGAATTAATATTTTTTTATCTAACTATTGTTTAATTTACGTATCATGATGAATTTACATTAAAAATTGGTACATTTTGGTAAAACGACATAAATTAAAGTAATCTTACTTATAGTATATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : ATTCTAAACAGCATTAGTTAGCGTTGTTTTAAAATAGTCATGATTGGATGCAGCAAGCTTTAAATTCTTTTGTGGTTAGGTTTTGGACGTTTTAGTCTTTAGTGACACTAAAATGAATGTAGTGTTCACGTCCGAGTAAAGGAAATTTAGCGTGAAATTTCCTTTACAATCCTAAGTTTGCCGCCAGAAGTACTGGTCACTGCGTGACTGCCCTCGCTTTGTTAATTAGCATTAAACGAACCGATGAGTATTGCACTTCCTTGTGCGCCCTCATCTCATTTGGCATCCTGCCCAATGTTCTATGCTAATTAACTCACTCGGCAGTACTTAAGCGGAAATACAAATTCAATGATTTAATTAGATTTTTAACATCATTAATAAAAATTTATTGTCTATCCACTTAATAATTGTTTGTGCTAATTCCGTGCCATACAAAGTGCTGACAACTAAGGCTGGTTAGCAAGTCAAACAAGGCGGTTTGGCAAGTTCGTGTTTTGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1856-2186 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000067.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1856 26 100.0 35 .......................... CCGGATAATACAATAAAAGAAATATGTGTTAATCC 1917 26 100.0 35 .......................... CCGCTCAGCATAGCGTTCGACAGTTACCCAAGGCC 1978 26 100.0 35 .......................... CCGTATTAGCAAGTACGCCAATAGTACGAACAAAT 2039 26 100.0 35 .......................... CCGAGATAAGCAGCGTTGCTATTTGAACGGCGTGT 2100 26 100.0 35 .......................... CCGATTATAACTATCAGCGTAGACGTGTTGGAGTG 2161 26 96.2 0 .....T.................... | ========== ====== ====== ====== ========================== =================================== ================== 6 26 99.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACTAAAATCAGGCATAAAATTACACGATTTTTACACAATTTGCAATATTTAATTGAAGTTAATTTATTGAAATTTAAGATAAGCTTAGTGAGTCATGTTTTTTTAGGTTGCTGCTTTTAAGCCCACTTAAAATTTTATCAATTAAGTGGGGTTAGGGTTTTAGCATTAAGATAGAGGGAATATCTTTTCGTAATCAGGAGTAAACCACCAATAAAAAAGGGAATTAATCTAAAACAGTTATGATAAATCTTGTACCAATACGAAAACAAAAGGTGATGTTTTTTATTTAGGCTCAATCAAATGCTGCATCTTATTGAATTTAAAATAAAAAAATTTTTTTATTGGTAGAACGGTAGAAATTAAAACAAGCCTACTTATGACTTTTTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTATCAGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : ATTACCCTAGAATCTTTCACATTCGCTTCAATTTTACAAAAAAGCGGAATATTGCTATACTTATCTACTTAATTTCCACGAAAAGGAATTGTTTTGTCGATATTCATTTAAAATTTAACTTACCGACATAACAACAGTTTTTGCTTTTTTATTATCCTCTATTTTTTATCTTTGCTTGATTTTTCGTCAAATTTAATTAATTGAAACACATAGTTAATATGTAATTTAAAACGTATTTATTCTGTATTAATAAGTAACCGATTTATTTTGTTGCATTATTCCTTTTCTTTTATTTGCATAAAAAAAGGCGGTATTTTATGAATAAAACAATAGACTCTAAAAATAAACCCTTAAGTATAAATGATATTACCATTATTGATGATAGTAAGTTAAAAAAAGCGATAACCGCAGCAGCACTCGGGAACGCTATGGAATGGTTCGATTTTGGGGTTTATGGTTTTTTAGCTTATGTTTTAGGGCAAGTGTTTTTTCCTGATGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20644-20069 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000067.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 20643 26 100.0 35 .......................... CCGCGAAAACGCCCCAAGAGGCGTATGACAATCTC 20582 26 100.0 35 .......................... CCGTAAAAAAATATCTGACCGACAGCTGTTAAATA 20521 26 100.0 35 .......................... CCGAATATAATTATTACAAGTACCAACTTAATATT 20460 26 100.0 35 .......................... CCTTTAAACACTCCACTACTTTACTCGATGCTTCT 20399 26 100.0 35 .......................... CCAGCTCGAGCAGCAAGCCCAACACGTTCGAGTGC 20338 26 100.0 35 .......................... CCTCCATCTTTCATGATGTAGTGTGTCATTTGCTG 20277 26 100.0 35 .......................... CCGGTATCCGTCATTTACCGGGTGATATCATTGGT 20216 26 100.0 35 .......................... CCGCGTGATGTTGAATTGAAGGATGATTCTAATGA 20155 26 100.0 35 .......................... CCGCTGGGAATGATTCCGGCAATAAAACGGAATAT 20094 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 10 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AACTTAACAGGCTATGCTGGAGGCATTGATAAAAAAATTAAGCTACTACAAATTGAAGGCATTGATACTCAAAAATTTTATCGCCCAACTAAAGGAACAGCACTTTAAAACAAAAATATAATTCAGCAAACTATAAAGAGAAACAGTAAATATCTACTTTAGAATATTTTAGCTTTAATTGAATAATAAATATTAAATGATCGCCAGATCGGATTAATTAATATTTTTAGCATTTATACCGTTAAAATTAAAAAGTTTCTTAATTTTCAAATTGAAACAAATATTTTGATTAAAATTTTTTATTTAGATACAATAAAATTTAAATATCCTATTGAATTTAAATTAAAAATTGGTGATTTTTGGTAGAATAGCATAAATTGAATTGAGCTTGTTTTTTATTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTCAAAAAATCTGGTAGAATTTATCGCCTACTATAACTGTAAATAAAACATATAGCTACGATTAGA # Right flank : CCGGCTTTGCACAGCTTTCCAATACCATTGTCAGCAAATGGTTAAGGTGCTAGCTTCTTTGTTGATTGGTTATGAGTTATATTAATTAAATATCACACAATGCGCTGACAACTAAAGTTAACCTGTCAAATACGAACATTTGATAATGTTCATGCCTTGTTTAGGAAAATCACAAATGATTCGAAAAACTGGACGAGCATAGAAGAGGCAATTTCCATGCGACCACTTTGTTTCTAGCATCTGCATCGAGATTGTAAAGAAGGTTCGCCAAACTCTCTGCTCAGACATTACCAAAAAATTAATTGTATTTCGCAAAAGATAAAAACGCCTCAAATCCTAACTGTACTGAAAAATTTAAAGCTTACAGCACCAAATGGTTGCCATTTTAAAACAACGCTAACTAATGCCGTTTAGAGTTTATTTCTGTATATAGAGAACACGTTAATATGGTTATGAATAAAAAAGGATGCTCCTTGATCAATAAATTAATTATTTTCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35822-35613 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000080.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 35821 26 100.0 35 .......................... CCGCGCAGCTCAGCACAGATGGAGCTAAAGCAGGA 35760 26 100.0 35 .......................... CCGTCTTTTATGCGTTCTAATTGTTCTTCTAATGT 35699 26 100.0 35 .......................... CCGCAAGAATCGAAGTAGATAAATCTGAATATGAA 35638 26 88.5 0 ......T..........G.A...... | ========== ====== ====== ====== ========================== =================================== ================== 4 26 97.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCAAGGTTGGCCCGAATGGATGGTCGAAGCGTTTAATGCCACATCGCAAGAAGAGCTCGCCGAAATCAAACAACGACACCATATAACGGAATAACCCAGATGATTAAGGAATAATTATGCCATCAAAATTCCATAAACACGTTTAATAAAAAAGTTTTGAATCATAAAAGCTTATTTGCTTTTCTAAACAAAGTTTATAGTAAAGGAAATAAACCGCTAATCCCAAAAGTTTAAAACTTAAATTCAAAATAGTTATGACAAAGCTCACGCTATGATTAAAGTAAAAAGCAATACTTGTTTTTAATTAGAATCCATTTAATTTACATATCTCAATGATTTTTATAGAAAAGATGGGTATTTTGGTAGAATGCTATAAATTAAATCCACCCTAATTATTATTTATTAAAAATCAACAAGTTAAATCTCTTTAAAAATTTGAAAAATCTGGTAGAATTTATCGAACGCTATAACTGTAAATAAAACAGATAGCTATATTTAGA # Right flank : ATCTTCTCAGACTTTAGGTAAAGAATTGAAGTGCGTAACTTAGTTTCGATTTACAATTTTTATCGATGCTTGAAAACGTAACCCAAATATGTAGCGCGCTACAGTTAATGATTTATTAGTTTTAAATGATGATTATCAGACAATGAGGCATGTCCTTAGCTTACTCGCTTAATAAAGTATCCCCACCAATTAAGCATGATTCTGCGTTGTTCTCGGTAGGTAGCTCGGTTATAAGTTCTCCTCGCTCTATAGTATCGGCATAGGCAAGCGCTACTTCAATAATATTCGCATCAAATCTTTGCCCATTTAGCAGAGCTAATACCATTTATTAGGTAACATTAAGCAACGTGTTGGTAATTTCGATTCTAGCCATAGCAAGAGCTTGCATGAATTAGGAAAGTTTTTGTTCGTTTATGGTTGTTATTTGCCCTTTTATCGTTTTTTGAAAGCGTTTTTTATTTTGGTTACGAGGTTGGCATCAATCAAGCCTATATTCACCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2908-3605 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000086.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 2908 26 100.0 35 .......................... CCGCGAGCTGAGCGACTAAACCGTATTCAATTAGT 2969 26 100.0 35 .......................... CCGCTGCTAGCAATACAGCGTAGCGGTGAACCTGT 3030 26 100.0 36 .......................... CCGGGTGCTAATTTTGGTTATGTATTTGATGCGCAA 3092 26 100.0 35 .......................... CCGAGGTCACTCACTCATGGTCTGTTTCGGGCGGT 3153 26 100.0 35 .......................... CCGATAAGCACGGCATTTTAATAGACGGCTACATT 3214 26 100.0 35 .......................... CCGTACGCCAAGTTGATTTTCTAAATTCGGAAAAT 3275 26 100.0 35 .......................... CCGGTATGTTAGCGTCATTATCAACTCTAAATAAG 3336 26 100.0 35 .......................... CCGCAAACAAACTTTGCCATTTTACTGGTGGATGA 3397 26 100.0 35 .......................... CCTTCCCTTTGATTCTCAGCAGCAGTCTTATTACT 3458 26 100.0 35 .......................... CCGCACAGCTAAAGACGTGGAAAAAATACCGCATT 3519 26 100.0 35 .......................... CCGTTTGTCTAACTGCGATTTATACAGCTCTGCTG 3580 26 84.6 0 .....................T.TCT | ========== ====== ====== ====== ========================== ==================================== ================== 12 26 98.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCACACCGTGCAAAAATGTTAGACATTGCAAAGAAAGCTTTTGACGGGCTATTTGAAGAATAGAAACAACAAAAAGGCACTTATCGAAGCGAGATTAGATAAATTTGGCATCACCCAGCCTTATCAGCGAGACTTTACTCTGCAAAAAGTGCAACGCATTAAACCGTTATTCTGTATTAAACAATCGATAGTAATTCAGTGGATAATAAACCTTGTATGATAGTGAGCTGGTGTAAAAAATATACCATCAATCAGTAGGGCAAAGCTCACGCTAATACGAGAGTAAAAGATAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTATTTCTTGGTAGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAGA # Right flank : TCAATCCATAAAATTCTTAATACCTATCTATAAAATATCTCATAATGCGGTTATCTACCGTTAACTCAGGGTGAAATGAACAAACCAAGATATTATCTTGTTGTGCCATTACACAATGATCATTAACGAAAGCAAGTTGTTTGACTTGTTTACTTGCTTTTATAATATACGGTGCCCGTATAAAAACAGCAGGAATTTGTTGACCGATTAGTTCAATATTTAAAAGTGTTTCAAAGCTGTTAATTTGTCGCCCAAAGCCATTGCGCTCAACACTAATATCGATTAAGCCAAGCTGTTCTACTTCATTATGTGTTGTGGTTTTACCGCAAAGCACAAGCCCTGCACAAGTACCTAAAACTCCTTTACCTTGTTTAGCTAATTGTTTTATTGGCTCTATTAATCCATTTTGTTTTATTAAGCGACTAATAGTGGTTGACTCTCCGCCGGGAATAATTAAGCCATCTAAATTAGCTAATTGTTCGGGTTTCTGAACGAGTGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 952-497 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHM01000096.1 Gilliamella apicola strain wkB18 Gilliamella_apicola_wkB18_contig83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 951 26 100.0 35 .......................... CCGACGTTTTTTTTGCTGAAATACTGGGGCATGAT 890 26 100.0 35 .......................... CCGAGTCCATTATTGATTTATATTCTTTTTGAGCA 829 26 100.0 35 .......................... CCGCGATACATCTGAAAGAACTATTTATGCCGTCT 768 26 100.0 35 .......................... CCGCATTGTGCAGCCTGCATTTGTACAACCGAGTA 707 26 100.0 36 .......................... CCGCCCACAGGATGCTATTGTTAAGCTAATTCCTGC 645 26 100.0 36 .......................... CCGCTCTTTCTTCATTTTTGAGAATTCCGCATTTTC 583 26 100.0 35 .......................... CCGGAAAAAATGGTTTTACACGTGGTAATCCACAA 522 26 88.5 0 .......................CCC | ========== ====== ====== ====== ========================== ==================================== ================== 8 26 98.6 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAGCTCACGCTAATACGAAAGTAAAAGACAATATTTTTTGTTTAGGTACATTCGAATATTTATATCTTTTTGAATTTAAATTAAAAATTGGTGTTTCTTGGTGGAACGATAGAAATTGGAAAAAGCCTACTTACGACTTATTAAAAATCAATAAGTTAAAAATCTTTAAAAATTTAAAAAATCTGGTAGAATTTGTTGGTCGCTATAACTGTAAATAAAACAGATAGCTACAATTAG # Right flank : CCCCTTTATCTTAATGCTAAAACCCTAATCCCACTTAATTGATAAAATTTTAAGTGGGGCTTAAAAGCAGCAACCTAAAAAAACATGACTCACTAAGCTTATCTTAAATTTCAATAAATTAAGTTTAATTAAATATTGCAAATTATGTAAAAATAGTGTAATTTTCATGCCCAATTTTAATTATCATTATTGATTATTAAAATTACCGATAAAAACAGACAAATATGACAAAACTAAATAAAAATAAGTAGCAAGGTAGTATAGGTAAGGATGTCTCGGTTGTTAGTATATCAAATGCCCACATTATGCAGCATGATATTCATTCATTTGCATTGGTTTATTCACAATAAATTTGATTATTGTCCTTTACTGTTTGGTTTTCTAATAAAAACAAAGCAATCACGCTATCAATGTAACAATCCTCAACGCCAGATTTATGGCTATCTATTCATGCCCCTTAAAACAACTAATCATTAATCCATTTAATGGGGTAAAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //