Array 1 110801-109392 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCX01000058.1 Escherichia coli strain Win2012_WWKa_ALT_54 Cont058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110800 28 100.0 32 ............................ AGTAATTCCCCAATAATTCCCCGCGCAAAAAA 110740 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 110680 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 110620 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 110560 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 110500 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 110440 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 110380 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 110320 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 110260 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 110200 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 110140 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 110080 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 110020 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 109959 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 109899 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 109839 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 109779 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 109719 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 109659 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 109599 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 109539 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 109479 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 109419 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 120612-119862 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCX01000058.1 Escherichia coli strain Win2012_WWKa_ALT_54 Cont058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 120611 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 120551 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 120491 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 120431 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 120371 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 120311 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 120251 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 120191 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 120131 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 120071 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 120011 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 119951 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 119891 28 85.7 0 ....................T...C.CT | C,A [119865,119868] ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14515-15946 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCX01000093.1 Escherichia coli strain Win2012_WWKa_ALT_54 Cont093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14515 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 14576 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 14637 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 14698 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 14759 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 14820 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 14881 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 14942 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 15003 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 15064 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 15125 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 15186 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 15247 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 15308 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 15369 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 15430 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 15491 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 15552 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 15613 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 15674 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 15735 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 15796 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 15857 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 15918 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31446-32270 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCX01000093.1 Escherichia coli strain Win2012_WWKa_ALT_54 Cont093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 31446 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 31507 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 31568 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 31629 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 31690 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 31751 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 31812 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 31874 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 31935 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 31996 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 32059 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 32120 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 32181 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 32242 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //