Array 1 418421-418054 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAHKKA010000002.1 Haemophilus sp. SZY H36 Scaffold2_1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    418420	    32	 100.0	    35	................................	TACAAAACCCTCAATAAATTAGACTGGACGCAATA	
    418353	    32	 100.0	    35	................................	ATGGAAGCTGTAAAAATTGATACATCATAACGTGA	
    418286	    32	  90.6	    35	..........C..C....G.............	AAAATGGGCGGTTACATGACCGAACTATTAAAAAA	
    418219	    32	  90.6	    35	....T.....C..C..................	AACAAAATCTTAAACCCAATGTATTCAGTAATTGC	
    418152	    32	  96.9	    35	........T.......................	AGCGATGAGCCTTATCCCCCGTAGGGCGAATGAAC	
    418085	    32	  90.6	     0	..G...A........T................	|                                  	
==========	======	======	======	================================	===================================	==================
         6	    32	  94.8	    35	GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC	                                   	       

# Left flank :   TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGATGACACAAACGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTCTTTGAATGCGATGTCACGCCTGACCAGTGGGTCATGTTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTTTGCGTTTTTACCATTTGGGTAGTAAGTGGCGTAATAAAGTGGAGCATAATGGGGCAAAACCGGCAGTAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTGTTTTCTTTAACAATTTGGATAAGTTAATCTATTTGTATAACGGCGGTACGGCCGTTATACTGACCAAACTCCTTATCATAAAATCCGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATATAGGGA
# Right flank :  AGCATTAAGTACTGAGCAGTACAACTGTGCGCAAGCTGAAAAGCAAAGGGAAGATGAAATTAAAAAAATCAACTCTAACTTTAAATATGAAATCAAGTAGGTAAATTATGGAAAATTTAATTAGATTATCTTTATTGGCTTTATTCTCTATTACTCTCTTTGCTTGTAATGAAGAAAGTAAGGAAATGACGGTTTATGATTATCTTGTGAATAAACCTTTGCTAGATAGTGATATGCAGAATTGTATTAGTGGAAAAGAAAATAATGTGCATAAGTGCGATATAGTAAAATCTGCTTACAACAGATATAACTTCTTTGAAGAAGGTCTTTATTCAGAAAAAGACTTAAAAGAATTAGGCAAAAAATAACTAATAAAAAGGGGATTGTATGGGTGTTTTTACTTATGTAGATAATGCTGTGTCTACTGTATTAAGCAGCCGCCTTCGGGCGGCTGTGTATTGAAACACTGCAGTGCTTATGTCATTTGTATTGCTACGCCG

# Questionable array : NO	 Score: 5.69
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.20,-6.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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