Array 1 4304358-4302744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015134.1 Klebsiella pneumoniae strain ATCC 35657 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4304357 28 100.0 33 ............................ TTTTTATTCAAGCGGGGCATAGAGGTGTTCAGG 4304296 28 100.0 33 ............................ TGTACAGCAAAAGAGCAAGGACGTGGTCATGGC 4304235 28 100.0 33 ............................ TGGAGATCTGGCAGTAAAGGGAGTTTCTGATGA 4304174 28 100.0 33 ............................ CCGGACGTTTATCGTTCCCCTGAAAGAGCTGTA 4304113 28 100.0 33 ............................ CGCGTGGTGGACTGGAAGGAGTATTACCGGTTT 4304052 28 100.0 33 ............................ TTGCGGCATAAAGCGGTCGCGTTCGGCGTTATA 4303991 28 100.0 33 ............................ CCATGCTGCAGATAAATGACTGGATGGGGGAAG 4303930 28 100.0 33 ............................ CCTGGATCCGAAACCCCTCCCAGGCGCTGCGGA 4303869 28 100.0 33 ............................ AACCTGAAAAGGTCAAATTTATAAAGGATGAGA 4303808 28 100.0 33 ............................ CCCAAAAGCCATAAATTCTCCTATTGTTTCCAG 4303747 28 100.0 33 ............................ CAGCGCTCCGCCGCAAAATCACGCGTTGAGGCG 4303686 28 100.0 33 ............................ CTGGACGAGTCATTGAGCGGGAGATACGGCGGA 4303625 28 100.0 33 ............................ CGGAAAAGGCCATCAAGGTCATGATCCAGGAAA 4303564 28 100.0 33 ............................ TAAACTGCCGCTTATCGCGTTTGCGTGGGCTGA 4303503 28 100.0 33 ............................ TTATCTACCCAGGAACTTCTTGCTTGGCAGTTT 4303442 28 100.0 33 ............................ TAAAGCGTTGTGGTGATAGCCATCAGCTAATTT 4303381 28 100.0 33 ............................ CCAGTATTCGCGGCTGGCTGGTGGCAAATGTTG 4303320 28 100.0 33 ............................ TCGACTGGCGCTCACGGAAAACGGCAAGGTCAA 4303259 28 100.0 33 ............................ TGCCCTCGAGTCGGAAAAAGCTATCGACCGCGC 4303198 28 100.0 33 ............................ TTAGCTCAAGTAACCCTTCTTCAATCATGCTTG 4303137 28 100.0 33 ............................ TCGCGTCATGGTCCATGCTGTGGATTTTTGCCA 4303076 28 100.0 33 ............................ TTAATAATGGATGCTGGCGGCCTGGCGGGCTTC 4303015 28 100.0 33 ............................ TCAGCAGGCAGGACGCGCCCCACACCAGCGGCG 4302954 28 100.0 33 ............................ CTGACGAACCAGCGAGGCGGCGGTGCAGAAATA 4302893 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 4302832 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 4302771 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATATTAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4313688-4313111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015134.1 Klebsiella pneumoniae strain ATCC 35657 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4313687 28 100.0 33 ............................ CCTTCGCGCACACCATCAGATTCACTTCTGAGG 4313626 28 100.0 33 ............................ TAAAGAGCCCTTCATTATCCCACCGCTGGTCGG 4313565 28 100.0 33 ............................ CTGGACGCCGCAGGGCTTATGCTGCACGATGTG 4313504 28 100.0 33 ............................ CTATCACGCCGTCGTAAACTTCTTTGAGGTGTC 4313443 28 100.0 33 ............................ TACTCAGTGAGTGAGAGGGTTTGAGTATCGTCA 4313382 28 100.0 33 ............................ CGAGCTCATTCAGTCGCTGGAGTCGGCGGGCGA 4313321 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 4313260 28 89.3 33 ............C.........G.G... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 4313199 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGACTCTATCCT 4313138 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.9 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTTGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //