Array 1 204-1836 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000012.1 Fischerella thermalis JSC-11 ctg107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 204 37 100.0 33 ..................................... AGCTTTTGGCTAACCTCCAACCTTGGGGATTAG 274 37 100.0 36 ..................................... ATCGTGAGGATCTATCACGCTCGGCGATTCAACCTC 347 37 100.0 35 ..................................... GGGGTGATAGTAGCAGCTTGGATTAAAGGAGAAAG 419 37 100.0 36 ..................................... GTTTAGCTATACAACGCACAGGACTTGACCCATGGT 492 37 100.0 36 ..................................... GCCGGCAAAATACAACTATGTGTTTGCATATGGGCG 565 37 100.0 34 ..................................... GTCGCCTGCGATCGCCAAACGATTAAGCATCGTT 636 37 100.0 34 ..................................... CATAACACTTGCAACATAGCTTGCAAAGTAGAGA 707 37 100.0 35 ..................................... AGTGTCCACCGAGGCTAGCGATTTCGTGGTACCTA 779 37 100.0 37 ..................................... ACGTACAAGGAGTACAACCTTGAGTGGCATTGCGAAA 853 37 100.0 36 ..................................... AATAGTTTCTTTTATGCCATGCCTATAAGTCTTAGA 926 37 100.0 33 ..................................... CTACTCCAATAACCTTATCCGCGCAAGAACTCC 996 37 100.0 36 ..................................... TGGTACTGCCGATTAGTAGTCGCCTTGACACTCCCC 1069 37 100.0 39 ..................................... CGCAATTGAGCGACCTAAGAGACTCCGGAGCTATCGAGC 1145 37 100.0 34 ..................................... GGGGGCGTAGCACTTTCAGGCAGCGATCGCGACA 1216 37 100.0 35 ..................................... CCACCAAATTTAACCTCTTGGGCTTCATTAAATTT 1288 37 100.0 33 ..................................... TTTTTTCATTATGGATCAGTTTTCTTCTTTTGG 1358 37 100.0 36 ..................................... GGAGAGAGAGTAATGACGACCATGCTCCCCTTTCGC 1431 37 100.0 41 ..................................... TGCATCGTTGGCTCCAAAAACAGTGCAGTGGTACGGGGATT 1509 37 100.0 34 ..................................... TATATTAATCAAATATTGGAATATTCCACAAAAA 1580 37 100.0 34 ..................................... ACCGAAGTGACATAATCGATTTGTATGTGCAATA 1651 37 100.0 35 ..................................... CAAACAAAAAAATTTTTTCAATCCCAACCTAACTT 1723 37 100.0 40 ..................................... CGACCGGATCCCAAATGAAATTGCAGATTTGCTTCGAATC 1800 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.9 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCTGCATCACTCAGATCGCTAGCATAGGGTTCCTTTGGGGATTGGCAATCTCAGGTAAACTACTCATCTTTTCTACAACTATTCAACCTGATCTAGATTAAAATCTAGTCCAGCTCACTCAAAAGCTCTTTAGATTTTCTTTACGAATCACCTCTTAGGGATTGAAACTGCATATGGCAAGAACTATGGCAAGAACTACGGACG # Right flank : TCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGACTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 213533-219725 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000011.1 Fischerella thermalis JSC-11 ctg108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 213533 37 100.0 40 ..................................... GCCAGGGAATTGAAGCGCGGACACATCAACGCTTATTTGC 213610 37 100.0 33 ..................................... AAGGCTTTTAAGGGGAGAGCGTCTAAATATCTC 213680 37 100.0 39 ..................................... TGACGAACTGCGATCGCGTTGCTGCATCAATACTCAATA 213756 37 100.0 35 ..................................... CACCCATCGGTACGACAGGCATCAATTGGGGACGG 213828 37 100.0 37 ..................................... AACCGTAAAAGGAGGAGGATCTTGGTTAGGAATATTT 213902 37 100.0 38 ..................................... AAGCAGATATACTACCGATACCGGCATTGGTGCCGGAT 213977 37 100.0 33 ..................................... GTGAAATTAAATCCAGCGGTGTATTTGACGCGA 214047 37 100.0 33 ..................................... CTCAGAATCTTACGCAATATCGGTAAATTCTGA 214117 37 100.0 34 ..................................... TTGCTGAATTTAAGGCATCATCAACCTTATCTGG 214188 37 100.0 35 ..................................... GGATAACGATCCAGATCAGATTATTGCTATACCTG 214260 37 100.0 33 ..................................... TACATCATCACGATTTATAAACCAACGACCTTT 214330 37 100.0 35 ..................................... AACGTCCTGGGAGAGATAGCAGAAAGAACACTGCT 214402 37 100.0 36 ..................................... GTAATCCAATCTAACTACTTCCTCTCCGTACCTACT 214475 37 100.0 36 ..................................... TACTTCCATCCAATCAAAATATTGCACTTTTCTTAT 214548 37 100.0 35 ..................................... TCGACTCTTGAGCATATTGGTGATGCTGGTGAATC 214620 37 100.0 34 ..................................... ATTATTTGGGGATGGATAAATCGGGGATATTTTA 214691 37 100.0 36 ..................................... TTCACGGCTTCGACCACATGACCGGAGGACTGGAAG 214764 37 100.0 34 ..................................... TGTAAGACCAAGCACATAGAATAAGCTGCCCAAG 214835 37 100.0 38 ..................................... GTAGTAGCCCACGCCGTTATTGGCAAATTCATCTGTGT 214910 37 100.0 40 ..................................... TTAAGTGCTAGAGGATGGTTACTCTGGAGCTATGATCCGG 214987 37 100.0 36 ..................................... AAATTGGAAGCGTGGTTGCGGAGCAAAGGAATAATT 215060 37 100.0 35 ..................................... AATGGCTGAACCTGAGGCTGAACCTAAACCAGATT 215132 37 100.0 33 ..................................... TAGCTACTGAGTTCCTAACAGAAGCCCTGGAGA 215202 37 100.0 33 ..................................... CCCACACAGGAAGCAGTAGGCGATGAAGCAAGG 215272 37 100.0 38 ..................................... AAAAGGAGATCCGACGGGATAAATCAAATCAAACGGGA 215347 37 100.0 36 ..................................... TTGGAATTTTTACTCCACTCCCAGACCACAAATCAA 215420 37 100.0 41 ..................................... CCTGGAGCACTGTGTCGGCGGGTATGGGGCGAGGATCAATA 215498 37 100.0 35 ..................................... GCTCTACTTCCGCTTGGGGCGATGCTTACTTTGCG 215570 37 100.0 34 ..................................... ACCTTGGGGGCAGCGATCGCGACAGATGCTAGTC 215641 37 100.0 34 ..................................... TTTCAAGAACAAAAAAGCAAACTCGCCTTGTTGC 215712 37 100.0 34 ..................................... CACTCTGTCGGCGATCGCTGCCAGAGGAACCTGG 215783 37 100.0 36 ..................................... CAAATGGCGCATTCCAGCCATCCTTTGAGATATAGA 215856 37 100.0 35 ..................................... ATTTTTTAGATATGAGGTGAGTAACTTAGCTAACG 215928 37 100.0 43 ..................................... ACATAGTTTTGGTACTTTGGCATTGGTACGCCGAAGCATTTAT 216008 37 100.0 35 ..................................... TTCATCGAGCACCTCAACAAAGTCAATATCCTCCA 216080 37 100.0 34 ..................................... AACAATATCTTCAATAAGTCTTATTTATCCTTAA 216151 37 100.0 34 ..................................... TAATGGACAGCTAAATGACTTCAGACCCGGTAGC 216222 37 100.0 35 ..................................... TCTCCAAAATCTATCCAAGGTCTTTTACCATTTGA 216294 37 100.0 34 ..................................... AATAATGCTCTAGCTAACTCTCCAGCATTGGGGG 216365 37 100.0 34 ..................................... ACAAACCAAATACCCAGCGCCTACATTAATTCTT 216436 37 100.0 34 ..................................... ACGCCGCAGATGGTTAGTTCTATCATGACAACTG 216507 37 100.0 35 ..................................... AGATATGTTTGGGGCTTGCCTTCTGAAAATTCCAC 216579 37 100.0 34 ..................................... CAGACTTTACAACTGGTGGGGACTTTTTCAACTA 216650 37 100.0 35 ..................................... TAGAAGCCCAAGCTTCATCGTCTTCCGATACATTG 216722 37 100.0 40 ..................................... CAATCAATGCATTGAAATCCTTGATCGTTTTTGGCGGCTT 216799 37 100.0 36 ..................................... GGTGTAGGCTTCTGGCACATTTTTAATGTTTCCAGA 216872 37 100.0 34 ..................................... AGAACCACAATCCTTGGATAGTAGTAATACTTCT 216943 37 100.0 34 ..................................... TTGGGAGCTATTATGTTTGATCCTGGCGCGATCG 217014 37 100.0 38 ..................................... TTTCCCATTTGCTTCCACATTCAGCCCAGAGGATGAAG 217089 37 100.0 33 ..................................... AACCTCCAAAGAGCTAGCCTTGGTGCTGTCTTT 217159 37 100.0 38 ..................................... CTACTCCGGGTTACTACCGGAGCTTTTTTTTTCATATT 217234 37 100.0 33 ..................................... CCGGCACAAGCAGCGATCGCTCTTGAGCGAGTC 217304 37 100.0 35 ..................................... CCGTTAAGTTCTCGGATGGGTGCCCTAGCAGATAG 217376 37 100.0 34 ..................................... GGCGACCCAGTTTCTGGCACTGGGATACCAACAG 217447 37 100.0 35 ..................................... CTGGTATCTCGATCTATGATCCTAAGATCGATGCT 217519 37 100.0 35 ..................................... GATGAGAAAGTTACACAATCTGCTACAACCCTAGA 217591 37 100.0 33 ..................................... TTCTATGCCTTTGCTAGCCGCACACAGCGGTTT 217661 37 100.0 33 ..................................... GAAGTCTGGCAGCCTTTCTACATAGGCTGCCGC 217731 37 100.0 35 ..................................... AGGATCTTTAGCTGGTGTGCATCTCTCGTTAAAAA 217803 37 100.0 41 ..................................... TATCCAACTTTTTTATTCTTTTCTTATTAATTTGCTCAGGA 217881 37 100.0 38 ..................................... TTATCACTACCACTAACCAAAATGACCAATTTACCTCT 217956 37 100.0 41 ..................................... GGGGGATGGTGAAGATCTCGAACTCAAGCACAGAAGGGTTG 218034 37 100.0 34 ..................................... ATAAAGGCAATGGCTAATACTACTACTATTTCCT 218105 37 100.0 36 ..................................... CCGGTAAATAAACCGGAACATCCGCCGGCACATCTA 218178 37 100.0 37 ..................................... GTCGAAGGTATGGCGACTTGGAGGCAAATATCTGGTA 218252 37 100.0 36 ..................................... TCATTTCCGGCTATACCCGTACCTGTATCCCCTTTG 218325 37 100.0 38 ..................................... CCTCAGGTATCCTAAATGTAAAAGGAGGTGCTGGCGGT 218400 37 100.0 36 ..................................... GGCCAATTTGTCAGGGAAGCTGTGAGGAAGGCGATC 218473 37 100.0 34 ..................................... AAATGAATGGGAGCGAGGGTATCCGGTATACTGC 218544 37 100.0 32 ..................................... GATATTTTGCTAGATCTCGACCGGTACACCGA 218613 37 100.0 35 ..................................... CAAGCAAAAAAATTTTTTCAATCCCAACATAACTT 218685 37 100.0 34 ..................................... AGCCGAAAATACAATTTGAAGACAATCTCATTAT 218756 37 100.0 34 ..................................... AGACCCAACTGACGATACTGGAGGGGGGTAAAAA 218827 37 100.0 34 ..................................... GAAAAGGGCAGGGTGTTACTTATTAGCTGTGACG 218898 37 100.0 34 ..................................... TTTGGAGCCAACGATGCATACCTTGGGCAATCTG 218969 37 100.0 35 ..................................... CTGAGATGGGCAAGGTGCTCCGGCTCTACCTGTAG 219041 37 100.0 34 ..................................... GTAATTTATAGAAGTATTAGGCAAATCAGTAACA 219112 37 100.0 37 ..................................... CTGGCTTCATTGAATCCTGCTGTAAGAGGGTCAGAGA 219186 37 100.0 34 ..................................... GTAGCAAATGGCATTACATATCTACCAGCAAAAG 219257 37 100.0 35 ..................................... CTTCCTTGCCTTCGCGAATCTTCAGGATTACCTCT 219329 37 100.0 35 ..................................... TTGCGGACCAGTCGTTGATTTTGCGCAGATATGTT 219401 37 100.0 37 ..................................... AGAGGTGGCAGATGAAGCGATCGCGAAACACACCAAT 219475 37 100.0 36 ..................................... AAAATTGCACACCCAGTATAAGATAAGCCCAGTAGT 219548 37 100.0 34 ..................................... TAATTCAAAACAGCTTTGCGACAGCTGTATCCAA 219619 37 100.0 33 ..................................... GCATTTTTTCTTTGCCAGTATCCGACCACTTCT 219689 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 86 37 100.0 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACTAAATGATTAACCCTCCACTCTTGGCGTTCTTGGCTTTTTGGCGGTTTGTTTTTTAATATTCTGTGCATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCCCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGTGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 24270-24524 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000007.1 Fischerella thermalis JSC-11 ctg114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 24270 35 100.0 40 ................................... AATATGTTGTGTCCAGCGGTAGCTCTATATATATATATTC 24345 35 100.0 38 ................................... AAACCATCAACGACGGCAACACACCAAACGAAACCACC 24418 35 100.0 37 ................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGTC 24490 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 100.0 39 TCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : GTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACTA # Right flank : CTGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 352970-354014 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000007.1 Fischerella thermalis JSC-11 ctg114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 352970 37 100.0 35 ..................................... GAGATCCGAAGTATAAAGACCCACCGTGGAATACC 353042 37 100.0 34 ..................................... CCGATTCGTACACAGCACCGTCGATGGTTGCCAG 353113 37 100.0 34 ..................................... TATTCCAAGCTTGCCCTTATATGAGCGATCGCAC 353184 37 100.0 35 ..................................... TCTTGTATCTACAAGATTGGGCTTTGAATTTTTTA 353256 37 100.0 39 ..................................... TGTGGGTGAATGGGAGTGTATATCGGCAGCCCACGTTGG 353332 37 100.0 41 ..................................... GTGAAAATACCAACCTTCCGCTTAAAATGGAACTGAACAGA 353410 37 100.0 32 ..................................... TCTTGCTCAAAGTGGAATTGATGCAAGTGCCG 353479 37 100.0 36 ..................................... ACTTGAGTTGCAACGCAACTTAGATCTGCGCGGACA 353552 37 100.0 36 ..................................... TTTGAGCATTCCGACAGGGACTACGAAGTCCCACCT 353625 37 100.0 33 ..................................... GCATTTGAATGATTCCCGCGATCGCGGCTTTCA 353695 37 100.0 33 ..................................... CGGAATGATGGGAAAAATCCCATGGCGGTGGCA 353765 37 100.0 35 ..................................... CCTGTAACTGTAATGGTGCCTGAGTACCAAATCCC 353837 37 100.0 34 ..................................... TATTTTATCTACTCGAACTAAAAAAAGTGCGATC 353908 37 100.0 33 ..................................... CAATCGCGCAATTTGCGCGATTGCCGAAGTAGA 353978 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : CGGCAATCCTGACTGCTTGTAAGTGGTGTAGGGACGATTGGTTGCAACTTCAATTAATCCCGGCGTTGCATAATAGAGGGATGAATTGAGGTTATCTACTGTGCAATGTCCATACTGCGACTCTACTGAAATTAGAAAAAATGGTAAACGAAGAGGTAAACAAAATCACATTTGTGTCAATTGTGGTCGTCAATTTATCGATGTTTACAGTCCACCAAAGGGGTACTCAGATGAAATCAAGCAAGAATGTTTAAGGTTATACGTCAATGGCATGGGATTTCGCGCCATTGAGCGAGATAAAGGAGTCCATCATACAACCGTAATTTATTGGTTAAAACAAATAGGTTCTCAACTCCCTGATGTACCGCCTAGCAACGACGTACCAGAAGTTGGAGAATTAGATGAACTAGAAACATTCATCGGTTCAAAAAAAACAAAGTCTGGTTGTGGACGGCAGTAAATCACTTTCAAGAGGGTATCTTAGCTTGGGTAATTGGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 3 354819-356527 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000007.1 Fischerella thermalis JSC-11 ctg114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 354819 35 83.8 34 TA......AC.--........................ CTTCCTTGCCTTCGCGAATCTTCAGGATTACCTC 354888 37 100.0 39 ..................................... TTAATCTCGACTTCTGGATTACTCCCGTTGTCAACTACC 354964 37 100.0 36 ..................................... TCATCACACCACCTTATGAGCGAAGTGATTTACTAA 355037 37 100.0 34 ..................................... TCTTTGTGTATGAGTGCGTACCCAAAAAAGATGG 355108 37 100.0 40 ..................................... CCTGTCTCTCCATCTCTTTGTTTGGCGACAATCAGCTCAG 355185 37 100.0 33 ..................................... CCCCTCCGAAGACGAGTTCCGCGAGACCCACTT 355255 37 100.0 36 ..................................... TATTTCTAGTTTGTCAGCACGCGTTGACTCGTAAAG 355328 37 100.0 35 ..................................... TTTGCGAGGCGAATGACTTACTTCGTATGAGTGCG 355400 37 100.0 34 ..................................... AATTGACTCTAGCCAGTTGTTGAATTGTTCGCGC 355471 37 100.0 33 ..................................... GTTGCTTTTGATGATCTCTTTACCTTTCTTTAA 355541 37 100.0 42 ..................................... TGTGACTCTGCATCCACAGAAAGCAAGGAGTCAGTGGCTGAA 355620 37 100.0 34 ..................................... CTTTTGCTATCACTGTCCGATGCCACAATTCGTG 355691 37 100.0 37 ..................................... TCTTCTAGTGACCAGAAACACGTAACCGGGATCTCGT 355765 37 100.0 35 ..................................... GAAACCCTTGATAAACACTGAGGTTACAGGTTGCC 355837 37 100.0 35 ..................................... TAGATCCACCTATAGTGCACTGTTCACCGTCCTAG 355909 37 100.0 33 ..................................... TCCCTGCGGAGATTAAGATCTTCTGCCTAGTCT 355979 37 100.0 33 ..................................... GTCGGTGTTTGACTTGCCGCTCCTATAGTTGCT 356049 37 100.0 34 ..................................... ATCCTCTGCGATCGAGATTTTAGCGTTGGCTTCG 356120 37 100.0 36 ..................................... GAGGATCAATAGAGCAGGAAGGAGAAATCCAATGCC 356193 37 100.0 35 ..................................... TATTTCTTCTCCCTGGAGATGAGCAAGAAACAAAT 356265 37 100.0 37 ..................................... GCTGAATGCCAAGCCACCCCAGCGGGAATACAATCCA 356339 37 100.0 35 ..................................... CAGACTATCTTGGTATATTGTTTCAAAATTGTTGT 356411 37 100.0 38 ..................................... GCCATATTTTCTACCATCGATGATCTAACTAGACAGTT 356486 37 97.3 0 ....................................G | A,CT,C,T [356513,356515,356521,356523] ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 99.2 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TCCATCATACAACCGTAATTTATTGGTTAAAACAAATAGGTTCTCAACTCCCTGATGTACCGCCTAGCAACGACGTACCAGAAGTTGGAGAATTAGATGAACTAGAAACATTCATCGGTTCAAAAAAAACAAAGTCTGGTTGTGGACGGCAGTAAATCACTTTCAAGAGGGTATCTTAGCTTGGGTAATTGGCGATCGCAGTTCAGAAACATTTAAATTCTTGTGGGACATTGTTTCCTGTTGGCAATGTTACTTCTACGTCACAGACGGTTGGAAGGTTTATCCTTGCTTTATTGACCCAGGAGACCATATCGTCAGCAAAACATATATGACTAGGGTTGAGGGCGAAAATACCCGATTGCGCCATTACCTAGCAAGACTACACCGAAAAACACTCTGCTATTCTAAATCCGTAGATATGCTTAAACATTCAATTCGATTGTTACTTCATTATTTAAAGTATAGAGAAATACCAGTATTTGCATAATTCATCCCGCATT # Right flank : TAAATATTAAATAGCCAATCGCCTAACCATGAGACGAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 180673-183843 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000004.1 Fischerella thermalis JSC-11 ctg115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 180673 37 100.0 37 ..................................... TGCTGCTAGTTTATTTTTCTGTAGTTCTAACTCTAAT 180747 37 100.0 38 ..................................... AAGTTCCAGAGGACTCATCGCTATCTGAGTCCCCTTTG 180822 37 100.0 34 ..................................... GGTTTCTGATGCAATCCGCCAAGGACGATCAATT 180893 37 100.0 35 ..................................... CTGGGATCACGGTCCTCGTCTTAGCAGTTATATTG 180965 37 100.0 36 ..................................... CGCAATTGAGCGACCTAAGAGACTCCGGAGCTATCG 181038 37 100.0 35 ..................................... TGGAGCCTCTTTTCTTACTCTTGTATTATAGCATG 181110 37 100.0 34 ..................................... TGCCGCTAAATCAAGATCGAATTCAGTCATATTA 181181 37 100.0 36 ..................................... GCCAGTAGACAAGTCCCCAGGGACGCTTGTGATCAT 181254 37 100.0 42 ..................................... ATTCTATAGCTTCACCATTAGGTGTGTATACAAATCCTCCGG 181333 37 100.0 35 ..................................... AATGCTGCCGGGCAAGCCATTGCAAAATTAAAAGT 181405 37 100.0 31 ..................................... AAAGACTGTGGATATCTTTGGCAGCGCTTGC 181473 37 100.0 37 ..................................... TCAACGTCCGAGAGGACAACCGTTTGGTCGTCTTTCC 181547 37 100.0 35 ..................................... TTTGGCAATATGTTGGGGACGAGGATTTCTTCTTG 181619 37 100.0 38 ..................................... TAAACTGACGCAGCTTAATAATTCCAGGCAGGATTTAG 181694 37 100.0 35 ..................................... AAACAAAAGCACAGCAGATCCAAAGGCAGTCGGAA 181766 37 100.0 34 ..................................... ATCCAGCAATTGAATGTAGTTTGCTTTTGTTTTT 181837 37 100.0 40 ..................................... TTACAGCTCTGCCGTATCGCACATAATCGGCGCTATCCCA 181914 37 100.0 35 ..................................... AATGATTGAATCGATAAACTGGCTGACAATGTCGT 181986 37 100.0 33 ..................................... ATTTTTGTGGCGCGATCGCCACACATATTTGAT 182056 37 100.0 44 ..................................... AGTACAAATTACGCGCCAGCCTTCAGACCAGTAATTAGGGACTT 182137 37 100.0 34 ..................................... TATTACAGTAATAGGAATACCAGTTGCCCTAATG 182208 37 100.0 36 ..................................... GGATTTTGGGAATCTCTTCAGGCTGGGGTATTGGAG 182281 37 100.0 40 ..................................... GCTTATGATACGGAACAAGAAAGGATTCGACGCAAATTAA 182358 37 100.0 35 ..................................... CCGTGGAAGCCAGTGTGCATACAGCCTTAGAGCCT 182430 37 100.0 34 ..................................... AAAATCAGGCAACTTCTCCACATAAGCAGCGGAG 182501 37 100.0 39 ..................................... TGTTGATAATGCCGAAGAGCTTTACTCTAGCAGTGTCCC 182577 37 100.0 36 ..................................... ATTAAATAGGAATTCAAATACCTTTTTGTTGATATC 182650 37 100.0 38 ..................................... ATCGAGAACCCAGAGGGTTTGCGACATCGAGGACTTGG 182725 37 100.0 38 ..................................... GATTGGCTAAATATCTGACGATTCATCGGCACTTCCAC 182800 37 100.0 36 ..................................... GTGCTTACTAGCCTGAACGCAGTGGCTAAGGGCAGA 182873 37 100.0 35 ..................................... CATTAAGCGATCGCACGAAGCAGCATAACTGAAAA 182945 37 100.0 33 ..................................... AATATTGACTCCTACTGTGACTGATATAAATAA 183015 37 100.0 34 ..................................... AGGGTAAATATCAAGACCAAAAGGAAAGAGTTAC 183086 37 100.0 34 ..................................... ATGTCGACAATCTTGGTAACAAAATCCCCTATTT 183157 37 100.0 34 ..................................... AGTATTCAGCTTTTTTATTCATTTCTCATTCATC 183228 37 100.0 34 ..................................... ACCTTTTAATTTATCTACATTACCAGACATTTTT 183299 37 100.0 35 ..................................... GATTACTTGAAATCCCCCAAGGATCAAAACCAGAC 183371 37 100.0 34 ..................................... GAATATGCCACCCCAGTTTCTCATCGTAATGAAG 183442 37 100.0 36 ..................................... ATTCTCGATTTCGAGAGAGAAATCGAAGAAAGAGAT 183515 37 100.0 34 ..................................... GGAATGAGTATAAAAAATCATTAAAGTCTTTAAA 183586 37 100.0 36 ..................................... AGCGCTGTAGGAGTTGATGCCAACAAATCTCTCAGG 183659 37 100.0 35 ..................................... ATGATTTCAGGACAATCGCGGGATAACTCTCTGGA 183731 37 100.0 34 ..................................... AGAATGCGAGAGAAGGAGGAATAAAGAAGAAATA 183802 37 97.3 0 ....................................G | AG,T,C,T [183827,183832,183837,183839] ========== ====== ====== ====== ===================================== ============================================ ================== 44 37 99.9 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : GAAAATCTAAAGAGCTTTTGAGTGAGCTGGACTAGATTTTAATCTAGATCAGGTTGAATAGTTGTAGAAAAGATGAGTAGTTTACCTGAGATTGCCAATCCCCAAAGGAAACCCTATGCTAGCGATCTGAGTGATGCAGAGTGGGAAGTATTGAAACCACTTCTACCCGCACCTAAAGGGTTTGGTCATCCTGTAGAAGTGGATTTTCGTGAGATTCTCAATGCCATCTTTTACGTACAACGTACAGGATGCCAATGGGAAATGTTACCTCATGACCTCCCACCCTACACCACTGTGTATGGCTACTTTCAGAAATGGCAACGTAAAGGCATCTGGCAACAGATACACGATCAAGTGCGCCAAAAACTACGAAGGGAATTAGGTAGAGATGAGCATTCCACCGTTGCCATCGCTGACTCTCAGTCGGTGAAGACAACGGAAAAAAAGGGGAGGTCTACGGTTTCGATGGTGGCAAAAAGGTTAAAGGGCGTAAGCGCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 184800-185932 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000004.1 Fischerella thermalis JSC-11 ctg115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 184800 37 100.0 35 ..................................... CTTGCGCGATCGCCCAATCTGAGCGATCGCCAGCG 184872 37 100.0 33 ..................................... AAGCGGCACTGGAAAGTGCGGTTGCAGACTGGG 184942 37 100.0 34 ..................................... TCCTCGGCGAATGTCGATGCTTTGGCGGAGCTGG 185013 37 100.0 37 ..................................... TTGGCTGCGTTACCCCTCTTGCTTGCAGCCACTCAGA 185087 37 100.0 34 ..................................... GCGCGAGCAACTTCGCAAAAACCCAGAAATCGCT 185158 37 100.0 35 ..................................... GCGAATTTTTCAAGCAGTAGTGCAATCACACTACT 185230 37 100.0 34 ..................................... GTAATGAAATTTTGGAAGGCGAAAGATACGCCTT 185301 37 100.0 35 ..................................... GGCGTCACCGGCAAGCAACCAGACATCGTGCCCAG 185373 37 100.0 34 ..................................... TTTTGTGAACAATCGGCATGGTAGGACGAGAAGG 185444 37 100.0 37 ..................................... CAGTTCAAATAGCCGCTCCCATGGGCACCCTTCTTCA 185518 37 100.0 37 ..................................... AGATCTAACGCCATCGGAAATGACGACCGATGCTGTG 185592 37 97.3 36 ....................................C TGTAGCGATCGCGGCGAGCGCGACAGCCGACCCCAA 185665 37 97.3 35 ....................................C TTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTT 185737 37 89.2 119 .........................G.C.T.....T. TGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGAT GC [185768] 185895 37 78.4 0 TCA.....CC....A.....T...............C | G [185900] ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 15 37 97.5 41 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAT # Left flank : CGGTTTCGATGGTGGCAAAAAGGTTAAAGGGCGTAAGCGCCATATAGTTGTAGACTCGCAAGGATTATTGATTGGTGTTGTTGTGACTGAAGCAAATGCCCCAGAACGATTGGGAGCGATAATTGTATTGGATGAAGCAAAGGAAAAGTTGTCCCGATTAGAAGTTATTTGGGTAGACCAGGGTTACTCTGGTAAAAACTTTGCCAATGCAGTTCAGCAAGTCTGTGGTGAACAGGTGAGAGTGGAAGTAATTGAACGAACCTCACAGACCTTTGAGCATTTGCCAAAACGCTGGATTGTTGAGCGAACATTTGGATGGCTGAATCGATTTCGACGCTTGAGTAAAGATTATGAAGTGTATTCAGAGGTAAGTGAAGCTATGATTTATGGCTCCTTGCTTCGTCTCATGGTTAGGCGATTGGCTATTTAATATTTACTTTACGAATCAGCTCTTAGGGATTGAAATTAGATGTGATCCACTGGACAAAGCATCGTGGGTG # Right flank : CTTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGATTTTGCCTCTAATCAATTCAATGACTTAGGAATGTGATATTGAAAATTTCTAACTCAATTGTGCTACAAGTTGATTTTCCAATAGAGTTTCATTTGTGAGTAAATCCTCAACGGTGATTCGCAAAAAACGCTGTTCATCAACTAAAAACAGGATTTTAATTCGATCGCTTCCGGGAAAACCTGGTGGTGTAAGTTTAGCAATTGTCCTCGCCCCATCTCTATCATTAAGGGGTTTGACAGTGGTGACATCGTTATCAAGACGACGGGTAATCATGCGATCGCCATCAAAATAAACTTCTGTACCACCTGTGTCTGACCCCAATTCACCCATAATTAACTCAATACTGGGCTGATTCTCTACAGAAGCACCCAAAACTAACTGTACAGGCTGAGTCATGGGATAAGGTTGCCCCTCT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 249682-254053 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGIZ01000001.1 Fischerella thermalis JSC-11 ctg118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 249682 37 100.0 34 ..................................... AAGCGTAGTTGGCACTGAGAATAAAATTGCTCTT 249753 37 100.0 34 ..................................... CAATCGCGCAAATTGCGCGATTGCCAAGGCTGAG 249824 37 100.0 34 ..................................... ACTTTTCCGCCTCGCTCTAAAGAGACGAGGCTAC 249895 37 100.0 32 ..................................... CAGTACTATTTGCAGATATGCGAAAGTGTAGG 249964 37 100.0 34 ..................................... TTTCGCTTTGGGCAATCCTCCGCCAAGAAAAATG 250035 37 100.0 33 ..................................... TTCCAAATTTATCCCGTGAATTTTTTCTAGGGA 250105 37 100.0 34 ..................................... TTTTATCTCACGTCTGCCTTGGCGTCTTCGATCT 250176 37 100.0 38 ..................................... GCAACGACATTAGAAGACTCTGTCTGCCCGATAGAAAG 250251 37 100.0 35 ..................................... GTCAAAGCAAAAGTATGCCAGAGACATACTCCGGG 250323 37 100.0 33 ..................................... CGAGACAGCTTCAGTGATTCCCTTCTCAGTCGA 250393 37 100.0 34 ..................................... GTGGCATCGCACTGCCCATGGAAATTCGCAGCCT 250464 37 100.0 35 ..................................... TAAAGCAGTCGCAATTTTTTCTCTTTTGAAAAAAT 250536 37 100.0 36 ..................................... CTTCTTGTGCTGATTCAGCATTGGGGGATTTTAGTA 250609 37 100.0 33 ..................................... AGCTATTAGAAGCAGCAACCTTAGTGCAAAATG 250679 37 100.0 34 ..................................... GCCAGTACCATGAGCGAAATGGGCAAACTATCTC 250750 37 100.0 35 ..................................... AGGGACTTGGATTCGGATGACGAAAAGCCTTTTAG 250822 37 100.0 37 ..................................... TAATTGGCTGCAAATTCAAGGATTGAATGACTACTTG 250896 37 100.0 36 ..................................... AGTGATTATAAGGGATATGCATCTGCGGGGACTAAA 250969 37 100.0 36 ..................................... TATGGGGGCGCATACACGCTTTAAAAATATCCATAG 251042 37 100.0 35 ..................................... ATGATAATCAATTTGATTTTATCAAAAAAAAAGAG 251114 37 100.0 33 ..................................... ATATTGCCACTCCTGTAAGCCCACAGAACATCA 251184 37 100.0 35 ..................................... TTCTTCAATCCAAAATCCAATCTCTCGCTGTCTGA 251256 37 100.0 35 ..................................... CAGCCTCTTCCTCATCTGCCGCTGCCGACTTGAGT 251328 37 100.0 35 ..................................... TCGACGGTTTCGCGTAGCTGCGCTCAATCGTGCCT 251400 37 100.0 35 ..................................... GCGAGTAATTACTGGCAGCCTCTTGTGCGGGAACT 251472 37 100.0 38 ..................................... AGGGATTGGTATCTGCCAAGATTCGCATCCCGCAATGG 251547 37 100.0 35 ..................................... TTTGTTGTGCTAACCATTCTAGTTCTGATTCAGAG 251619 37 100.0 34 ..................................... CGTGGCACCGCTACGGGCACAGGAACTCCGAAAA 251690 37 100.0 37 ..................................... GGCAGGTATTTTTTTATTAAAAAGCAATTTATATAAG 251764 37 100.0 34 ..................................... TCTGCGATCGCTTGACAATCCACTTGATTTCATT 251835 37 100.0 35 ..................................... AGGAGGAAACTTTATGGCTATTAGTAGACCAAAAC 251907 37 100.0 40 ..................................... ATGTAAATGCGATCGCGAGCAAAAGGGGTGATCGCGCATG 251984 37 100.0 36 ..................................... ACACAAAAGATGATCGAAGCCGAGCACCAGTACAAT 252057 37 100.0 37 ..................................... TCATCTTGGCTCTATTTTCCGCCATAATCGCATCTTG 252131 37 100.0 35 ..................................... TATGTGTTCATAGGTTGGGTCATATGTGGCTTGCC 252203 37 100.0 35 ..................................... TGCCGCTAAAGTATCAGTCATATCTACTCCTTTTT 252275 37 100.0 35 ..................................... AATGGCAGCACATCCTCCATAGCGGGAATGTAGGC 252347 37 100.0 34 ..................................... AAGTACGTATCTCTGGTATATGGCGAGTACGAGT 252418 37 100.0 34 ..................................... GGCTAGCACGTCGTAGATGGGACCCCAGACACCA 252489 37 100.0 34 ..................................... CAAATAGATTTTAGTGACTCTGCCTTTTCTTCTT 252560 37 100.0 38 ..................................... GGCACATCATCCTAGTGAATCCTGAAACCAATCCGTTG 252635 37 100.0 33 ..................................... ACACTATCTACGCTGACAAAAGCATAATGAAGC 252705 37 100.0 35 ..................................... CTTTCGATTCCACGAACTTAATAATACTATGGATC 252777 37 100.0 35 ..................................... TTAAGATTAAATTTGCGTATACATCACGCAAATCT 252849 37 100.0 35 ..................................... GGCAACTGAATATAAACGAAGAGGACTATTTAAGC 252921 37 100.0 34 ..................................... TTAAGATTAAATTTGCGTATACATCACGCAAATC 252992 37 100.0 34 ..................................... TATTTTGCTCTCTATTGCATTTACATCAATATTG 253063 37 100.0 36 ..................................... CGACAACCTGCTGACGCGGGAGGAGACGAGCCAACT 253136 37 100.0 37 ..................................... GTACTGAGCCATGTCGTACTGTGCCGCCAGCATTCGG 253210 37 100.0 35 ..................................... GATTCTTGATGTGGGAATGGGGATGATTCGCAGTT 253282 37 100.0 36 ..................................... TCCATCAAGTCCAGCGCGATCGCCAGCTGACGATGT 253355 37 100.0 34 ..................................... CCCAGGCGATCGCCTCCAGCTGAAAGTTCCGGAA 253426 37 100.0 41 ..................................... CAGTGGCATAGTCATTACAGAATTGATTCTCCCGAGATAGC 253504 37 100.0 34 ..................................... TCTGTCCTGACTCGGCAATCACAATCGTAAATGG 253575 37 100.0 36 ..................................... GGTGCATGGGAAAGAGCACAAGATGACATCGTATTT 253648 37 100.0 38 ..................................... TGGTGACATCCCATTTAATCCGCCAAGTTTATCCTGAG 253723 37 100.0 33 ..................................... ATGGGGGCGATCGCATGGCTTTTATCAGTCGCC 253793 37 100.0 33 ..................................... CTAGAAATTCAGCAGCATGTTGAGGTCGCCAAA 253863 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 253940 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 254017 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================= ================== 61 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //