Array 1 15561-15259 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZI01000146.1 Helicobacter cinaedi strain P17D1144 entry146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 15560 37 100.0 29 ..................................... GGAAAGATTTACCTCTATGGAAAATCGTA 15494 37 100.0 30 ..................................... TATCACACAAGAGGAAGCATTACAAGAACT 15427 37 100.0 29 ..................................... AAAAATCCTCCTATTATTCCTAAAGTTAG 15361 37 100.0 29 ..................................... TTTATGATTTTGTATTCCACATAGCAGCA 15295 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================== ================== 5 37 99.5 30 GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Left flank : AAACTTCTATATGCTAGAATTTAAATCCCATTGCTCTGGGTAATGCTTG # Right flank : GGCTCTCTGTTGGTGCCTATAGATAGGGATTTCAAAGGATTTTAAGCTGGAAATTACCTGAAATCCTTTATAATTCGCGACATAGAAGTTTAAGAAGGGACTAAAATAAGGGAGTAAGGGGTCTTCCGCAGGGTAAATCATATCCCTATCAAAACCCTAGAATTCAAATAGGCTTGGTTGCCTATTTTTGATTTTTTGTTTTGGTTGTGTAGTAGTTGTATTCAATTCTTCTTGTTTTTGATACTCCATACCATAGCGGTAATCACCCGCATTTTCGTCAAAGTCAAATAGCACAAGATTTTTATCTTCATTAACATTCTCATTAAATGATGGGTTTCCTAATAATATTTCTATATTGTCGAATTGTCTTTCTGTGATGATAAGTGCGCGGACATTACCATAAGGTGGAAGCACCTTTTTTACAACATTTAGAGAGCTTTTTGCCGAGCTTAACCCTTTGCATATTTTCATATACACGCTAAATTGCATCATAAAAAAGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 15147-14848 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZI01000234.1 Helicobacter cinaedi strain P17D1144 entry234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15146 36 100.0 30 .................................... CATCTTTTGTGGCTGCCTTTGAGCTGACAA 15080 36 100.0 30 .................................... CAGCATTCACACCGCCCACGAACACATCTT 15014 36 100.0 30 .................................... TCAATCGTTTGCGTCCTAAGTTTGAAAGCA 14948 36 100.0 30 .................................... TACACGCTCACAGCCCATAAGCTAGATTCA 14882 34 86.1 0 ....................A--.........T.T. | T [14853] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : AACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTC # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAATACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 52-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZI01000073.1 Helicobacter cinaedi strain P17D1144 entry073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 52 36 100.0 30 .................................... TATAATTTTCTACTAGCAAACTACAATTAT 118 36 100.0 30 .................................... CGAGTATAAAAACGGGTATAGACTTGTCAT 184 36 100.0 31 .................................... AGTATTTCGCTACACCCTTTATATTATACCA 251 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 99.3 31 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : AGTTTAAGAAGGGACTAAAACACAAGCATTACCCAGAGCAATGGGATTTAAA # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //