Array 1 44675-42138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRPD02000003.1 Helicobacter muridarum strain ST1 NODE_3_length_186107_cov_56.0145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44674 36 100.0 30 .................................... TCTCCTCCCTCTACTACAATGCCCAATGAG 44608 36 100.0 30 .................................... AAAACCAAATAATGTTACAAATCCCTACGA 44542 36 100.0 30 .................................... TTAATCCTGCGATAGAGTTCAAAAAAGGGG 44476 36 100.0 31 .................................... TAACAATTTGATTTTATCAGCTAATAAAGAT 44409 36 100.0 30 .................................... GATTGAACGCTATAGTTATCACTAAACCAA 44343 36 100.0 30 .................................... TTTCCATCTAATTTTAATGCTGCGCTTAGT 44277 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 44211 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 44145 36 100.0 30 .................................... AGACTAGAAACCTTAGGAGCTGTAGAGATA 44079 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 44013 36 100.0 30 .................................... TGATGAATTCGACAAACTATCGGATGCATT 43947 36 100.0 30 .................................... CATCAAATAGTGCTGCTAAAGATGAATATG 43881 36 100.0 30 .................................... TCTACAGCATCGCCTACTAAATGACGAGAT 43815 36 100.0 30 .................................... TCTTGATTGACGCGTAGCATTTGTTTTAAT 43749 36 100.0 30 .................................... ATCTAGTTTTCTTTTTTACGCAGAATGCAG 43683 36 100.0 29 .................................... TTTACCTGCCATAAGATTTATGGATTCTG 43618 36 100.0 30 .................................... TTAGGGATTAATGAAGCCGAAAAGGCACTA 43552 36 100.0 29 .................................... TATACTCACCGACAGTATAAGAAAGAGTC 43487 36 100.0 31 .................................... TATTATTTCGATGACTTCATTGACTACGAGT 43420 36 100.0 30 .................................... AAATTTAAACGCAGATTTTGTTTTGAATTT 43354 36 100.0 29 .................................... ACCAACAGGAAGTAATAAGTTCCCTATGC 43289 36 100.0 30 .................................... AATTCCGCGCTTTTTAGCTTCTGCTTCCAA 43223 36 100.0 30 .................................... TGCGAATTAATGAAGTCTTACAAACTGCTG 43157 36 100.0 30 .................................... AATTCCGCGCTTTTTAGCTTCTGCTTCCAA 43091 36 100.0 30 .................................... TGCGAATTAATGAAGTCTTACAAACTGCTG 43025 36 100.0 29 .................................... GATCCGAAATAACTAAACCCGTGACTCCA 42960 36 100.0 30 .................................... TATGAAAGAATATAGTAATGTTGGTATGCA 42894 36 100.0 30 .................................... TGTTCAAAGGTTTCAGGTATGTGGGAGTCT 42828 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 42763 36 100.0 30 .................................... TATCGTTTGCAGCTCCCCGAATATCTCGGT 42697 36 100.0 30 .................................... AAATTATTCCATATCATGTTGTAAGCACGG 42631 36 100.0 30 .................................... AATCCAATCGCAAACCAAGGAATATGAAGT 42565 36 100.0 29 .................................... TACGCAAAGAACAGTATTATTATGTGGAG 42500 36 100.0 30 .................................... TAAGAAGCGTAAGATGGAGACGAGACGCGA 42434 36 100.0 30 .................................... TGGCTCTTTACGGGGGAGACCACATTATCA 42368 36 100.0 29 .................................... CACCGCCGCCGATAAGTGCGCTTGTGATG 42303 36 100.0 29 .................................... TTCTCTTTATACCCTGCGTATACATAGTT 42238 36 100.0 29 .................................... TACTATATCTGCGGCGAATATGGTTCACT 42173 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 39 36 100.0 30 GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Left flank : ATAGTCAAAACCCCAATGATGTTTAAAATTGCTCAAGATGTAGCAAACGCGGCAGGAAAACCTTTTGAGTGGGGAATGGAGCAATATGCAAAACATATTACATTAAAGCGACTAAGTGAACCTGAAGATGTAGCAAACGTAGTAGCATTTCTAGCTAGTCCAGATTCAGATTATATTACAGGTCAAGCGATAGTAGTTGATGGAGGTATGTATTTCAATTAAGAAATTGATAAATTTATACTCTTAGTAGTAGATGATTAGGATAACGGATTTTTCTTTAAAATCTTGATATAGAAATTACATAAAACTGTTATAAGGTTGTTGCTAGCTTTTTACTAGCAATGGATTTATTAAGCTTCAAATAAAAACTCTTAATTTATTAAGAAATAAACTTAGCATCTTAGTTATGAAGAAGCTAAAAATGAATTAGTTACATTAACCTGATGATTATAATAAAGTTTTAAGATAATTAATTTAGATTAAATATATTAAAGTTAGCT # Right flank : ACACTACCTTGAAACTGCGTATTTTAGGATATTTGATAAGTTTTAATAACACTAAATACTATAAAATATTTAGTGTTATTGATAAAATTTGGGATATAATTCAAAAATGGTTTAATAAGTGGCTAAAATAAGGGAGTTCAGGATCTCCCGCAGGGTTACAATCCCTAACAAAATCCTATTTTTACTTTAAGCTTAAATATTGGTTTATATCATGCTAAGAGTAAATTCTACATAAAAATCATAATATCAATATTTTTTACTTTATTTAAGTCACGTTGATATATCTGCCTTTAATATATTTCTTAATCTATACAAAGATTCAAAAATATACGTAATTAATCACAAGTCATATTAAAAAAGCGTAAGCTCCTTTGGCTTATTTGCCTGTTCATTATTGCTTATCTTACCAAGCAAAAGTCTCATGTTATCAAATTGCTTCTCTGTGAGTATTAATGCCCTTACATGCCCTCTTGGCGGCAAGAATAAACTAACTCTATCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCACTTATTAAATCATTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //