Array 1 249195-253183 **** Predicted by CRISPRDetect 2.4 *** >NZ_UITG01000004.1 Klebsiella pneumoniae strain EuSCAPE_ES146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249195 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249254 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249315 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249376 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249437 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249498 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249559 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249620 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249681 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249742 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249803 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249864 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249925 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249986 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250047 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250108 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250169 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250230 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250291 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250352 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250413 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250474 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250535 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250596 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250657 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250718 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250779 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250840 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250901 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250962 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 251023 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251084 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251145 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251206 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251267 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251328 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251389 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251450 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251511 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251572 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251633 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251694 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251755 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251816 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251877 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251938 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251999 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252060 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252121 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252182 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252243 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252304 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252365 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252426 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252487 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252548 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252609 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252670 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252731 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252792 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252853 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252914 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252975 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 253036 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 253097 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253155 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 66 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134683-133317 **** Predicted by CRISPRDetect 2.4 *** >NZ_UITG01000010.1 Klebsiella pneumoniae strain EuSCAPE_ES146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134682 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 134621 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 134560 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 134499 28 89.7 32 .....-......TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 134439 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 134378 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 134317 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 134256 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 134195 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 134134 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 134073 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 134012 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 133951 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 133891 28 93.1 32 .....-......T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 133831 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 133770 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG C [133765] 133708 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 133647 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 133586 29 96.6 32 .........................A... CATTACCAGATCCGAATGGACACCCGTAATGA 133525 29 96.6 32 .............C............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 133464 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 133404 28 96.6 32 ..........-.................. CACTACCAGATCCGAATGGACACCCGTAATGA 133344 28 89.7 0 ..............C........-....A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 94.9 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAACCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCAAGCCCTGCCCAGGATTATACTTCCGGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //