Array 1 3742-4173 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCE01000002.1 Syntrophomonas palmitatica JCM 14374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 3742 29 96.6 36 .......G..................... GACGCGATTCGGACGTCGGCCCGCGGGCGACAACCA 3807 29 100.0 39 ............................. GCAATATATATCCCTATATTTTATTTTATGGGTAGTTTT 3875 29 93.1 26 .......G..............A...... CCTACCACCTGCGTCCGGGTGATAAA Deletion [3930] 3930 29 100.0 40 ............................. GCGTGCATGAATCCGATGTTTGTTGCCCGCGGGCGAAAGA 3999 29 100.0 32 ............................. GATTGGAACATGATAGAGAAAGAAAACATTAC 4060 29 86.2 56 .....CA.T.........A.......... ATAAGGGGTTAAAAAACGGGCCGCATATGCAAAATGGCCGGTAAATAGCCAGAACA 4145 28 72.4 0 A...-.AAT..G......A...A...... | T [4170] ========== ====== ====== ====== ============================= ======================================================== ================== 7 29 92.6 38 GTTTGTGTACTACCTATACGGGGTTAAAA # Left flank : CCACCGAGCCTGGGCAGAAACCGTTCCCACAGTACACCCTACACAGATATGGTTTGAATGTCAGGGCATCAAAGAAGAATTATGGAAAATCCTCACCAAAGTAAGAAGGATTGGTGTTTTTCGCAGGGTAGGATTAGGTGAAGTGGCCAATATACACATTGAACCCTGTGAAAATACTATGGCAGGATTGATATATAACGATCAGCCAGCCAGGATGTTGCCAGTAGCAGATTGGCCGCAAGGCGAGCAAAAAAAATGGAACAAAGTTGTAGCAGCAACCAAAGCGCCTTATTGGTTTCCTGGCAACAAAGAATTATGCTGGGCACCACCAACAGAAACCACGATTCCTAACATATCTGTCGTCGATTATTAGTAGCGTAAAAAACCCAGGGGGCAGACGACAGCAAGAATACCTAAATAACCTAACATTATAAGAGCGGTATAGTTATAAAACAAAATCTATACAAATCATAAACCTGGTAATATAGGCTTTAAAATGG # Right flank : AGCCTAATTGAACAGCATAAATCATAAATTCCGCTGTAATCAGGAAAGGGAGTGATCACCATAGACACATTATACGGACAAATTATAGGACAAGAAGTTAAAAATCAAAAAACATTTTTTAAATTTAAAATTAACAAAGATAACGTAATCCTGCTTGAAGGGCTTGAACAGTGCAATATCGGGGACATAATAACCGTCACAGGCAAATATAACAAGGCAAAAACCAGATTTAAAGTACAAAACACCCCCAAAAACCTGGAAATAATTGATGATCTTGAAGCTATTGCCAAATTCACCGGAATAACTTTGACCAATGACGAATACCGGGCCTGTTTAAATGATTTGCATGCTGATTGTTTTTACACGGCTTCAGGGTCATTGGGGAATACGGAAACCAGAATAAAATTTTTAACTGAACATACTGGTGAAACGGGAGAAAAATTTGTCGCGTTAAGTAATTTTATCGCTAACGATGCAGATGTATACGGCCTTGTTTCATT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTGTACTACCTATACGGGGTTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 52508-50101 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCE01000017.1 Syntrophomonas palmitatica JCM 14374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52507 32 100.0 34 ................................ TGTAGTATTTGCGGGTTGAGATTGGCGGGAATTA 52441 32 100.0 34 ................................ CGGTTCGCACAGGCAGTTTTAGCATTGGTGTGGT 52375 32 100.0 33 ................................ AACAACCCGTTCCCACGGTGCACCACAATGAGG 52310 32 100.0 35 ................................ TTAAATCTATGTCAACTGTTGCCAGTATTGTCACC 52243 32 100.0 36 ................................ CAAACTGAAGATCGAATGTTGCATCAGCTCCAGCGT 52175 32 100.0 34 ................................ ACAAATTTCATTTACTTCCATCCCAATTTTTACA 52109 32 100.0 34 ................................ TTTGTCGTTTTAACCTGTATGTCGTATGCATTTT 52043 32 100.0 34 ................................ TAGTCTGTTTTCTAGGTCATTGATTTTGTCAAGC 51977 32 100.0 34 ................................ CGAAGGAGGGTTAATCGTTTGATTCTTAAAGAAC 51911 32 100.0 35 ................................ ATGTTTGAAGGTATTGTTCAACACCCTACACAAAA 51844 32 100.0 33 ................................ TGTCCAGCAAGGCAAGTGCAGTAAAGACCGTTA 51779 32 100.0 34 ................................ AAAACGATATTCAGACCCAACAGCAAACCCTAGC 51713 32 100.0 34 ................................ TTGATCGGTAATTGCGCCATGCCTTATTTTATCG 51647 32 100.0 33 ................................ CTCAAACTTAAAACCCCTACATGTCATATCTTT 51582 32 100.0 34 ................................ AACAAAGTGGAAGGATTTCCCGGAGCAGATATTA 51516 32 100.0 34 ................................ ATGCTTGTTGAACGGTGCAAACACACCTTCAATG 51450 32 100.0 34 ................................ CGCTTATTTGCTTGCTGATGAACAAGTTGCAGAC 51384 32 100.0 33 ................................ TTGACCACATCCAACAATGGTCATTGCATCAGG 51319 32 100.0 33 ................................ ATTTATGCCGGCAATTATGGAATTTATGATGTA 51254 32 100.0 34 ................................ TGGTAGTTTATTGATGTCAAGTTCTGTCCATCTC 51188 32 100.0 35 ................................ ATACACCCTACCCTAAAAAACAACACACAATAAGC 51121 32 100.0 34 ................................ TTCTCTGTCGAAATTTTTGTTTATTTACTGGTTT 51055 32 100.0 34 ................................ ATATTGCCTTGCTGACATATAAGCGTCATAAGCC 50989 32 100.0 33 ................................ TGAAGCCTGGGGTTATGGGTTTTCGTCCGTCAT 50924 32 100.0 35 ................................ CAAGAGCAACCTCAACCAAACACCGCCGATATTTC 50857 32 100.0 35 ................................ TTTTTTATTGCCCTTTTTAGGTTGGCATTGTCTAC 50790 32 100.0 34 ................................ ATTTTAAATGGTTTACTTGTTAAGGCAATTCGTT 50724 32 100.0 35 ................................ TGATGCCCCCAATCCATATTGGGGTGGAATATTCA 50657 32 100.0 34 ................................ GGTTTGCAAGTATATGCCGTACTGTTGTTCTAAT 50591 32 100.0 34 ................................ TCAAAATTTGAAGCGTGGCTTGATTTACTTTTGC 50525 32 100.0 32 ................................ TGTAATAATGGGAATAAAAAGCCGCCCACATT 50461 32 100.0 34 ................................ AACCGGGCAGACGAAGAAATCACCGAAGAAGAAA 50395 32 100.0 34 ................................ TTCCATCAGTCCATGACGAACGGCTAGGGAGCCT 50329 32 100.0 33 ................................ ATGGCATCGTTTTCGTTATCAACCAATATCTTC 50264 32 93.8 35 .........C.....G................ TAATGATGTGCGATTGACGTATTGTCTGGCAACGT 50197 32 100.0 33 ................................ CCATTTAACCTTATACAGAGCATTATTACACAA 50132 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 37 32 99.8 34 GTCGCATCTTGCGTAAGCGCGTGGATTGAAAC # Left flank : TGTTTGTGAGGAATGTGGCGGCATAGTAAAAAAAGAAAACGTAAACGCAGACTACAATGCGGCAAAAAACATATCCACACCGTACATCGACCAGATAATAATGGAGAAGTGTTTAGAACTAGGTATTCCTTACCGCAGTATAACCTGTAAAGAATGTGGTCACATACAGGCTTCAGGAAATACCTGCGAGGTTTGCGGAAGTACTAATATTTTGAAACCAAAGAAAATTAGAAAAGCAAAATAATCGCGAACCCCAAGTTATAAAAAAGGTCTTTGACAACAAAACAAGTCATATCGCTTTAAAGCCTGACATAATTTACTCTGTTTCGCGCGCCAGGGCAGTTAGGTGCCCTAAAAGAGCGAAGTGGCCGAAAGGAAAGGCTAACGCTTCTCTAACGCTACGGCGACCTTGGCGAAATGCCATCAATACCACGCGGCCCGAAAGGGTTCGCGCGAAACTGAGTAATAAAACATTGCGGATGCGGCAATACAGAACCGCT # Right flank : AGTAATCGAAAAAGTGAGCTTTGAGTCGGATAACACATATTGGACCATATAGTCTCGAAGGATCTCATGAAATTAATAACGGCTTGTATGCAAGGAACAATAATAAAAAAACAATAAAACTTAGCACCGCCAGGATTTCGTTTTTAGCAATTTTAAATTTATAATGGTAATCGTTTTCGCTGGACACTTCGAGTCGCGTTTGTATTTCATCGGTATGCTGCAAAGAATTGGCGATAAATGCAGCCAGAATGTTGGACAATTCTTTTAGTTTGGATTTAAAACCAAGATCGTTATTCTTAAAAACCTGCCGTACCTGCTCCAAAATATCCTGTTTGAATTGACTTACAGACCGGGTCAATTCGTTCACTATAACCCTTGCCATATGCAAATGTTTTGCCACCGGAATACCCAGTGAATTTAAGGGAGAAAGGACCTTGCTCAGCATTTCTGTGATGGGCTGAATAGGAGTAGTGAAAAAATACAAGCTGCCGATATACCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTGCGTAAGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 54846-50855 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCE01000011.1 Syntrophomonas palmitatica JCM 14374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 54845 32 100.0 35 ................................ TATTATATCAGCGGTAAGTACGAATCCTGCTTTGG 54778 32 100.0 34 ................................ ACGTCTGGTGCTTGGATACTGTGATGCAGAAAAG 54712 31 96.9 35 ................-............... ACGGGGAAACTCATTGACAAATCGTTTGCACTCCC 54646 31 96.9 34 ................-............... TGAGATACCGGACTACTGGAAACGGTTTAGGAGC 54581 32 100.0 33 ................................ CTGGTGCCGCAGTTCGACGATAAACTGATATTC 54516 32 100.0 34 ................................ GGGCATGGAGATTATGTTTGATGCCGGACTAAGG 54450 32 100.0 34 ................................ CGGCTCGGAGAACGGCAGCAATTCCTCGGGGATA 54384 32 100.0 35 ................................ TTTTTGGCCAATGTATCTTTATACTCCTGAATCTT 54317 32 100.0 34 ................................ AAGTTTGACCCCGAGGAACTCGCCTATCTCCAGG 54251 32 100.0 34 ................................ TCCTTTCTGGTGTTCCCACGGTTCCGGGGTTGAG 54185 31 96.9 36 ................-............... TGCTATTTCTTTGCAACAAAACACTCCAATAAGCTC 54118 32 100.0 36 ................................ GCTGCTGTTCAGGTTGCTGTTCCTCCGGCTGGCTGG 54050 32 100.0 33 ................................ CGGCCTGCACGTAAATATCAAACTCAGGATAGT 53985 31 96.9 36 ................-............... TCAGCTATCTGGTCAGCCATAGCATGGGTATTCATG 53918 32 100.0 33 ................................ AATTATCCCCGGTGACGATTACGCTTCTGGCGG 53853 32 100.0 35 ................................ ATGTCCTTGGTGATTACATCAGATACCGGGTCCTC 53786 32 100.0 34 ................................ TGAAAGAAGGTGGCTAGTTTGAGAAACACCTATA 53720 32 100.0 33 ................................ GTCAAGCTATTTCCGGGCATAGAAAAAGCCGGT 53655 32 100.0 36 ................................ CACCACCTCTATATTGTATTCCCACCAAATAAGCCC 53587 32 100.0 35 ................................ CGTTGCCCCGGACAATTGCGGTCTTGGTATTTGCA 53520 32 100.0 33 ................................ CCTCCACAGCCTTGATATAGGCATAATAGAGAT 53455 32 100.0 32 ................................ ATCATTCGGCAGAATGATGTATATATTTGGTT 53391 32 100.0 34 ................................ AAGTGTTGGAATATCAGCGGCTCCATTCTTCGAG 53325 32 100.0 35 ................................ ATTGCCTCCCTGGATTATCTGGCGCACCACTCCTG 53258 32 100.0 36 ................................ GGAGAATCCAGGCTGCCACGGCGTGGTGCGAAGCGC 53190 32 100.0 35 ................................ CTAGTTCTACCGGGGCGAGTCCGGGCATTGTCCGG 53123 32 100.0 34 ................................ ATCATGCCTGCCCCCGCCCTGGCTTACAGCATGT 53057 32 100.0 34 ................................ TGCGGAAAGAAGCTGAAAGGAGGAAAACGATGGA 52991 32 100.0 34 ................................ GGGAATGATACCGATACATGATCCCAACCGCCGC 52925 32 100.0 35 ................................ TTTTTTTGTCTGCGCTCAAGGTGATACCCCACCTA 52858 32 100.0 34 ................................ GATTTACTGGCAAAACTACTTTTTTTTGACCATC 52792 32 100.0 33 ................................ CATCCTTCCGTAGTACCCGTTTTACCTCGCGGA 52727 32 100.0 34 ................................ TCCGGTAATCCGGTCCGAGTACCGGCACCTGCTC 52661 32 100.0 34 ................................ TCGAGCACGGCCATGCTAAGCGAGGCGGCGGCAG 52595 32 100.0 33 ................................ CCCTAAAACTCACGGTTGCGCAGGAAATTAGGA 52530 32 100.0 33 ................................ TATCTTCCATGCCTGGGGCCCTCCCGGGGAGGT 52465 32 100.0 34 ................................ AAAGTACAAGAAGAGAATGGAGGTACGAGCAACA 52399 32 100.0 34 ................................ GTTTTATAGCAGAAAAACAGGCCATTGAGAAGCT 52333 32 100.0 34 ................................ CGGGTTTCGCACCAAGAAGGACGAGTGGGATGAA 52267 32 100.0 33 ................................ ACTAGAAACGGGCGGCAATTCATACTGACCAGC 52202 32 100.0 34 ................................ AACTATCGTAGCGGCTGCGCTACATCCAATACCT 52136 32 100.0 34 ................................ TATGCTGACCTGCCGCTGGGTATCGACGAGCGGC 52070 32 100.0 36 ................................ ACGTAGTCTGCCTGGATCCCGGAGCAGACAATCCTA 52002 32 100.0 35 ................................ GAGAAGGTGTGTCAGCCGGTAATGCGGGGCCTTAG 51935 32 100.0 33 ................................ TTTGCCATGTCCCATCACAGGTAAAAGTGGGAG 51870 32 100.0 35 ................................ CAACGCTTAAGTGAGCTTTACGCTGTGAACGGTCA 51803 32 100.0 32 ................................ ACATCCCGGCTGCCCGGAGCTGACACACGGCC 51739 32 100.0 34 ................................ TCAATGCTCCATGGCACTAACGCTGCTCTGTCCG 51673 32 100.0 34 ................................ AGCGAGCACCCGGTCAGCAGCGATTGTTCTGCCT 51607 32 100.0 32 ................................ TGGTTGTGGCGGGAGTAGCCGCCGCCATAGGC 51543 32 100.0 35 ................................ TCTGAATATCTCAACCATTTTCGCAACATATTCTT 51476 32 100.0 33 ................................ ATGTCCTCGGACGTATAGAATGGCGCGTTGGCT 51411 32 100.0 32 ................................ CTACCAAATGGTATGATCACCATTGGTTAGAG 51347 32 100.0 34 ................................ TGGTTGGTATTGAACAGCGAATAAATGCGCTGGG 51281 32 100.0 34 ................................ GTCCTTCCCTTCAAGCTTTACTTTTTCGCGAGTT 51215 32 100.0 34 ................................ TTACAACTAAAAGTTTATTATCAGCTGCTATACT 51149 32 100.0 33 ................................ TTTTTCAAGCTCGTCTATCCGCCTATTTACACC 51084 32 100.0 33 ................................ AGAACAGACACATTCGTCACAACTACTAGGCAT 51019 32 100.0 35 ................................ ATCCCGGAATTGATGGCTATTACCAAGTTACTTAT 50952 32 96.9 34 .................T.............. TTTGGATGGCTGAACGATGAAGAAGTAATAGCAA 50886 32 93.8 0 ...........................T...G | ========== ====== ====== ====== ================================ ==================================== ================== 61 32 99.6 34 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TCTTATTACTTATGATGTAAACACCAGTACGCTAGAAGGGCAAAAAAGACTGCGCCAGGTGGCAAAACAATGTGTAAATCATGGACAAAGGGTGCAGAAGTCCGTTTTTGAATGTTTGCTTGACCCGGCACAATTTACGCGGTTAAAAAACAATTTAGAGAAAATTATGGACCTTCACAGGATAGCATCCGCTTCTACTTTTTGGGGAACAACTGGAAAAGGCGCGTAGAGCATATAGGTATAGCAGAATCTTATGATCCTGAGGGTATATTGATGATCTAAAGCCGTGCGAACCCCAGGTGCTCAAATCTGCTGAACCTGTTAAAACACAGTTCTTTCTCAATTTAATAAGGTTTTATCGGTATTGATTTCGCGGGCAGGGTATATTGAGGTGTTAAATAGAAAAATAACATACTTAGTGCGGGAAGTTTTTAATTTTACATTAGGTTCGCCCAAAGTAATGTTATAAATACCGAAAATAGTGCGATTGAAAGGTCGCA # Right flank : GCAAGGATTTGACCAAAAAATAACTGGAGAATAATAGAATTAAAAAATATAATAGACAAAGGGAGTCTGCAACGAATTATGAAATACAAACACATTTCCGGGGGTTGCGCTATTGAACACCAGATGCATTTTGGAAATAGACACGATTAAGAAAGCCCTTGACGCATATAGGCCATTGCCGGAGTCAATTAATAAAATCGTAAAAGAATATATGGATGCGGAAATGACATATCATTCACTGGTTTTGGAAGGTAATAGTATAAGCCTTGAAGAAACCAGGATGGTTCTTGCCGGGCAGAATATCCCTGGCAAAACTGCTAAAGAACATTATGAGATATTAGACCACAAGGAAGCCATAGATTATGTTGAAGCTTATGTACAGAGTAAAATGCCGCTGAGTGAAATGTTTATACGCGATGTACATAAACTTGTGATGAAAAGGACCTGTGCACAAGAAGCCGGGAAATACCGCGATGTTGAAATAGAAATAGTTGGGAGCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46568-48845 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBCE01000020.1 Syntrophomonas palmitatica JCM 14374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 46568 36 100.0 37 .................................... ACGATTTCGCCTGTATTATTCCGATTCACTAAAACTA 46641 36 100.0 33 .................................... TCTACAAGTTCCCACTTATCGGTTATGGTAACC 46710 35 97.2 33 ..................-................. TTGTTCTGATTCGTCGGTATAAATAACCTTAAC 46778 35 97.2 35 ..................-................. TTAAACTGGAAAAACGTTCCTACTGAGGCCCCAGA 46848 36 100.0 34 .................................... ACACGCGGCTGCCTTTTGAGGTTTCGCAAATTGC 46918 36 100.0 36 .................................... AGGTCTATCACTTGTCGTCCCTCCCTTCAGCCTTGT 46990 36 100.0 35 .................................... GCTTCAGACAAAAGTTGATTCTCCTTTCATCAAAC 47061 36 100.0 53 .................................... CCCTTTAAGGGGACGGAAACTTAAACATGCCGGTGGAGAAAATTTTTTACATA 47150 35 97.2 32 ..................-................. TCTATCTCTTTATTGATGGTGTCTTTTTGTGT 47217 36 100.0 34 .................................... GTTTTTAGATCGAGTAATTCGGATTCAATCTCCC 47287 36 100.0 36 .................................... GCAAAACGCTGAAGCTGTATATTTTTGCTCCAATTC 47359 36 100.0 33 .................................... TTCGTACCACATTTTATTGCGGCAAGTTTCTCC 47428 36 100.0 32 .................................... AACTCGACTTGTCCTTTAATTTCCATGTTTTT 47496 36 100.0 36 .................................... CCGGGGACGGACGCGGCGTTGCTGAGCATCATTATT 47568 36 100.0 39 .................................... CTGCGCTGCCGTCCAAATGATTGAACCAACGGCAAAAGA 47643 36 100.0 39 .................................... CCCCAGTCGCCCTGCCAGGTTCCGTCCCCGATGGGGCGG 47718 36 100.0 39 .................................... TTCCAGACCCGCAGGGTCTAAAGGATTTACTTCATTCCC 47793 36 100.0 35 .................................... TGGACAAGGAGTGTTTATCGACATTATGCCATATG 47864 36 100.0 38 .................................... TTTCCCTTGAAAATTGCTTTCCAGGGAAAAACAATCAA 47938 36 100.0 36 .................................... CCAACATTTCGATATACCAGCCATCCAGTTCGCCAT 48010 36 100.0 35 .................................... GTCGCCGGGAACGGCGTCAGTGAACACTATATCGG 48081 35 97.2 37 ..................-................. GGCAGTCTAGTACAGACTCCCCGCGGCCTCCACCTTA 48153 36 100.0 37 .................................... TACTTTTGCAAAATGCGCTTGCAACGTGTTTTTGTTC 48226 35 97.2 37 ..................-................. GCCCTCTGCCTCCACCTTATCGGAGGCCTTTCTGAGC 48298 36 100.0 36 .................................... CTGGTCGCGGCTACTATTTTGCCGTTCTCCACCAGG 48370 36 100.0 36 .................................... CGTATGCCCTGGTAGCCGGTACCACATGCGTCAAAG 48442 36 100.0 39 .................................... ATTACCGTTGTCATCGGTATAATCATGCTGGTATACAAG 48517 36 100.0 36 .................................... GCCCATTCTTCGGGCGTTACTGGTTCCAGGCTTACA 48589 36 100.0 39 .................................... AAAAACAACCTGGACCGTAACCGCAGGTGCGGACCTTGC 48664 36 100.0 37 .................................... ACTCTCCACCGTCCCGGCATTTGTCGCCGGGAACGGC 48737 35 97.2 38 ...............-.................... CGGGGTAACCGGGGACTGGAGAGTAGCGGGTATAAAAT 48810 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================================== ================== 32 36 99.4 37 ATTTGAACGGAAGGACCCCTTTAAGGGGACGGAAAC # Left flank : AGGCGTTATAGCGCGTTTGTTCAGGATATATCCCTGGATGATTCGAATGTTATGCAGGAAGCGGCTAATCATATGCGCATTGTAAGGTATTCGCTTCGTTCAGCTGTTTATTACCTGGATAACACCAAAATAACCGGTTATACAGGCAAGATAACCCTGGTGCTAAATGGGCCGGAACAGCTTGCTCGTCTTAGCGGAGCCTTGTTGTCATTTGCTGAATACAGCGGCCTGGGGATTAAGACTGCCCTGGGAATGGGGGGGGTGAGAGTAAACCAGGTATCATAAAATTTTGTGCGTTAGAGATAATTAAACCGCTATGGCTTTAATATGTTATGAATGACCGCCGCCGAGAGCAAAAAGAAGAAAAACGAAGAAAATTGAAGGTATTATACAATGGGGAAATAATAGCCTTGAACAATATGGATAAAAATGGCAAAAACATTTTTAGCGCCGCAAAGTATATTTTTAGAGCTGCTGTCATGAGGGTTTGCGAAGACAGG # Right flank : AATCTATTTGGGTTCGGGGGTGTTTTTATCAGCTTTTTATATGTTTATGAACGAGGCGCTAAAATTGGTGTACAGAATAATTGCGTGATTATCGAAAGCGATAATTTAAAACGTACCCTGCCGATAGAAGGCATAGAAAACGTAATAATTTTTGGCGATACCAGCCTGAGCTCTAACTGCGTCAAGCATTTTATGGAACGGGATATCAACCTCACCTGGCTGTCAAACCAGGGACAATTTTATGGACGCTTGGAATCAACGCGCAGTGTAAATATCTATCGCCAAAGGCGGCAATTTGCCTGCGGTGAGGATGAAGAGTTCTGCCTGACCCTGGGAAAGAAGATTATTGGTGCTAAAGTTAAGAACCAAATCACTATACTGAGGCGTTACCAGAGAAACCGGCCGCAAAGTTCAGCTCAAGCCAGTATTGACGCTATGAATAAGCTCCTGCCTATTATAAATAAAGCAGAATGCCGGGAGGAACTGATGGGGTATGAGGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGAACGGAAGGACCCCTTTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //