Array 1 1918939-1917847 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_015964.1 Haemophilus parainfluenzae T3T1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1918938	    36	  91.7	    30	.GGA................................	TCACTTTGGAATTTAACCTGATCTAACTCA	
   1918872	    36	 100.0	    30	....................................	ACTACACGTATCGAATTAGATACTATTTTT	
   1918806	    36	 100.0	    30	....................................	TTTAGATAGACTGTATAACAGCCGAGAAGT	
   1918740	    36	 100.0	    30	....................................	CGAGGCGAGAGAGCAAAGAACACAGCTTAT	
   1918674	    36	 100.0	    30	....................................	TTATCTACGATTGGTTCGGGTGGTTCTGCT	
   1918608	    36	 100.0	    30	....................................	ACAAAATCCCAAGGCAATACTAAGCGAGCA	
   1918542	    36	 100.0	    30	....................................	TTTTCAGGCATAAAACCGCTACGGTTACAG	
   1918476	    36	 100.0	    30	....................................	ACATTCGGATTCTTCAAAATGTCTATTACG	
   1918410	    36	 100.0	    30	....................................	GATAAGGCACCAACATTTGTTAGCATTTCA	
   1918344	    36	 100.0	    30	....................................	TTTCTATTGCGAAAGATGCTAAACTTAAAT	
   1918278	    36	 100.0	    30	....................................	AAAAACATAAAACATTAGAACAACAAGAAA	
   1918212	    36	 100.0	    30	....................................	CAATTAGATATTGATGCAGCTCGGCTGAAA	
   1918146	    36	 100.0	    30	....................................	TGTGGAAAGGTTGGAAATGTAAACAGATTA	
   1918080	    36	 100.0	    30	....................................	AAAATTAAAATGTAAACACAATATAACAGT	
   1918014	    36	 100.0	    30	....................................	GTCATATAGTCCGACAGTTTACGGACATCA	
   1917948	    36	 100.0	    30	....................................	ATCTCAATCTTTGCATTAATCGTTTTCATT	
   1917882	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.5	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   CTTTGACCTAATGCAGGAAACCTTGCGTATCACCAATCTCGGTAGCTTAAAAGCAGGAGATTTTGTGAATATCGAACGTGCAATGCAAATGGGCGCAGAGATTGGCGGGCATATTTTATCGGGTCACGTTTATTGTACCGCAAGCGTTTCACAAATTATCGAAAGCGAAAACAATCGTCAGGTTTGGTTTAAATTACCCAATAAAGACGTGATGAAATATATCCTTACGAAAGGATTTATCGCGATTGATGGTATCAGTCTTACTATCGGTGAAGTAAAAGATGATGAATTTTGCGTGAATTTAATTCCTGAAACTTTACACAGAACCCTGATCGGTAAACGCCAAATTGGCGATTTAGTGAATATTGAAATTGATCCGCAAACACAAGCAATCGTGGATACAGTGGAACGATATTTAGCAGCTAAAGCTTAATGAGAATAAAAAAGTGCGGTAGAAAACAATGTTGTTTTTTACCGCACTTTTTATTCCTCCGAAGGAA
# Right flank :  AGGGACAGCAAAAAGCCCCATGCCGTAAGGTTTAGGGGCTTTTGTTTTGTCTAAAAAACGGCTAAAAAAGCAATAATTGATTTGAATTGACCTTTTTTTCTTGTGGTTTTTTCTCTCCTACTAAAATTTCCATACTTGCAAATTGTTTTTCTGTAATAGATAAACATCGAATAGATCCTTCTTCAGGTAAGTGTGCGACGAGTCTTTTATGATGTTTTTCTAACGCATCTCGCCCTTTAATAATTCGCGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGGCGAAATTGGTTTGCTGCCCGCATTTTCGCTTTAGTGGTAACCGGTAAGTCAAATAAAACGATCATACGCATAAATACCCCCTCACTCATATTGATATTCCTGCAATATATCAATCTCTGGTAACTGCAATAATGCTGCGTTTTTTTTAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACACT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.77   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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