Array 1 5975-5471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJM01000017.1 Gallibacterium genomosp. 3 strain F151 contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5974 32 100.0 37 ................................ TGTAGTTGAAGTAATAATAGACGGGAAAAAAGTACAC 5905 32 100.0 35 ................................ TTCATCTGTCCACTCACCGTCAATCCAAACGAAAG 5838 32 100.0 35 ................................ TATCTCCATTCACCGAAAATGAGATGCTAGTGAAA 5771 32 100.0 37 ................................ ACACTTTTTCAGGTAAAAATGATCCATTTGTAAATCG 5702 32 100.0 34 ................................ AGCAGTTGCATCTCTCAAAAAATCGAAATCAGAA 5636 32 100.0 35 ................................ ATTGTATTCTGCCGCAATTGTGAGTTTGAACGGCT 5569 32 100.0 35 ................................ ACACTTATAGGTAAAGATCTTCACAGGGATAGGTA 5502 32 75.0 0 .....C..C....T..G...AAA........T | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.9 36 GCAGCTACGTTCGCGTAGCTGTGTGTTGAAAC # Left flank : ATCGTTTTATGCATATTCCAGAATTAATTCGGATGGGAGCAAAAGCCGAAATTGAAGGTAATACTGCAATTTGTCATGGCGTGGATCATCTTAGTGGTGCTGAAGTAATGGCAACAGATCTCCGCGCTTCTGCCAGTTTAGTCATTGCGGGGTGTATTGCACAAGGTGAAACTATTGTTGACCGCATTTATCACATTGATCGTGGTTATGAACATATTGAGGAAAAGTTACGTGGATTAGGTGCTCGTATCGAGCGTTTTTCTGATGCGGAAACTGCATAGATATAATCATTATTAATTTAATTTGTCGAATCGCTAACCTCTTGTTCTCATAAAAAAAGCAATAGGTTAGCGATTTTTTTCAGGCATTGTAATACTTGAATTAAACAAAATAAGTGTAACAAGAAAAGTAGGTTATACTTATGTTTGATCCCTATTTTGGATAAGTTAGCGAATGAAGTATTGTATAGACTTGATTTGCAAGCTTTAGTGAAGTAGGGA # Right flank : GGTATAGGTAGGGATAGGTAAGTACGTTTATCTGAGAGTAGTAGCCAAATGCCAAACAATAAAAAATCTGCACTTTAATGTAGTAATAATTAAAGTGCAGATTATTTAAAAAAGTTTGGTTTAGTTAAACAACTTAATTTTTTTGTTGTTTTTGATAAGCGTAAGCTGCTTTAATAAATCCTTCAAATAATGGATGTCCATCACGAGGTGTTGAAGTAAATTCTGGATGGAATTGGCAAGCGACAAACCAAGGATGATTTGGCACTTCAATAATCTCAACTAGTTTCTTATCAGCTGACCAACCAGTAACTTTTAAGCCCGCTTTTTCGATTTGTGGAAGTAACTTATTGTTTACTTCGTAACGATGACGATGACGTTCTTCAATGGTTTCTTTACCATATAATTGGCGAGCTAGGCTACCTTCCACAAGATGGCATTGTTGAGCACCAAGACGCATTGTACCGCCAAGATCAGATTTATCACTGCGTACTTCAACATTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACGTTCGCGTAGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.60,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 137620-137947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJM01000002.1 Gallibacterium genomosp. 3 strain F151 contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137620 28 100.0 32 ............................ ATTACCTTTTATTATTAAGGCTGTTAATGAAT 137680 28 100.0 32 ............................ AGATCGAAAAATTACTAGACTAAAAATAAGGT 137740 28 100.0 32 ............................ TGCGACAACACCGTCCCACATTGTGATTAAAT 137800 28 100.0 32 ............................ AAATAGAGCGGATTTTTTCGGAAAAATGAAGC 137860 28 100.0 32 ............................ ATTGCGAGTTCTTTGCCCATATCAAGGGTGAT 137920 28 82.1 0 ....................GAA.A.T. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATCGTTGGTGCAGTATTAACAGGTGTATTTGTATCAACTGATATTACCGGTGGTGACGCAAGTGTACTCGCTCAAATCGAAAGTGTTGTGATCACCTTAATTTACAGCAGTGTTGTTTCTTGCTTGATTCTTTGGGTAATGAGTTTATTCATGGATATCCGAGTGTCTGCTGATGAAGAACGCCAAGGCTTAGACTTAATCTCTCATGGCGAACGTTTAGAATAGTTTTTAATAAGCATAGTAGTTGTTATATTGACAATGTTTCTGCACCGTAAAGGTTGAATTTCAACTGATGAAGGTGCAGTTTTTTATTTTTATCTTTTCAGTTTACTAGCCTCCAACACACTGCTCTTTTTCCTTATATTCATCCCCTTATTTTTTAGTATCAAATAACCAATTGATTTATAAGTAATTATATTTACCTTATAAAAAAGGGTTTATCTTTAGATTTGTAGTATAATCCCTTGTGGTTCTTGAAGTTATTTTAACTTCTGTTCTA # Right flank : AAGCAAAAAATTACCCTATAACGTAAAACATTATAGGGTAATCATAACTAGATAAATCAACTCAACTAAAATTAGTTCCAAACTGATTTCATTACTGTTTTATAAGATTCGTTAAGGTGATTAATTAATACTTCAAACATAGCGTAAACTAAATCACCATTAATTTTATCCCCTTCTGTTAATAAGCAAGTATCTAAAACAATTGCATTATCATTATCTAGATAATATTTGAATGATTTATACTGTTTATTAAAGTCATTTAATAATGCTTGCACTTTTTGTACTGCTTCTTCTGATTCTACTTTTGGTGCAACTAATACACGAATCATTGCATAAATAGAATCATCTAAAATAACGATGGTAGGTAATTGGTTGCCGCCAATATCAAGATGGGAACGAAATACTACTGTATTTAACGCATCATCAGCAATTTCTTCAACAACAAAAGCATCTACTTTCGCATTATCTAAATAGCTTTTAAAGCTTTCGGCTTTTTTATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35074-35402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJM01000003.1 Gallibacterium genomosp. 3 strain F151 contig000002a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35074 28 100.0 33 ............................ AATGAATTAGTTGAATCATGGAATGCGTCTAAT 35135 28 100.0 32 ............................ TTCGATAAGACTGATGACTGTCGCATTAACTT 35195 28 100.0 32 ............................ TAGACGCTTACCGCCATCGCCTTGTACCGCAC 35255 28 100.0 32 ............................ ATTGCCAAAGTGGTATGAAGAGATAAGAAGCA 35315 28 100.0 32 ............................ TTGTAATTTCGTTCAGTAATCCAGTGCTTGGA 35375 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTGCATTACATCTAGATCCATTACAAGATTATTTTATAATCAATGCAATTACTCCTGTTCCTGAAAAAACAACTGCTGTTCGTTACCAAAGAATCCAACATAAGGGTAATAGTGCATTAAAACGAGCTGAAAAGCGGATGAAAGCAAGAGGTAATTTTTCTGATGCAGTTTTAGAAAATATGCGTCTAAAACAACAGCAGGTAAAAAGATACCCTCATGTATTTTTGAAAAGCGCGAGTACTAAGCAAACTAAGATGTTACTGGAAATAAAACGTGTAGTTTGTAGTGAACATCGAGAAGGGTTATTTACCGGTTATGGGTTAAGTAAAGAAGCAATTGCAACTACACCACATTTTTAATATAGAAAACCCTTTTTTTTGAGCAAAAATATATATGTTAAAAATCAAACACTTATATAAGACCTCAAAAAAAGGGTATTTTTGATTAAAATGCTCTTTAACAGTTTATTTATCTTATTTGTAAGGGCTTTGATCTCTA # Right flank : TCAAAATCACTACTCCACCGCTATTTATTTGCCTTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48-1039 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJM01000029.1 Gallibacterium genomosp. 3 strain F151 contig000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48 28 100.0 32 ............................ ATGTTGGCGTTTTTGCTTTTTTAGGTACAATT 108 28 100.0 32 ............................ AAATAAGGCTTGTGCAACCAATACAATCCAAC 168 28 100.0 32 ............................ AATCTTTGGAAACAATCAAAAAAAATTAAACC 228 28 100.0 32 ............................ AATATGCCATTCTTAAGTTTAAATCATAAGCC 288 28 100.0 32 ............................ AATTAGCTCGTGTGGGGCTTTACCGCACGCTC 348 28 100.0 33 ............................ GAGAAATAGCTAAATTGTCTAGGGCAGCAGTAT 409 28 100.0 32 ............................ TGATGCCTCCGAAGAAGTCATCAAAGAAAAAT 469 28 100.0 32 ............................ GTTTGCGGATAATCACACTGTTTGCATCGTGT 529 28 100.0 32 ............................ AAAATGACTGCTGCAAGCAAACGGATTTTACC 589 28 100.0 32 ............................ TCATTAATTGTATCTTTAATTAGCTTGTAATA 649 28 100.0 32 ............................ TTGCCTTGTATTAGGTAAACAGGCTAAACTTA 709 28 100.0 33 ............................ AAACAGATCGAACAAGTAAAAGCGGAGGCAAAA 770 28 100.0 32 ............................ TGCTGCACCTGTAATAACGTTAATATCGCCCT 830 28 100.0 33 ............................ AAGGGGGAGTGGCTTTCGCAGCACATACTCCTT 891 28 100.0 32 ............................ TAAGCCCAAATGAATTACCCTCTAAACAAGCC 951 28 100.0 32 ............................ ATTCATCGGATCAATACCTGCTGTTTTTAGAC 1011 28 92.9 0 .........................CG. | T [1032] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TAGGCAGCTTAGAAAAATTTCTTCGTAATGACACCCGATTTGAACCAC # Right flank : ATTAAAGGCGAAAGAAAATGGGCTTTGCTACCGTAAGGCAGCTTAAACCTAATTATTTGTATCTATTCTTATTTAAAAAAGCTTTAAAGCTGTTTTAAACCCTATTTAAAATAGTCAACTATGATTTTTCTATATCTAACCGATATAAAAAATCTATTGCTCATTTTCTTTCTGCCAAAATCCTAAAAATTCATTAAATTGCCAAATTGCTTCTGTTTGTGAATCTTTAGTTAAAGAGGCCGTTGCATATGAAACTGCAACTTGCTCAAGTTCTTTATTTTTTAACTCTTCCGCTAATTCATCCAATACTGTTGCGAGTGAAAAATTAAGCCATGGCTTAATTTGTGAATTTGTCAATTCAAGTGGGCGATAATCAAAACGATGATATTCTTTTGCACAAGAATAAGGATCTTGAGATGCTTTCTCATAATAGGCAAAAGCATAATGCCACTCACTTAACTCATCAGGTAAACAGACAAACTCCTCCATCGGTTGAGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14206-12435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJM01000007.1 Gallibacterium genomosp. 3 strain F151 contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14205 32 100.0 35 ................................ TTATCAAAATACTTAATGATCCCATCTGCTCGTTG 14138 32 100.0 34 ................................ GATTAAATTAAAATTAGCTGCAAAAATTAAAGAA 14072 32 100.0 35 ................................ TGTATAAAAAATAAAGGTGGATAATGAACAACTGG 14005 32 100.0 36 ................................ TCTTATAAAGCAAACTAGTATGAGTGATGATTGTTG 13937 32 100.0 35 ................................ AACTAAAGAAGGGAAACAGGCGTTTAAAAATACTT 13870 32 100.0 35 ................................ CGCAATTAATCGGTGAGCTGCATCATTACTACTTT 13803 32 100.0 35 ................................ AGAATATAGCAAATTTATGGGGATCTGCAGGAGCT 13736 32 100.0 36 ................................ TGACACTCTAAATAATTAGTTTTTAAATTTAAATAC 13668 32 100.0 34 ................................ TCTCAGCTTGTAGGATTGATTGTGAAACAGTGAT 13602 32 100.0 35 ................................ AGAGATAAAATCATTGTTTGATAAAGCCCTTGCTG 13535 32 100.0 35 ................................ ATTTCGCAGGGAAATTTCATTATTTTGAGTCACAA 13468 32 100.0 36 ................................ CATGGCGTATGTCTATGTTAATGGAAGGTGATGGGT 13400 32 100.0 35 ................................ TTTGATGACTCTAAAAAAATAACCAGCAGAAATAC 13333 32 100.0 35 ................................ CTCTGTTTTTGCACTAGAATTGAATTTATTAATTG 13266 32 100.0 34 ................................ GTCTAAAATTGTCTAGATTTTGTCTAAGTTAGAC 13200 32 100.0 36 ................................ AGGGGTAAATAAACGTGAGCGAATGGCTAGAAATCT 13132 32 100.0 36 ................................ TCTTTGATATTGATGCACTTAAACGCAAATACAGTC 13064 32 100.0 35 ................................ CTTGTTAGCAATACTGACAGGACTTGTCCCTGAAG 12997 32 100.0 35 ................................ GGATTAATAATCTGTGGATTAAGACGCAATAACTC 12930 32 100.0 34 ................................ ATTAATCAACACATAATCATCTGTACTGAGTGCA 12864 32 100.0 34 ................................ TTAAGGCAAACTATGATTTAAGGAAGAGATTTTC 12798 32 100.0 34 ................................ TTTACACCAGTTATTGTTACCACTCCACCTATAC 12732 32 100.0 34 ................................ AGTCGCCAACTCAAGATGCGGTTAATACATTTAC 12666 32 93.8 35 ........C...G................... TGCAGTCTTGATGATTTTTTCTTAACTCTTGGCAA 12599 32 96.9 35 ...A............................ GATTACGAAGCTACGCTACGTCGAGCAACAGATGA 12532 32 93.8 34 ........C...G................... TTGCATTTCTTTTTGCATAGACTTTCTCACGTTT 12466 32 93.8 0 ........C...G................... | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.2 35 GCAGCCACTTTCACGTGGCTGTGTGTTGAAAC # Left flank : TAGGAGTAAAAATACTATGCTAATGTTGATCACTTATGACATTGCTATGGATGACCCATTAGGAGCTACTCGATTACGCCATATAGCAAAACACTGTCTAGACTATGGTATACGTGTACAATATTCCGTTTTTGAATGTGACATTACGCCAGATCAATGGGTAAAATTAAAAGCTAAGTTACTCGAAACATACAACCCCGAGACAGATAGCCTCCGTTTTTATCATTTAGGTAGTAAATGGCGACGAAAAGTAGAACATCATGGTGCAAAACCTGCAATAGATGTTTTCCAAGATATACTAATTATTTAATCGCTAACCTCTGGTTCTCATCAAATTCCTTGAAGATTAGCGAATAGAAAAAGTTCTTTAATAATCAATTAATTAATTTGAGTATAAATATAGCTAAAACTTTGTTATATTTTTTATGATCTCTATTTTAGGGACATTAGCGAATTAAAGGTTCTCAAGCCTACAGTAGCAAAGGTTCTTAAAATAGGGA # Right flank : TTCATCATTGACTTCTATTTTAATCATAGTAATATCCAAAAGAGTGGCTAGAAAAGCGATGAATCCTGCCTATCGCTGCCTCCTAACGGGCGTTAGGGTGCGAGTGCGTGTGGGGCGTGGCAGTACCCCCTAGTCACTAATATTTTTACACCATTCTTTTTTATTTACTTGTCACATAGATTGTACTTTTCGTGTGGCTGTGTATTGAGATATATCTCCCTAGCCCCTCTTGATAAAAGAGGTAAAAAATACCTAGTCATAAAAAAATAGCTGGCTAAACAGCACAGCTATCTTGATTAACGCAATGAAATTGATTGTTCTAGTTACTTACCATGGATAATTTCAGCAACTTCTACTTTACGATTTTCATAACGAGAACGGGTACAAGCATCCGCTGTGGCAATCGCTGCGCGAGCAGCTTCACCGGTAAGCAATTTTTCAAACTCTGCTGATGGTTTCATACCATGCATAATATCATTAAGGTATTTCATCTCTTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACTTTCACGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.90,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67387-67773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJM01000005.1 Gallibacterium genomosp. 3 strain F151 contig000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67387 28 100.0 31 ............................ AGGTTTTTTAGGGTAGCTGGGGGGGGGTTGT 67446 28 100.0 32 ............................ TTTGAATTTTTCAAACTTTGTTTTGTGATTAT 67506 28 100.0 32 ............................ ACTCTTTGAATCAGCTTGTTTTAATACATTTT 67566 28 100.0 32 ............................ CGCTACAAACATAATAGAACACGAACACTACC 67626 28 96.4 32 .........C.................. TGTAAGCCAAAAATGATGTTTTTCTGTGAACA 67686 28 96.4 32 .........C.................. ATTGAGGAACGAGAATTGGTAAACCGAAATAC 67746 28 96.4 0 .........C.................. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 CTTTACTGCTGCATAGGCAGCTTAGAAA # Left flank : GGTCTTGTCACTTCAAAAAGTGGTGAATTAGAAGATAAAGATGCCATTATTGAACGTATTAAAGAAGCAACTCAATATGTTGATATCAACCAACTTTGCTTAAGTCCACAGTGTGGTTTCGCTTCTACTGAAGAAGGAAATGTATTAACTGAAGAACAGCAATGGAAAAAACTCGAATTCATTCGTGAAATTAGCGAAGAAGTTTGGGGCAAATAATTAATTTTGAGCGATTTATCCAATAGCCACATCTAAAAAATGTGGCTATTTTTATTTAGTAGCCAATCAAAACCTTTACAACTCATTTTGATTACCTTACTCAGTAAATAGCCTAATTTTTAAATTGTTCTCCCAATTCTCTTAACTCTAAAAACCCTTATTTTTTGGAACAAATTAACTATTTGATTTATAAGTAATTATATTTACCTTATAAAAAAGGGTTTATCTTTAGATTTGTAGTATAATCCCTTGTGGTTTTTGAAGTTATCTTAACTTCTGTTCTA # Right flank : ACGTATTATCTTAGGAGATAGGCACATTTTTACTTATAGGAAAACAAAAATCCCAGCCTAAGCTGGGATTTTTACATCAAAAAATAATCAATTAATTATTTTTCAACTGTTGTTTGGTGTTGACCACTTACAGAAACTTCAACACGACGATCTGGTGCTAAGCAAGCGATTAATGCTTTACGACCTTTAACTGCGTCACATGTATTACCAGTTACTGGGTTAGCTTCGCCGTAACCTACTGCTTTGATTACATCTGGAGATACAGATTTAGAAACTAAGTAGTTAGCTACAGTGTTAGCACGGTCTTGAGAAAGTTTTAAGTTATATTTGTCAGAACCAATACGGTCTGTATAACCTGCAACTTCAACAGATGATAAAGAACCAACTTTAGAAATTTCTTGTTGTAAGTTATCTAATGATTGTGCTGCTTCTGGTTTTAAGTTTGCTTTACCGAAAGCAAATAATACATCAGAACTTAATGCAAATTTCTTGTTAACAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCTGCATAGGCAGCTTAGAAA # Alternate repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //