Array 1 131296-127604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQK010000076.1 Xanthomonas melonis strain DMCX contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131295 28 100.0 32 ............................ AGCCCGACGGTGAACTGGCCTGGCGCTGGGTC 131235 28 100.0 32 ............................ ACTTGGGGGCGGCTGGATGGCAGGCGATCATG 131175 28 100.0 32 ............................ AGCAGGAGCGCACCGAGTGGCACAGGGTGACA 131115 28 100.0 32 ............................ CGAACCCGCAGGGTTGGGCATTTAAACGGTGG 131055 28 100.0 32 ............................ AGCGAAAAGGGGCTGGCCGCCCTGGAAACAGC 130995 28 100.0 32 ............................ TTCCGGCCTTCGTTGAGCTTCGCCACCATGCC 130935 28 100.0 32 ............................ TTCGTGGTCATCGTGTAGAGCGGTTCGGCACC 130875 28 100.0 32 ............................ CCCGAGCAAACCGCAGCTTGGCCGCGCACGAC 130815 28 100.0 32 ............................ AATGGCTGACGTACGCGAACTACTGGCACGAC 130755 28 100.0 32 ............................ ATTGGTCCGCGCCTGGGTGGGCGGGCTGCCTT 130695 28 100.0 32 ............................ GCGTATGAAGCCGCTGGCGTACACCGTGACTT 130635 28 100.0 32 ............................ ATCACCGCCGCCATCGCCATCACCGCCGCCAT 130575 28 100.0 33 ............................ TTCCTGCCTTTAACGTCTGCCATTTCGTGCCCG 130514 28 100.0 32 ............................ TGGACGTGAGCGACCCCGACGGCGCCACGATC 130454 28 100.0 33 ............................ CAGCGCGCAGCCGGCGCGCGCGCAGGGCCTTCT 130393 28 100.0 32 ............................ CGTTAGCCGGCGGCCGGCCGCGACGCTTGGGC 130333 28 100.0 32 ............................ ACGCGGGTGAGCGGCCTGTGGCCCCGTATCTG 130273 28 100.0 32 ............................ TGTTGGACCGGCGTGCGCACCTGCAGCTGCAG 130213 28 100.0 32 ............................ AGGCGCTGCTCAGGCGCCACGCGGGTGAGCGG 130153 28 100.0 32 ............................ ACAACGTTTGCCGTGGCACAGGAGATTCCAGA 130093 28 100.0 32 ............................ ACCCGGAGCAACGACGGTCGCAGTGCGCGCAC 130033 28 100.0 32 ............................ TGATCATGACGACTCTTGCAAATGTGGTTGCA 129973 28 96.4 32 ............A............... TTGGACGTTGAAATCATCCGGCCCTTGTCGTC 129913 28 100.0 32 ............................ GAACAGAATAGCGCAATCAGGGGGTCGATTTT 129853 28 100.0 32 ............................ GAATGGAGATTGGCGGATGCGTGATCGCAAAC 129793 28 100.0 32 ............................ GCTTCGCATGGCCGCAGCGCGCTGCGCTCACC 129733 28 100.0 32 ............................ ATCGGCATGATGCCGGCGACGGGTAGGGCGAA 129673 28 100.0 32 ............................ CGACCGCGTGGCCGATGGCGCTCATCGATCGG 129613 28 100.0 32 ............................ AGCACAGCAACAGGCGCGGGCGGGGCATCGTA 129553 28 100.0 32 ............................ ATCACGCAGCAGCCAGGCGAAAGCGGCGAAGC 129493 28 96.4 32 ..........A................. ACCGAGGAATGACGCACCCATGTTGCGTGGAT 129433 28 100.0 32 ............................ TAACAGGCCGCAGGCACGCCGAAATCGGCGCA 129373 28 100.0 32 ............................ TGTGCATAGTCGCCACTGGCAATAACCGACTC 129313 28 96.4 32 ......A..................... CACCCGCACCGAGCTCGCCGGCCTGGTGGATG 129253 28 100.0 32 ............................ TTGCAGCGCTTGGCCACCAGCGGACCCCAGGT 129193 28 100.0 32 ............................ TACGGAAAGCTCAATCGAGACTTGCCGGATGG 129133 28 100.0 32 ............................ ATTGCGCACCTCCTCCAGTGCCTCATCGACCG 129073 28 100.0 33 ............................ CGGTAGCGCCGGGCAGGATCTGCTCTGCTCGCG 129012 28 96.4 32 .............C.............. TACAGCGACCTCTGGAAGTAAATCATGGCGAA 128952 28 100.0 32 ............................ GCAGGCAGCTATGCCCGCGCAGAATGCCTTCG 128892 28 96.4 32 ...........................G TTGCGCACGTTGATGCCGACACGCTGGGTGTC 128832 28 92.9 32 .......A...................G GGTCAGTCCGGGCCAGTAGATCATCGATAAAA 128772 28 96.4 32 ...........................G CTGCAGCACCGCGCGCAAGGTGCCCTGGGTGC 128712 28 96.4 31 ...........................G AAGTCGCGGTCGGCGTTGATCACCACTCCTT 128653 28 96.4 32 ...........................G ATACATGCGCGCCTCGATCAGTGAGGAACTCA 128593 28 92.9 32 .........................G.G GATCGAAAACGACGACGGCAAGCCCGCACCGC 128533 28 100.0 32 ............................ TGCGCTCGGCCGATTGCCGACCAGGTGGCAGA 128473 28 100.0 32 ............................ TCGCTGATCCTGCGCGGTGCCAAGCAACCTGA 128413 28 100.0 33 ............................ AGCTGGGCTTCACCACGCTCATCTGCATCCTGT 128352 28 100.0 33 ............................ CGGCAGCGGTGCGTCATCCGGCCATTCCTCGAC 128291 28 100.0 32 ............................ TCTTGCCATCGCGAATGTCCAGCCCCGAGGCG 128231 28 100.0 32 ............................ AGATCGTCTGGCACAGGTTTGAGGGCGTGAAG 128171 28 100.0 32 ............................ ATCGGCCCCGGTAGCATATGCAGCGGCATCGA 128111 28 100.0 32 ............................ AAGGCGAAGGCGGTGCTCGAGGTGATGGGCAT 128051 28 100.0 32 ............................ AGCTTTGGCGCCCACCAGGCCGGCTTGCCGAT 127991 28 100.0 32 ............................ ACGTAGATTGCATCGCCCCGGTCTTGAAGACC 127931 28 100.0 32 ............................ GATGGCGCGGCGGTGCGGGGCGAGCAGGTCCA 127871 28 100.0 32 ............................ TCTACAGGCTGCGCGATCAGCGTCGGTGCCTG 127811 28 100.0 32 ............................ AATCATCGGGCGCAGGCTCCACCCCGGCCAGG 127751 28 100.0 32 ............................ TTGCACTGTTCCGACCAGCCCAGGCGGTAGGT 127691 28 100.0 32 ............................ TTGGCCAGCGCCGCACTGCCGCGCACCGTTGC 127631 28 92.9 0 ...........T...............C | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.2 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CACTGCCTGCTCCTGAGTCAACATCAGCAGCCTTCAAAAGGCCACCATCGTGGCCCAGGTGGGTCACTTTTACTTCGGCGCTGTGGGTCAGTTTTACATCGGCGCTAACACCCTGG # Right flank : TGCGGGTTGTCGACTTTGCTGTCGCCGCCGATTCAAGTCTGCCCCATTCCGGCTGGATCGCCGAAGTAAATCTGACCCTCCCGGGTTCAATCGCCTGGGCATACCTGCGGTGTCGCATGGCACTGTCGATGCAGTGCATACCGGCTGCGCAACTGCGGCGTGCGATGCGGCACTACAGGCAGACGATGGGTCGTGCTGCGGCGCTGCCGAATACCCATCACTCGCGTCCGTAAACCCCCAGAAACATCGCCACCGCCGATTCGGCCACCTGTGCCTGTTGCTCGGCCGACAAGGGGGGCTGGCCGAAGGCCAGCTGCGGCCAGAATGCGAATCCCTTGATCAGCGATTGCAGCTGTTGCGAGGCGAATTCCGCGTCCATCGGCGCCAAGCGGCCGTCGGCCAGTGCCGCGCGCAGCCAGGTGGTGGTGCCTTCTTCCTTGCTGCCCAGTTGCGACAGCAGTGCGCGCGCGCGTTCGGGCGAGTGGATGCCTTCGGCGATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 35265-39374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQK010000066.1 Xanthomonas melonis strain DMCX contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35265 28 100.0 32 ............................ CATTCGTGTCGCGCCGGTTGCGGCCTGAATCT 35325 28 100.0 32 ............................ AAGTGCTACTCGGTCAGCTGGGCAGCAAGTCG 35385 28 100.0 32 ............................ CTTGCTTGTTGTAGTTGTAAGCTGGTCTACAA 35445 28 100.0 32 ............................ GTTCCGTGTTCGCCAGCCAGTCCGAGCTAGAC 35505 28 100.0 32 ............................ AGCTTCTTGCAAATGTCGCTCACCAACTGCTC 35565 28 100.0 32 ............................ CTTGAGGCGCACGAAGCCGGTCACGACAATGT 35625 28 100.0 32 ............................ TTTGAGGCTTGCTTCGCCATACAAAAAGAAGC 35685 28 100.0 32 ............................ AACACGAAGCCCAGCACCGTCGTGCAGGCCAA 35745 28 100.0 31 ............................ TCGTCATGTCGTGCGTGCGGCGCGGCTACCT 35804 28 100.0 32 ............................ TGCACGGTCGTGAAAGGCGCGGCCAGCATGCG 35864 28 100.0 32 ............................ TTAGCGCGTAGGCTTGCGTACGTGCTGATTGC 35924 28 100.0 32 ............................ AACGTCGTCGCTTTCGCTTCCAAGACCCGGAC 35984 28 100.0 32 ............................ ATGTGGCTGGTCCTGATCGCATGCGCATACCT 36044 28 100.0 32 ............................ AGGCGGCCGTCGCGATACCCCTGCCGGTGCAC 36104 28 100.0 32 ............................ GTGCTGGTGGCGAAGTCGGACGGCTACTGATG 36164 28 100.0 32 ............................ ACGCCGTTCGCCATCTCGGCAGTCAGGCTGCC 36224 28 100.0 32 ............................ ACCGGTGTCGAGCCCGCGTAGCTCCTTCACCC 36284 28 100.0 32 ............................ AGCGGCCTGCCCTTGCCGTCAACCATCGGGAA 36344 28 100.0 32 ............................ TGGAACAGCGCCGCGGCTCGCTGTGGATGCGG 36404 28 100.0 32 ............................ CAACTCAACGATCCAGTTCGACGCGAACGCCA 36464 28 100.0 32 ............................ TCATTGGGACCGGAGTCGATGATTCAGCACAA 36524 28 100.0 32 ............................ AGCGACACTGTTCGCGCGCTGCCTGTACCCAG 36584 28 100.0 32 ............................ GGTGTGCGCTGCAACGCTGGCTCCGACAGCGC 36644 28 100.0 32 ............................ GGGAAGTTCGTTGTTGCTGACGATGCCGCATT 36704 28 100.0 32 ............................ TTCTGAAGCGTGCGCTTGATGTAGTCGTTCTG 36764 28 100.0 32 ............................ ACGAGGACAAACCGCTTTCAGATGAGCGAATT 36824 28 100.0 32 ............................ TTGCCACAGACCGGGCAAAGCGCTGTAAAGGA 36884 28 100.0 32 ............................ TTGTTGCCCGGGATCATGTAGGTCTTCCCGCC 36944 28 100.0 33 ............................ TGCGCCAGAGTCATGGCCGGGATGGTGGTGGAA 37005 28 100.0 32 ............................ TCATCTGCTTCAGGCGGACTCGGCATTTCGTC 37065 28 100.0 32 ............................ TGCCGCAGCTCGCCGGGCCGTACGAACACCAG 37125 28 100.0 32 ............................ TTCCAGCCGCTGGCCTTTCGGTCATCGACGTC 37185 28 100.0 32 ............................ TCACCTTCCCGGACGGAAAAACCTGGGGATAC 37245 28 100.0 32 ............................ AGCGCGGCGAGGCGGTCGTTCGGATGCATGGT 37305 28 100.0 32 ............................ TACAACCACGACGAGTGGGCAATCGGCATGCA 37365 28 100.0 32 ............................ AGTGATGCGCCGCCCGTTGTGGCGTTGCCGTC 37425 28 100.0 32 ............................ GATCGCACTCAGCGTGCGTGTACTTGCGCCCC 37485 28 100.0 32 ............................ GATCGCACTCAGCGTGCGTGTACTTGCGCCCC 37545 28 100.0 32 ............................ GCCGAAATCATCGTGGACAAGTACAAGCGGTA 37605 28 100.0 32 ............................ TGAATTTTACTCGGGATAATCCGCGTCACGTA 37665 28 100.0 32 ............................ ATTGTGGGGACGTGGACCGTTGGGGTGGTCGC 37725 28 100.0 32 ............................ ACCAGCGCCAGCACCCCGACCACCGCGGTGAT 37785 28 100.0 32 ............................ AGGCGATCGGACTCGATCTACACAACGTCGCC 37845 28 100.0 32 ............................ AAGCGCGCGACGCTGGATCAGGAGCGGTATCG 37905 28 100.0 32 ............................ ACGAGACGACCGCTATGCCCCTCATTTCCGCC 37965 28 100.0 32 ............................ AGGTCGCGGAGCTTGTCCTTCGGCTTCCAGTA 38025 28 100.0 32 ............................ CAGCGCCTCGCCGTGCTGGCCGCCGCCAAGAT 38085 28 100.0 32 ............................ TTCCAGATACTGCAGCTGCTTGATGTCGCCCA 38145 28 100.0 32 ............................ CGCAGGTGGAACGTGCGTTCCGGCAGGCCCAG 38205 28 100.0 32 ............................ ATGCGCAACATCGGCGCCAGCCTGGCCCCGCG 38265 28 100.0 32 ............................ AGGCGGGCGGCGCGCTCGGCGTCTTCCTTCGC 38325 28 100.0 32 ............................ ACCCTGGCCGACGTGGTGGACGGCGTGGTGGC 38385 28 100.0 32 ............................ AGTGTCAGCAACGCCGATGCGGCCGCACACGC 38445 28 100.0 32 ............................ ACGGGAACGCGAGCATACGGTTGAGGTTTCCG 38505 28 100.0 32 ............................ GCCCCGCGCAATCCGGAGCCGGTCTATCAGTG 38565 28 100.0 32 ............................ GTGCCATGGCATGGACGCGTAAGCCACGTCCT 38625 28 100.0 32 ............................ AGTATTGCGGGCGGCCGTCCCACGGGTGGGCA 38685 28 100.0 33 ............................ ATTGGCCCCGGTAGCATATGCAGCGGCATCGAT 38746 28 100.0 32 ............................ TGGCTCATGGTGGCTGTACGGCGCCCCAGGCT 38806 28 100.0 33 ............................ CCCACGGCCATCAGCGGCCGCGCAGCGCCCCAT 38867 28 100.0 32 ............................ GCTACAAGAGGGAGGCGATTTGCAATCGTCAC 38927 28 100.0 32 ............................ ATCGGCTGCCACTCGGCTTCCGGCTGTTGAGC 38987 28 100.0 32 ............................ TAAGACATGTCGACCTGCGTCGCGCTCACCGC 39047 28 100.0 32 ............................ TTGCGGTTGGTGGCGCGAAATTGCGCTTCATA 39107 28 100.0 32 ............................ ACCTCGAGCACGGCGCGCAGCAGGTTCATTTC 39167 28 100.0 32 ............................ CAGGCGCGTGTGATTGACATGAGCGCACTGGG 39227 28 100.0 32 ............................ TGCAGCAGGTAGCTGTCCAGGTAATCCGCCGC 39287 28 100.0 32 ............................ ACCCGCTACTGCTCAAAACTTGCGCAGCTGTT 39347 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 69 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CATTGCAGACATTGATGGCCCCGCCCTGGCTGCAAGGCATGCAGGATCATTTGACTGTATCGGACATCTACCCCACCCCCGCTGGCGTGCAGCATCGGCGAGTGATGCGGGTACAGGCCAAGAGCAGCCCATCACGCCTACGCCGCAGGGCGATGCGACGCCACGGACTGGATGCAGAAGCGGCGCTGCAACGCATCCCGGATTCGGCCTCCGAACGATTGCAGCTGCCCTTCGTGGTTCTGGGTAGCCGCAGCACAGGGCAACCCTCGTTCCCGCTCTTCATTCGCCAGGGTCCATTGTCGTCCACTCCAGTGCCGGGCACCTTCAACAGCTACGGCCTGAGCCAGGACGCAACCGTTCCCTGGTTCTGACCCTTTTTTCCTGCGCAGAACACAGCTCTTAAGAATCAACAACTTGGCGGGCCTCCCAAGATAAGGGGGCCCGTTTCTTTTTTGGGGATCTTCCCAGTACCATCAACAGCTTGCGTCATTTTTTGTCTT # Right flank : CTGGTCGCCAGTGGCCGATGCCGCGCCCTGGTGTCAACGCCGATTTAAATCTGACCCACTTTTCGTTGGATCGCCGAAGTAAATCTGACCCACCCGGGGTCTTGTTCGTTGCGCGGTTCGACTGCTCAGGGCCGGGGCCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //