Array 1 13539-15165 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTI01000055.1 Geobacillus stearothermophilus strain FHS-PPGT111 scaffold_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13539 30 100.0 35 .............................. ACAACATGCCGGAGAAAACGATCGGAAATATCCTT 13604 30 100.0 35 .............................. AAAATAGATGTCCCAAAAATTGACAGGCCGAAAGG 13669 30 100.0 36 .............................. TCACGCCAATCTCCAAGTTTTCACGCAGAAACTTTT 13735 30 100.0 35 .............................. AGCTCAAATTGAATCATTTTCGTTTCACGACGAGG 13800 30 100.0 35 .............................. ACGAGTACGTCGACGTCGAAACTACAATAGAAATC 13865 30 100.0 36 .............................. TATAGAAAATGCTGGACGATGAGCTTGCCTTTCCGC 13931 30 100.0 35 .............................. TCATCGCCCATTTCAGTGACAATGGCCACGATGTC 13996 30 100.0 38 .............................. CCACATTTCGCATCGCTGTTCGTTTTGAATGCCCAGAC 14064 30 100.0 36 .............................. CCCGACGAGTAGCGGGATAATGTTAGCGTTTTTCCT 14130 30 100.0 37 .............................. CCACTTGTTGAATATTCAGCAAAAGATTGCAGACCGA 14197 30 100.0 36 .............................. TAGTACTACAATTTTATCTAGATGTCAACTACTTTT 14263 30 100.0 39 .............................. CGCATAATTGAACACTCTCCTTTGTGATTAATTTTTCGT 14332 30 100.0 40 .............................. TCCTCAACAATCTCGAAGAAGTCGTCAGAGATTGCGGCGC 14402 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 14469 30 100.0 35 .............................. AAGTTTCAATATCGCCCCGAGATGTATTGGCTTTA 14534 30 100.0 39 .............................. GGTAGAATCACAATTTCGGTTCTCCATATACTTCCCGAA 14603 30 100.0 36 .............................. AAGAAGAGCAGGAAAGAGTAAGAGAGGATCTGGAAG 14669 30 100.0 37 .............................. GCATTTTTGTTACCATTTGAATTTGATTCATCATGAT 14736 30 100.0 38 .............................. TCTCTTTTCAAAGTGACGATGTTCATTTATGCGTACAA 14804 30 100.0 38 .............................. CCCAATGATCGTAAGGAAAAAGCAACGCCTTTGCGTTC 14872 30 100.0 36 .............................. CCATGATGGTGATGATGCAGCGATTGCAAAATTTCC 14938 30 100.0 36 .............................. ATACGCTCGAGCAATGTTGCTTGGTCTGTTATTTCC 15004 30 100.0 36 .............................. GATGCCTCGATCGGTACGCTGATACATCTTTAGAGG 15070 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 15136 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : TAATGAAGCTAAAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAATACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8861-11625 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTI01000042.1 Geobacillus stearothermophilus strain FHS-PPGT111 scaffold_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 8861 30 100.0 35 .............................. AAAGTTTATGATTAAAAAAGCGATAGCGTTTATCG 8926 30 100.0 38 .............................. GGCACCGGGTAGGCCGTCCGCCGGATTGGCGGGAAATC 8994 30 100.0 36 .............................. GAACGCATGGCGCTGACCAAGCTCAGCCCCATCCAA 9060 30 100.0 37 .............................. TCTACATCCGGCTTACTTGTTGGCCGTAGCTGCCCAG 9127 30 100.0 36 .............................. GGAGATACTGGTGTTCTAGGAATGTACCCAGTATCG 9193 30 100.0 35 .............................. TGCGTATAGGAGCAACATTTCCGCCTGGGTTTTTG 9258 30 100.0 39 .............................. TGGGATAAAGCGGCGGAAAAATCCATGTGGCTCATGAAA 9327 30 100.0 37 .............................. CAATTCCTCGGTTTCCCAATCATCATCCCAATCGTCA 9394 30 100.0 37 .............................. CGGATATGGAGCTAACTCTCCGGTTATGGGCTGGATT 9461 30 100.0 39 .............................. CCATCTCCACACAAAAAGCGATATTCGTCATTCGTTTAC 9530 30 100.0 37 .............................. CTTGAGCGGCGCATCCTCGCCTCTCTCGCTTGCTTTC 9597 30 100.0 37 .............................. CAAAATTGATCGCATATTCTTCGGATTCAATCGGCAC 9664 30 100.0 36 .............................. CGTACCTCCTTCTCCATCATTTCTCGGAGGAGATCA 9730 30 100.0 35 .............................. ATCGCATAATGTCTTTTCGTTTTGAGCGCCTCCTC 9795 30 100.0 35 .............................. TTTTTTAGCTTGTAAGCATCATCGAGAGCCTCATT 9860 30 100.0 35 .............................. TGATAAGTCAGTCCGGCGATTTCCCGCCAATCCGG 9925 30 100.0 35 .............................. TAGCGCCACAACAAATAACAGCGACACTGTAAAAA 9990 30 100.0 36 .............................. AATCGTGGGTGTTTGATGAAGTCCTCCCAACCATCC 10056 30 100.0 38 .............................. TTGGGGATATCGAAAAATACCGCTTCAAAGGCGTGATT 10124 30 100.0 36 .............................. ATAAAAGCCGCATAGCTAAAAAATGCTTGATACATC 10190 30 100.0 35 .............................. TGCAGCCGTTCCTTGTCCGTCATCGCCGTTTCAAA 10255 30 100.0 38 .............................. AAAGATGCTGCACTTTCTATTTTGGCAGCAGTCGCAGG 10323 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 10389 30 100.0 38 .............................. GCTGTTCCGGTTGGTGATGCTTGGGCGAATCCGTACAC 10457 30 100.0 37 .............................. TGGACAGTGAATTTGCGACGGGCGTTTTCGCAGTAGA 10524 30 100.0 36 .............................. ATTTCGGAAAAGCGGCCTGATGTATGCTCGAGCCAA 10590 30 100.0 35 .............................. AGATACAACAAACGTAAATCTTGATCCGTGAGTTT 10655 30 100.0 39 .............................. ATTCGCTCGCGCTTCAGAACAGGCTCAATTTCTCTCGCT 10724 30 100.0 38 .............................. CTCGCTTCGCACTTGCTTTGGTGAATCGTTCAATTTGC 10792 30 100.0 35 .............................. TCATACCCTCACCCCACTAAAACGCAAGTGATTCC 10857 30 100.0 40 .............................. GCTGGTTGTAAATCTCCATTTTCACGCGATAAATCTCTTT 10927 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 10993 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 11058 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 11124 30 100.0 37 .............................. ACCGCTATGTCGAATTAATCGAAACCATCAGCCGCGA 11191 30 100.0 36 .............................. CAGTTAGCACAAGAAACGGATACATCAGGAATGGAG 11257 30 100.0 41 .............................. GAAGCCACCCGTGGCGATGACATTGTGGTTGTCACGGTCGA 11328 30 100.0 39 .............................. AACTGGGGGAAATACAACCTCACTAAAGGCGGCAAGCCG 11397 30 100.0 37 .............................. ACAATCCGCAAACAGCGAACGCCGAGGGGTTCTACAA 11464 30 100.0 37 .............................. GATGTTAGGAACTAGCTTTTCGTTGCCCATGATTTCT 11531 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 11597 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ========================================= ================== 42 30 99.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 20337-22485 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTI01000042.1 Geobacillus stearothermophilus strain FHS-PPGT111 scaffold_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20337 30 100.0 36 .............................. GCGACTCCCGAGATCGCTCTGTCGCTGGAGCCTCCG 20403 30 100.0 36 .............................. GCGACTCCCGAGATCGCTCTGTCGCTGGAGCCTCCA 20469 30 100.0 37 .............................. TCGCAAACGTATCGAAACTCATCCCGGAGATCCCAGC 20536 30 100.0 35 .............................. GACGAACTGAAAAACAAGCTACAAAATGAAAAGTA 20601 30 100.0 37 .............................. TCGATAAAAATCATCCGGGATACCCGGCAAATTCAGT 20668 30 100.0 36 .............................. AACAAAAAGGAAGAGGAAATTTACAGTCAATTGAAC 20734 30 100.0 38 .............................. AGTAGTAGCCATCTAAATACGATTCGCCTAGAACGTCA 20802 30 100.0 36 .............................. TTTATTTTCTCCTTTATATCTTTTCTTCAAATTTTT 20868 30 100.0 38 .............................. AGAAAAGGCTCGCTTGCTGGAGTCGATGGGCGCTTACA 20936 30 100.0 36 .............................. CGAAAAGCGCAAGCTGAAAACGGCGAGGAGGATCCG 21002 30 100.0 36 .............................. CCGCTAATCTTATTATAATCCTTTGCGTTTCATTTG 21068 30 100.0 37 .............................. AATCAACAAACAATCTCCTTACAAAAGATCGTGAACG 21135 30 100.0 36 .............................. CCTCTACGAGATACAAAATGTCGCCTAGATTTTCGC 21201 30 100.0 38 .............................. AGTCTATTTGTCTAGCATACTTTTTCGTTTTTGTCAAT 21269 30 100.0 38 .............................. CAGAATACCAAATCACTCTGTATATAAAGAACAGCTAA 21337 30 100.0 35 .............................. CTGCCGATCATAATCATAATCGCGCCGCCGGTCAT 21402 30 100.0 36 .............................. TCGACCTACTTAGACCATTTTCCCCGCCCTTTGTAC 21468 30 100.0 36 .............................. CTCGTTGAATGTGTCCATTGCCCACATGACGTAAGA 21534 30 100.0 35 .............................. ATATTTCGAAATCCAGATTTCGCTTTTCACTACTC 21599 30 100.0 35 .............................. CAAGTTTACGGAAGAGCAAAGGAAGCGTGTTTCTG 21664 30 100.0 35 .............................. AGCTGAGTGTCAGCGAACTGGGAGTTGAACACGTC 21729 30 100.0 35 .............................. AGTATCTGTATCGTCTCCTGCGTCGCCACGTACGC 21794 30 100.0 36 .............................. ATCAATCGCCTGAGCAAATCGCCATTTCCGCATCCA 21860 30 100.0 36 .............................. TTCATAACCATACCTCCTACATTTTGTTTTTGTTGC 21926 30 100.0 37 .............................. GAATGGAATCGCCCCATCTTCCATCATCGGTGGTACA 21993 30 100.0 37 .............................. TATCTCGTTTCTGCCAGTCTTCTAGTCCTTCTGGTAT 22060 30 100.0 35 .............................. CTCCTTCATCTTTGAAGAATCCGCGGTATGTATAC 22125 30 100.0 36 .............................. ACGGACGCCAATGCGGATTCCACTCACGAAGTTTAC 22191 30 100.0 36 .............................. GTAGATCGGCGTCAAGAAATTATCCAACAACTCAAT 22257 30 100.0 37 .............................. AAAGGTATTCAGCAAAAGTTGGATGCAGTCGTTGAGC 22324 30 100.0 36 .............................. ACAGAACAGACGAGAAAGGGCATCAAGAAGTACGGC 22390 30 100.0 36 .............................. CCTTGCTTCGGCTTCTGATGATGTAGCGGAATTCAT 22456 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CTTTGGCGTTTCTTCTCTACCTTCATTGTAAATTATCACTTTATTTCGGAACAAAAGAGACATTTTTTTGCACATTCCTTCAGAAAGCCCTCTCCCCTTTTCTGAAAGAATGTGCTAAATTTTTTGTGAATTATTTCGGAAGAGAAAATCCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 33020-31547 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTI01000006.1 Geobacillus stearothermophilus strain FHS-PPGT111 scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 33019 37 100.0 33 ..................................... TTGTGACGACAGCGCCTCTACACGCCCAACTAC 32949 37 100.0 34 ..................................... ATAAGGTCGTGATCGACATTGCTCACCGTCGTTC 32878 37 100.0 35 ..................................... TCGACTGTTGCGACTATTGCCTTGCCCGCGCTCGT 32806 37 100.0 34 ..................................... GCTTCCAGAGGAAAAAAGAAAACTTGTGCAGCTC 32735 37 100.0 35 ..................................... CCTTTCGCTGTTTTGCTTTGAATTTCGATAATGCG 32663 37 100.0 34 ..................................... GAGAATGGCCGAAAATAAAAAGGAGCGGGCTTAA 32592 37 100.0 35 ..................................... TGAACTAATGTTTTGACAACATCGATCACTGTAGT 32520 37 100.0 34 ..................................... ACACAGCACGAGCTTGAAGCGGCATATATGAAAA 32449 37 100.0 34 ..................................... CATAAGGATCTCTCCTCCAATACTCCCCGACTCC 32378 37 100.0 35 ..................................... TCGATCCGGCTGTAATATTGCGCGTCTGCGGATGT 32306 37 100.0 36 ..................................... TTTGAAACAACCTTAAACGCCATCAAAACTACATTT 32233 37 100.0 34 ..................................... TCATACACCTGCGTGCAGAACTCACCCTAATTCC 32162 37 100.0 36 ..................................... AAGGCAGGTGACAGCATGAACACCATTCAGGATCAA 32089 37 100.0 35 ..................................... TATTACCCTCGCAAGAAAAACGCCACAGAAGCCAA 32017 37 100.0 36 ..................................... AGAACACCAAGTGGCTTCCCGGCCAGGTCGTACAGC 31944 37 100.0 35 ..................................... CTATAATCGACAATACAATGCCAATGGATGCAACG 31872 37 100.0 35 ..................................... TCTGGTATTGGTCTGTTCAAATTGAGCGCTTCGTC 31800 37 100.0 37 ..................................... CGCATGCTGATCTGGAAAGGATGTGGGGTCATGGTTT 31726 37 100.0 34 ..................................... CCGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 31655 37 100.0 35 ..................................... ACAAGGAAATTTGCGCTATTATCGACGACGTGTCC 31583 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : AAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 146-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTI01000105.1 Geobacillus stearothermophilus strain FHS-PPGT111 scaffold_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 146 30 100.0 37 .............................. ATAAGTGAGAACCGTGAATTGAGGAGTAGCTTTTTCC 213 30 100.0 39 .............................. CTCGATTGTTGCGACTATGCCACTTACCGCGCTCGTACG 282 30 100.0 36 .............................. CACCTGCGGAGTGGGTAGCGGCTTTGCAAGAAAACC 348 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 413 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GCGCACCCTAGGTCTGTAAGATATCCACAAAACTGAAAAAGGATGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACCCCTGAGGGGCCGAAAAGCCTTGATAAATCAACATTTCTAGAGGGAGGAATAATGATGAAAGGCATG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACTGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //