Array 1 90218-90449 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHU01000001.1 Haemophilus parainfluenzae ATCC 33392 strain NCTC 7857, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 90218 32 100.0 36 ................................ CGCAAAATGAAACAATGACACGCACAATCAAGCTAA 90286 32 100.0 34 ................................ AGGGCAATAACTCACAAAATCCCATGTTTTATAT 90352 32 93.8 34 ..........C..C.................. TACTTTTTCTTGTTTTTAAATCAAGATTTAACCA 90418 32 87.5 0 .............C.......CA........A | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 95.3 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACAAGGCATGGCTGAAGTGGCAGTGAAAAACAAATTCTTGCTTGGTGATGAAGTAGAAATGATGACTCCACAAGGCAATATCGTCTTTAAGATTGAAAAAATGCTCAATCGCAAAAACGAAAATGTGGAAGCCGCACTCGGCGATGGCCATTTTGTCTTTTTAGATGTGCCACAAGACATCCAGCTTGATTATGCCTTGTTGATGCGTAACCTAGTCAACACCAACACGCGCAATCCACATAATTAATTTGTTAAAAAAATGTTGCATTTGTTAATAAATAAACTATAATACGTCCCATACCTGATTTGTTAATTCAACAACTCATAGTATGACTCCAAATATTTTGCCCTTTCACCTTTTTGAAAGGGCTTTTTTTATGCCCAAAATAAATTTTGAGATATAGATCACAAATTTAATATATATTTCATTATCATATTGAAGCCATAATAAAAAGGCGTACACTATCTCATAATTTTATATTTAACAATGGGATAATAG # Right flank : AACAAGCACCGAAGGGAACAACGTTAGTTAATAAGGAAAGAACATGGGCGTTAAACGCATTGTGGCCAATATCAACGTAACCCAACCCGTCGCAGCAAAGGCTTTCTACCATGACTTGCTTGGACTGGAATTGCTAATGGATCATGGTTGGATACAGACCTACGGGCAGGATACAACCATGTCTGTGCAGGTTAGTTTTGCCAGTGAAGGCGGTTCTGGCATGCCTGTGCCTGATTTGTCTATTGAAGTGGACAATCTGGGCGAATTATTGGAACGGATGCAGCATGCTGGTTTCACACCTGAATACGGACCAGTCACTGAGCCCTGGGGCGTGCGCCGTTTTTTTGTGCGTGATCCGTTTGGGCGGCTAGTGAATATTTTGCAGCATGAATAAGTTAACTTAATGCGTGGCTACGCCATACACCCTAGCCGCCTCCGCGCGGCTGTGTGTTGAAACATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1911349-1909330 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGHU01000001.1 Haemophilus parainfluenzae ATCC 33392 strain NCTC 7857, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1911348 36 91.7 30 ..AA..A............................. GGCGTTATCTACCGGAACAGGCAAACAAGA 1911282 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 1911216 36 100.0 30 .................................... TAAAAAACCGCACTCTGTTTCCAAAGTGCG 1911150 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 1911084 36 100.0 30 .................................... TCACGGCGACTTATCATGGGCAATTATGAA 1911018 36 100.0 30 .................................... GCCTAATCGAGCAAATTGACAGCCACGCGG 1910952 36 100.0 30 .................................... TTTTTGCGTTCCCAAGTCTGGACGACTTGA 1910886 36 100.0 30 .................................... GCTTACGTAATTTTTTAATATCGCCTTTCA 1910820 36 100.0 30 .................................... GCAATCACAATATCCATCGAGCGCAATTGG 1910754 36 100.0 30 .................................... ATAGAGCTAAAGGCCTCAATGGAGTTTTTC 1910688 36 100.0 30 .................................... AGCCAATCTTGTTTTATCTTCCAATTCTTT 1910622 36 100.0 30 .................................... GTTATGTCTGGCGTATTGTGGCAACAAAAT 1910556 36 100.0 30 .................................... CCACATCGGCACAGAATAACGTGCAGTTTC 1910490 36 100.0 30 .................................... GCAATCCGTTGAAGTGCAAGGCGAGTTTAT 1910424 36 100.0 30 .................................... TGTTTCAACGCTTCATTCAAAACAGTAAAA 1910358 36 100.0 30 .................................... CAGGAGGCAAACGATACTTACTCAAATCTT 1910292 36 100.0 30 .................................... GCAAGTTGAGTTATACAATGTCTATGCCGG 1910226 36 100.0 30 .................................... TGAACAAAACGCAATGATCGAGCTTTGGGA 1910160 36 100.0 30 .................................... GAGGTGAAAATGGAAGTGCACATTAATGGG 1910094 36 100.0 30 .................................... CCGTTTTTCAGCGTTCTGCCTTTCGTCATT 1910028 36 100.0 30 .................................... AATTAGGAATAAGTTTCGCACTCATATCTG 1909962 36 100.0 30 .................................... CATGGTTCAAAACATTTGACATAGCAATTT 1909896 36 100.0 30 .................................... TTTATTTCGGTCATACACTGACAACATCTG 1909830 36 100.0 30 .................................... ATCTTAACTTTAAATACTTTAGAGCAAGCA 1909764 36 100.0 31 .................................... TTTTATTAGCGTTAATTGCTATGCGTATTTA 1909697 36 100.0 31 .................................... TTATCAACGCTCGGGAATCCACCAAAATTGA 1909630 36 100.0 30 .................................... TGTTTGGATTGAGCAGATAACAAGGCTTGA 1909564 36 100.0 30 .................................... AGATTTTGAGATTGCTCCCGGTGCAATCAT 1909498 36 100.0 31 .................................... TTGGCCGTTCTCTCTTGATTTATCTTCGCTT 1909431 36 100.0 30 .................................... GGATTGAATAGCCTTATTTTCATCTACCAC 1909365 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.7 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GTCTTACTATTGGTGAAGTAAAAGATGATGAATTCTGCGTGAATTTAATCCCTGAAACTTTACACCGAACCTTGATCGGTAAACGCCAAATTGGCGATTTAGTAAATATTGAAATCGATCCGCAAACGCAAGCGATTGTGGATACAGTGGAGAATTATTTAAAAGCAAGAGGGATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGCCATATTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTAATGGTGTAATATGGAATGTACTTTTAGGTATTGCATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTATATAAAAAATGGGAGAGAGAGTATCAGAAACAGATGCGAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT # Right flank : AGGGACGGCAAAAAGCCCCATACCGCAAGGTTTAGGGGCTTTTGTTTTATCTAAAAAAACGGTTAAAAAAGCAGTAATTGATTTGAATTGACCTTTTTTTCTTGCGTTTTTTTCTCTCCCACTAAAATTTCCATGCTCGCAAATTGTTTTTCTGTAATAGATAAACATCGAATTGAGCCCTCTTCAGGTAAGTGTGCGACGAGCCTTTTATGATGTTTTTCTAAAGCATCTCGCCCTTTAATAATTCGAGTGTAAATAGAAAGTTGCAACATTTGATAACCATCTTTAAGTAAAAATTGACGAAATTGGTTTGCAGCCCGCATTTTTGCTTTAGTGGTAACCGGTAAATCGAATAAAACGATCATACGCATAAATACCTCCTCACTCATATTGATATTCCTGCAATGTATCGATCTCTGGTAACTGCAATAATGTTGCACTTTTTTGAATAAGTGCAATTTGTAAAGAGGCAATGGTTTTATCAATAGCAGTCAAAACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //