Array 1 99508-98136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCSN010000020.1 Escherichia coli strain W1-1 NODE_20_length_108469_cov_43.342886, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99507 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 99446 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 99385 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 99324 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 99263 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 99202 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 99141 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 99080 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 99019 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 98958 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 98897 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 98836 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 98775 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 98714 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 98652 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 98591 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 98530 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 98469 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 98408 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 98347 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 98286 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 98225 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 98164 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46145-47393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCSN010000025.1 Escherichia coli strain W1-1 NODE_25_length_64389_cov_42.884037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46145 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 46206 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 46267 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 46328 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 46389 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 46450 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 46511 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 46572 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 46633 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 46694 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 46755 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 46816 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 46877 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 46938 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 46999 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 47060 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 47121 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 47182 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 47243 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 47304 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 47365 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //